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MOSAL : software tools for multiobjective sequence alignment

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Paquete_etal_1751_0473_9_2.pdf (270.3Kb)
Date
08/01/2014
Author
Paquete, Luís
Matias, Pedro
Abbasi, Maryam
Monsanto Pinheiro, Miguel
Keywords
Pairwise sequence alignment
Multiobjective optimization
Dynamic programming
QA76 Computer software
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Abstract
Multiobjective sequence alignment brings the advantage of providing a set of alignments that represent the trade-off between performing insertion/deletions and matching symbols from both sequences. Each of these alignments provide a potential explanation of the relationship between the sequences. We introduce MOSAL, a software tool that provides an open-source implementation and an on-line application for multiobjective pairwise sequence alignment.
Citation
Paquete , L , Matias , P , Abbasi , M & Monsanto Pinheiro , M 2014 , ' MOSAL : software tools for multiobjective sequence alignment ' , Source Code for Biology and Medicine , vol. 9 , 2 . https://doi.org/10.1186/1751-0473-9-2
Publication
Source Code for Biology and Medicine
Status
Peer reviewed
DOI
https://doi.org/10.1186/1751-0473-9-2
ISSN
1751-0473
Type
Journal article
Rights
© 2014 Paquete et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
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  • Medicine Research
  • University of St Andrews Research
URI
http://hdl.handle.net/10023/4437

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