Show simple item record

Files in this item

Thumbnail

Item metadata

dc.contributor.authorGupta, Roopam K.
dc.contributor.authorHempler, Nils
dc.contributor.authorMalcolm, Graeme P. A.
dc.contributor.authorDholakia, Kishan
dc.contributor.authorPowis, Simon J.
dc.date.accessioned2023-07-18T11:30:29Z
dc.date.available2023-07-18T11:30:29Z
dc.date.issued2023-03-09
dc.identifier290716575
dc.identifierf19a7846-ad87-43e0-aae9-27a9daec54a4
dc.identifier85165563590
dc.identifier.citationGupta , R K , Hempler , N , Malcolm , G P A , Dholakia , K & Powis , S J 2023 , ' High throughput hemogram of T cells using digital holographic microscopy and deep learning : Optics Continuum ' , Optics Continuum , vol. 2 , no. 3 , pp. 670-682 . https://doi.org/10.1364/OPTCON.479857en
dc.identifier.issn2770-0208
dc.identifier.otherRIS: urn:4D7A6645DA44E002B4F2C54E6E25A072
dc.identifier.otherORCID: /0000-0003-4218-2984/work/139157092
dc.identifier.urihttps://hdl.handle.net/10023/27983
dc.descriptionFunding: Engineering and Physical Sciences Research Council (EP/P030017/1, EP/R004854/1); Medical Research Scotland (PhD-873-2015); Australian Research Council (FL210100099).en
dc.description.abstractT cells of the adaptive immune system provide effective protection to the human body against numerous pathogenic challenges. Current labelling methods of detecting these cells, such as flow cytometry or magnetic bead labelling, are time consuming and expensive. To overcome these limitations, the label-free method of digital holographic microscopy (DHM) combined with deep learning has recently been introduced which is both time and cost effective. In this study, we demonstrate the application of digital holographic microscopy with deep learning to classify the key CD4+ and CD8+ T cell subsets. We show that combining DHM of varying fields of view, with deep learning, can potentially achieve a classification throughput rate of 78,000 cells per second with an accuracy of 76.2% for these morphologically similar cells. This throughput rate is 100 times faster than the previous studies and proves to be an effective replacement for labelling methods.
dc.format.extent13
dc.format.extent4592362
dc.language.isoeng
dc.relation.ispartofOptics Continuumen
dc.subjectAnalytical techniquesen
dc.subjectDiode pumped lasersen
dc.subjectHolographic microscopyen
dc.subjectHolographic techniquesen
dc.subjectImaging techniquesen
dc.subjectScanning electron microscopyen
dc.subjectQC Physicsen
dc.subjectNDASen
dc.subjectMCCen
dc.subject.lccQCen
dc.titleHigh throughput hemogram of T cells using digital holographic microscopy and deep learning : Optics Continuumen
dc.typeJournal articleen
dc.contributor.sponsorEPSRCen
dc.contributor.sponsorEPSRCen
dc.contributor.institutionUniversity of St Andrews. Sir James Mackenzie Institute for Early Diagnosisen
dc.contributor.institutionUniversity of St Andrews. Centre for Biophotonicsen
dc.contributor.institutionUniversity of St Andrews. Institute of Behavioural and Neural Sciencesen
dc.contributor.institutionUniversity of St Andrews. Biomedical Sciences Research Complexen
dc.contributor.institutionUniversity of St Andrews. School of Physics and Astronomyen
dc.contributor.institutionUniversity of St Andrews. School of Medicineen
dc.contributor.institutionUniversity of St Andrews. St Andrews Bioinformatics Uniten
dc.contributor.institutionUniversity of St Andrews. Cellular Medicine Divisionen
dc.identifier.doi10.1364/OPTCON.479857
dc.description.statusPeer revieweden
dc.identifier.grantnumberEP/P030017/1en
dc.identifier.grantnumberEP/R004854/1en


This item appears in the following Collection(s)

Show simple item record