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Acoustic sequences in non-human animals : a tutorial review and prospectus

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Date
02/2016
Author
Kershenbaum, Arik
Blumstein, Dan
Roch, Marie
Akçay, Çaglar
Backus, Gregory
Bee, Mark A.
Bohn, Kirsten
Cao, Yan
Carter, Gerald
Cäsar, Cristiane
Coen, Michael
De Ruiter, Stacy Lynn
Doyle, Laurance
Edelman, Shimon
Ferrer-i-Cancho, Ramon
Freeberg, Todd M.
Garland, Ellen Clare
Gustison, Morgan
Harley, Heidi E.
Huetz, Chloé
Hughes, Melissa
Bruno, Julia Hyland
Ilany, Amiyaal
Jin, Dezhe Z.
Johnson, Michael
Ju, Chenghui
Karnowski, Jeremy
Lohr, Bernard
Manser, Marta
McCowan, Brenda
Mercado III, Eduardo
Narins, Peter M.
Piel, Alex
Rice, Megan
Salmi, Roberta
Sasahara, Kazutoshi
Sayigh, Laela
Shiu, Yu
Taylor, Charles
Vallejo, Edgar E.
Waller, Sara
Zamora-Gutierrez, Veronica
Funder
Office of Naval Research
Grant ID
N00014-12-1-0204
Keywords
Acoustic communication
Information
Information theory
Machine learning
Markov model
Meaning
Network analysis
Vocalisation
QH301 Biology
QA Mathematics
T-NDAS
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Abstract
Animal acoustic communication often takes the form of complex sequences, made up of multiple distinct acoustic units. Apart from the well-known example of birdsong, other animals such as insects, amphibians,and mammals (including bats, rodents, primates, and cetaceans) also generate complex acoustic sequences. Occasionally, such as with birdsong, the adaptive role of these sequences seems clear (e.g. mate attraction and territorial defence). More often however, researchers have only begun to characterise – let alone understand – the significance and meaning of acoustic sequences. Hypotheses abound, but there is little agreement as to how sequences should be defined and analysed. Our review aims to outline suitable methods for testing these hypotheses, and to describe the major limitations to our current and near-future knowledge on questions of acoustic sequences. This review and prospectus is the result of a collaborative effort between 43 scientists from the fields of animal behaviour, ecology and evolution, signal processing, machine learning,quantitative linguistics, and information theory, who gathered for a 2013 workshop entitled, ‘Analysing vocal sequences in animals’. Our goal is to present not just a review of the state of the art, but to propose a methodological framework that summarises what we suggest are the best practices for research in this field,across taxa and across disciplines. We also provide a tutorial-style introduction to some of the most promising algorithmic approaches for analysing sequences. We divide our review into three sections: identifying the distinct units of an acoustic sequence, describing the different ways that information can be contained within a sequence, and analysing the structure of that sequence. Each of these sections is further subdivided to address the key questions and approaches in that area. We propose a uniform, systematic, and comprehensive approach to studying sequences, with the goal of clarifying research terms used in different fields, and facilitating collaboration and comparative studies. Allowing greater interdisciplinary collaboration will facilitate the investigation of many important questions in the evolution of communication and sociality.
Citation
Kershenbaum , A , Blumstein , D , Roch , M , Akçay , Ç , Backus , G , Bee , M A , Bohn , K , Cao , Y , Carter , G , Cäsar , C , Coen , M , De Ruiter , S L , Doyle , L , Edelman , S , Ferrer-i-Cancho , R , Freeberg , T M , Garland , E C , Gustison , M , Harley , H E , Huetz , C , Hughes , M , Bruno , J H , Ilany , A , Jin , D Z , Johnson , M , Ju , C , Karnowski , J , Lohr , B , Manser , M , McCowan , B , Mercado III , E , Narins , P M , Piel , A , Rice , M , Salmi , R , Sasahara , K , Sayigh , L , Shiu , Y , Taylor , C , Vallejo , E E , Waller , S & Zamora-Gutierrez , V 2016 , ' Acoustic sequences in non-human animals : a tutorial review and prospectus ' , Biological Reviews of the Cambridge Philosophical Society , vol. 91 , no. 1 , pp. 13-52 . https://doi.org/10.1111/brv.12160
Publication
Biological Reviews of the Cambridge Philosophical Society
Status
Peer reviewed
DOI
https://doi.org/10.1111/brv.12160
ISSN
1464-7931
Type
Journal article
Rights
© 2014. Cambridge Philosophical Society. This is the accepted version of the following article: Acoustic sequences in non-human animals: a tutorial review and prospectus Kershenbaum, A., Blumstein, D., Roch, et al. 2014 In : Biological Reviews of the Cambridge Philosophical Society. Early View, 42 p., which has been published in final form at http://onlinelibrary.wiley.com/doi/10.1111/brv.12160/abstract
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  • University of St Andrews Research
URI
http://hdl.handle.net/10023/7848

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