Computational studies of earth abundant and organo- catalytic systems
Abstract
This thesis focuses on the application of Density Functional Theory (DFT) to manganese catalysed hydrogenation reactions (Part I) and organocatalytic reactivity (Part II).
Part I: A DFT benchmarking study was performed to reproduce experimentally determined values of hydricity, the heterolytic metal hydride bond strength of 3d transition metal (TM) complexes (Chapter 4) to ensure an accurate methodology for work on these systems. This methodology was employed for the modelling of manganese catalysed enantioselective ketone hydrogenation (Chapter 5). Rational design led to a catalyst with improved stereocontrol by introducing steric bulk in the active site (Chapter 5). Further modification of the ligand backbone led to the identification of routes to improve selectivity and activity by varying sterics and electronics on the ligand (Chapter 5). Using the dataset generated, Machine Learning was performed to predict DFT level barrier heights from GFN2-xTB level descriptors, though the predictive power was limited by the distribution and size of the dataset (Chapter 6).
Part II: DFT has been applied to a number of asymmetric reactions involving both isothiourea catalysis (Sections 9.1–9.5) and hydrogen bonding catalysis (Section 9.6). Isothiourea catalysts involve a chalcogen bonding interaction that locks the conformation of a key acyl ammonium intermediate, promoting facially-selective reactivity. The strength of the interaction can be modulated through decoration of the catalyst backbone (Section 9.1), though the nucleophilicity is key to retain catalytic activity over background reactions. DFT can be used to identify the stereodetermining transition states in reactivity (Sections 9.2–9.5) though some tailoring of methodology is required with large dipole moments (Section 9.2) and to adjust entropic contributions (Sec
tion 9.3). GFN2-xTB performs well as a preoptimisation technique and for some transition states, but leads to overbinding of the chalcogen interaction, shortening the distance into the repulsive regime of DFT. This remains a powerful technique for conformational sampling, identifying representative low-lying conformations to accurately model diastereoselective rearrangement reactions (Section 9.6).
Type
Thesis, PhD Doctor of Philosophy
Rights
Embargo Date: 2026-09-30
Embargo Reason: Thesis restricted in accordance with University regulations. Restricted until 30 Sep 2026
Collections
Description of related resources
Oates, C. L., Goodfellow, A. S., Bühl, M., & Clarke, M. L. (2023). Rational design of a facially coordinating P,N,N ligand for manganese-catalysed enantioselective hydrogenation of cyclic ketones. Angewandte Chemie International Edition, 62(3), Article e202212479. https://doi.org/10.1002/anie.202212479Goodfellow, A. S., & Buehl, M. (2021). Hydricity Of 3d transition metal complexes from density functional theory: a benchmarking study. Molecules, 26(13), Article 4072. https://doi.org/10.3390/molecules26134072
Brodie, C. N., Goodfellow, A. S., Andrews, M., Owen, A. E., Buehl, M., & Kumar, A. (2024). Direct synthesis of partially ethoxylated branched polyethylenimine from ethanolamine. Nature Communications, 15, Article 6253. https://doi.org/10.1038/s41467-024-50403-z
Agrawal, S. K., Majhi, P., Goodfellow, A. S., Tak, R., Cordes, D. B., McKay, A., Kasten, K., Buehl, M., & Smith, A. D. (Accepted/In press). Enantioselective synthesis of tetra-substituted 3- hydroxyphthalide esters by isothiourea-catalysed acylative dynamic kinetic resolution. Angewandte Chemie International Edition. https://doi.org/10.1002/anie.202402909
Oates, C., Goodfellow, A. S., Buehl, M., & Clarke, M. (2023). Manganese catalysed enantioselective hydrogenation of in-situ-synthesised imines: efficient asymmetric synthesis of amino-indane derivatives. Green Chemistry, 25(10), 3864-3868. https://doi.org/10.1039/D3GC00399J
Yuan, D., Goodfellow, A. S., Duan, Z., Kang, T., Kasten, K., Cordes, D. B., McKay, A., Buehl, M., Boyce, G. R., & Smith, A. D. (2023). Understanding divergent substrate stereoselectivity in the isothiourea-catalysed conjugate addition of cyclic α-substituted β-ketoesters to α,β-unsaturated aryl esters. Chemical Science, 14(48), 14146-14156. https://doi.org/10.1039/D3SC05470E
Conboy, A., Goodfellow, A. S., Kasten, K., Dunne, J., Cordes, D. B., Buehl, M., & Smith, A. D. (2024). De-epimerizing DyKAT of β-lactones generated by isothiourea-catalysed enantioselective [2 + 2] cycloaddition. Chemical Science, 15(23), 8896-8904. Advance online publication. https://doi.org/10.1039/D4SC01410C
Computational Studies of Earth Abundant and Organo- Catalytic Systems (thesis dataset) Goodfellow, A. S., University of St Andrews, 1 Oct 2026. DOI: https://10.17630/088af6af-aa20-49a8-b70a-97aa1d8cf91f
Related resources
https://doi.org/10.1002/anie.202212479https://doi.org/10.3390/molecules26134072
https://doi.org/10.1038/s41467-024-50403-z
https://doi.org/10.1002/anie.202402909
https://doi.org/10.1039/D3GC00399J
https://doi.org/10.1039/D3SC05470E
https://doi.org/10.1039/D4SC01410C
https://doi.org/10.17630/088af6af-aa20-49a8-b70a-97aa1d8cf91f
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