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Computational studies of earth abundant and organo- catalytic systems
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dc.contributor.advisor | Bühl, Michael | |
dc.contributor.author | Goodfellow, Alister Stewart | |
dc.coverage.spatial | 214 | en_US |
dc.date.accessioned | 2024-10-10T10:46:37Z | |
dc.date.available | 2024-10-10T10:46:37Z | |
dc.date.issued | 2024-12-04 | |
dc.identifier.uri | https://hdl.handle.net/10023/30649 | |
dc.description.abstract | This thesis focuses on the application of Density Functional Theory (DFT) to manganese catalysed hydrogenation reactions (Part I) and organocatalytic reactivity (Part II). Part I: A DFT benchmarking study was performed to reproduce experimentally determined values of hydricity, the heterolytic metal hydride bond strength of 3d transition metal (TM) complexes (Chapter 4) to ensure an accurate methodology for work on these systems. This methodology was employed for the modelling of manganese catalysed enantioselective ketone hydrogenation (Chapter 5). Rational design led to a catalyst with improved stereocontrol by introducing steric bulk in the active site (Chapter 5). Further modification of the ligand backbone led to the identification of routes to improve selectivity and activity by varying sterics and electronics on the ligand (Chapter 5). Using the dataset generated, Machine Learning was performed to predict DFT level barrier heights from GFN2-xTB level descriptors, though the predictive power was limited by the distribution and size of the dataset (Chapter 6). Part II: DFT has been applied to a number of asymmetric reactions involving both isothiourea catalysis (Sections 9.1–9.5) and hydrogen bonding catalysis (Section 9.6). Isothiourea catalysts involve a chalcogen bonding interaction that locks the conformation of a key acyl ammonium intermediate, promoting facially-selective reactivity. The strength of the interaction can be modulated through decoration of the catalyst backbone (Section 9.1), though the nucleophilicity is key to retain catalytic activity over background reactions. DFT can be used to identify the stereodetermining transition states in reactivity (Sections 9.2–9.5) though some tailoring of methodology is required with large dipole moments (Section 9.2) and to adjust entropic contributions (Sec tion 9.3). GFN2-xTB performs well as a preoptimisation technique and for some transition states, but leads to overbinding of the chalcogen interaction, shortening the distance into the repulsive regime of DFT. This remains a powerful technique for conformational sampling, identifying representative low-lying conformations to accurately model diastereoselective rearrangement reactions (Section 9.6). | en_US |
dc.language.iso | en | en_US |
dc.relation | Oates, C. L., Goodfellow, A. S., Bühl, M., & Clarke, M. L. (2023). Rational design of a facially coordinating P,N,N ligand for manganese-catalysed enantioselective hydrogenation of cyclic ketones. Angewandte Chemie International Edition, 62(3), Article e202212479. https://doi.org/10.1002/anie.202212479 | en |
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dc.relation | Goodfellow, A. S., & Buehl, M. (2021). Hydricity Of 3d transition metal complexes from density functional theory: a benchmarking study. Molecules, 26(13), Article 4072. https://doi.org/10.3390/molecules26134072 | en |
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dc.relation | Brodie, C. N., Goodfellow, A. S., Andrews, M., Owen, A. E., Buehl, M., & Kumar, A. (2024). Direct synthesis of partially ethoxylated branched polyethylenimine from ethanolamine. Nature Communications, 15, Article 6253. https://doi.org/10.1038/s41467-024-50403-z | en |
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dc.relation | Agrawal, S. K., Majhi, P., Goodfellow, A. S., Tak, R., Cordes, D. B., McKay, A., Kasten, K., Buehl, M., & Smith, A. D. (Accepted/In press). Enantioselective synthesis of tetra-substituted 3- hydroxyphthalide esters by isothiourea-catalysed acylative dynamic kinetic resolution. Angewandte Chemie International Edition. https://doi.org/10.1002/anie.202402909 | en |
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dc.relation | Oates, C., Goodfellow, A. S., Buehl, M., & Clarke, M. (2023). Manganese catalysed enantioselective hydrogenation of in-situ-synthesised imines: efficient asymmetric synthesis of amino-indane derivatives. Green Chemistry, 25(10), 3864-3868. https://doi.org/10.1039/D3GC00399J | en |
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dc.relation | Yuan, D., Goodfellow, A. S., Duan, Z., Kang, T., Kasten, K., Cordes, D. B., McKay, A., Buehl, M., Boyce, G. R., & Smith, A. D. (2023). Understanding divergent substrate stereoselectivity in the isothiourea-catalysed conjugate addition of cyclic α-substituted β-ketoesters to α,β-unsaturated aryl esters. Chemical Science, 14(48), 14146-14156. https://doi.org/10.1039/D3SC05470E | en |
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dc.relation | Conboy, A., Goodfellow, A. S., Kasten, K., Dunne, J., Cordes, D. B., Buehl, M., & Smith, A. D. (2024). De-epimerizing DyKAT of β-lactones generated by isothiourea-catalysed enantioselective [2 + 2] cycloaddition. Chemical Science, 15(23), 8896-8904. Advance online publication. https://doi.org/10.1039/D4SC01410C | en |
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dc.relation | Computational Studies of Earth Abundant and Organo- Catalytic Systems (thesis dataset) Goodfellow, A. S., University of St Andrews, 1 Oct 2026. DOI: https://10.17630/088af6af-aa20-49a8-b70a-97aa1d8cf91f | en |
dc.relation.uri | https://doi.org/10.1002/anie.202212479 | |
dc.relation.uri | https://doi.org/10.3390/molecules26134072 | |
dc.relation.uri | https://doi.org/10.1038/s41467-024-50403-z | |
dc.relation.uri | https://doi.org/10.1002/anie.202402909 | |
dc.relation.uri | https://doi.org/10.1039/D3GC00399J | |
dc.relation.uri | https://doi.org/10.1039/D3SC05470E | |
dc.relation.uri | https://doi.org/10.1039/D4SC01410C | |
dc.relation.uri | https://doi.org/10.17630/088af6af-aa20-49a8-b70a-97aa1d8cf91f | |
dc.subject | Computational chemistry | en_US |
dc.subject | Density Functional Theory | en_US |
dc.subject | Homogeneous catalysis | en_US |
dc.subject | Organocataysis | en_US |
dc.subject | Enantioselectivity | en_US |
dc.subject | Conformational sampling | en_US |
dc.subject | Benchmarking | en_US |
dc.subject | Machine learning | en_US |
dc.title | Computational studies of earth abundant and organo- catalytic systems | en_US |
dc.type | Thesis | en_US |
dc.contributor.sponsor | East of Scotland Industrial Catalysis (EaSI-CAT) | en_US |
dc.type.qualificationlevel | Doctoral | en_US |
dc.type.qualificationname | PhD Doctor of Philosophy | en_US |
dc.publisher.institution | The University of St Andrews | en_US |
dc.rights.embargodate | 2026-09-30 | |
dc.rights.embargoreason | Thesis restricted in accordance with University regulations. Restricted until 30 Sep 2026 | en |
dc.identifier.doi | https://doi.org/10.17630/sta/1111 |
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