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dc.contributor.authorOnoufriou, Aubrie B.
dc.contributor.authorGaggiotti, Oscar E.
dc.contributor.authorde Soto, Natacha Aguilar
dc.contributor.authorMcCarthy, Morgan L.
dc.contributor.authorMorin, Phillip A.
dc.contributor.authorRosso, Massimiliano
dc.contributor.authorDalebout, Merel
dc.contributor.authorDavison, Nicholas
dc.contributor.authorBaird, Robin W.
dc.contributor.authorBaker, C. Scott
dc.contributor.authorBerrow, Simon
dc.contributor.authorBrownlow, Andrew
dc.contributor.authorBurns, Daniel
dc.contributor.authorCaurant, Florence
dc.contributor.authorClaridge, Diane
dc.contributor.authorConstantine, Rochelle
dc.contributor.authorDemaret, Fabien
dc.contributor.authorDreyer, Sascha
dc.contributor.authorÐuras, Martina
dc.contributor.authorDurban, John
dc.contributor.authorFrantzis, Alexandros
dc.contributor.authorFreitas, Luis
dc.contributor.authorGenty, Gabrielle
dc.contributor.authorGalov, Ana
dc.contributor.authorHansen, Sabine S.
dc.contributor.authorKitchener, Andrew C.
dc.contributor.authorMartin, Vidal
dc.contributor.authorMignucci-Giannoni, Antonio A.
dc.contributor.authorMontano, Valeria
dc.contributor.authorMoulins, Aurelie
dc.contributor.authorOlavarría, Carlos
dc.contributor.authorMichael Poole, M.
dc.contributor.authorSuárez, Cristel Reyes
dc.contributor.authorRogan, Emer
dc.contributor.authorRyan, Conor
dc.contributor.authorSchiavi, Agustina
dc.contributor.authorTepsich, Paola
dc.contributor.authorUrban, Jorge
dc.contributor.authorWest, Kristi
dc.contributor.authorOlsen, Morten Tange
dc.contributor.authorCarroll, Emma L.
dc.date.accessioned2022-10-25T16:30:15Z
dc.date.available2022-10-25T16:30:15Z
dc.date.issued2022-12-01
dc.identifier281844315
dc.identifierf4694d58-f219-461a-9569-55be55b2a11e
dc.identifier85142911409
dc.identifier000883002000002
dc.identifier.citationOnoufriou , A B , Gaggiotti , O E , de Soto , N A , McCarthy , M L , Morin , P A , Rosso , M , Dalebout , M , Davison , N , Baird , R W , Baker , C S , Berrow , S , Brownlow , A , Burns , D , Caurant , F , Claridge , D , Constantine , R , Demaret , F , Dreyer , S , Ðuras , M , Durban , J , Frantzis , A , Freitas , L , Genty , G , Galov , A , Hansen , S S , Kitchener , A C , Martin , V , Mignucci-Giannoni , A A , Montano , V , Moulins , A , Olavarría , C , Michael Poole , M , Suárez , C R , Rogan , E , Ryan , C , Schiavi , A , Tepsich , P , Urban , J , West , K , Olsen , M T & Carroll , E L 2022 , ' Biogeography in the deep : hierarchical population genomic structure of two beaked whale species ' , Global Ecology and Conservation , vol. 40 , e02308 . https://doi.org/10.1016/j.gecco.2022.e02308en
dc.identifier.issn2351-9894
dc.identifier.otherRIS: urn:9976570DE43113A2B5B57FD2FE48CEDC
dc.identifier.otherORCID: /0000-0002-4605-1896/work/121753942
dc.identifier.otherORCID: /0000-0003-1827-1493/work/121754333
dc.identifier.urihttps://hdl.handle.net/10023/26242
dc.descriptionFunding: Funding for this research was provided by the Office of Naval Research, Award numbers N000141613017 and N000142112712. ABO was supported by a partial studentship from the University of St Andrews, School of Biology; OEG by the Marine Alliance for Science and Technology for Scotland (Scottish Funding Council grant HR09011); ELC by a Rutherford Discovery Fellowship from the Royal Society of New Zealand Te Aparangi; NAS by a Ramon y Cajal Fellowship from the Spanish Ministry of Innovation; MLM by the European Union’s Horizon 2020 Research and Innovation Programme (Marie Skłodowska-Curie grant 801199); CR by the Marine Institute (Cetaceans on the Frontier) and the Irish Research Council; and MTO by the Hartmann Foundation.en
dc.description.abstractThe deep sea is the largest ecosystem on Earth, yet little is known about the processes driving patterns of genetic diversity in its inhabitants. Here, we investigated the macro- and microevolutionary processes shaping genomic population structure and diversity in two poorly understood, globally distributed, deep-sea predators: Cuvier’s beaked whale (Ziphius cavirostris) and Blainville’s beaked whale (Mesoplodon densirostris). We used double-digest restriction associated DNA (ddRAD) and whole mitochondrial genome (mitogenome) sequencing to characterise genetic patterns using phylogenetic trees, cluster analysis, isolation-by-distance, genetic diversity and differentiation statistics. Single nucleotide polymorphisms (SNPs; Blainville’s n = 43 samples, SNPs=13988; Cuvier’s n = 123, SNPs= 30479) and mitogenomes (Blainville’s n = 27; Cuvier’s n = 35) revealed substantial hierarchical structure at a global scale. Both species display significant genetic structure between the Atlantic, Indo-Pacific and in Cuvier’s, the Mediterranean Sea. Within major ocean basins, clear differentiation is found between genetic clusters on the east and west sides of the North Atlantic, and some distinct patterns of structure in the Indo-Pacific and Southern Hemisphere. We infer that macroevolutionary processes shaping patterns of genetic diversity include biogeographical barriers, highlighting the importance of such barriers even to highly mobile, deep-diving taxa. The barriers likely differ between the species due to their thermal tolerances and evolutionary histories. On a microevolutionary scale, it seems likely that the balance between resident populations displaying site fidelity, and transient individuals facilitating gene flow, shapes patterns of connectivity and genetic drift in beaked whales. Based on these results, we propose management units to facilitate improved conservation measures for these elusive species.
dc.format.extent18
dc.format.extent6977670
dc.language.isoeng
dc.relation.ispartofGlobal Ecology and Conservationen
dc.subjectDdRAD sequencingen
dc.subjectMitogenome sequencingen
dc.subjectPhylogenomicsen
dc.subjectZiphius cavirostrisen
dc.subjectMesoplodon densirostrisen
dc.subjectZiphiidaeen
dc.subjectQL Zoologyen
dc.subjectDASen
dc.subjectMCCen
dc.subject.lccQLen
dc.titleBiogeography in the deep : hierarchical population genomic structure of two beaked whale speciesen
dc.typeJournal articleen
dc.contributor.institutionUniversity of St Andrews. School of Biologyen
dc.contributor.institutionUniversity of St Andrews. Sea Mammal Research Uniten
dc.contributor.institutionUniversity of St Andrews. Scottish Oceans Instituteen
dc.contributor.institutionUniversity of St Andrews. St Andrews Bioinformatics Uniten
dc.contributor.institutionUniversity of St Andrews. Marine Alliance for Science & Technology Scotlanden
dc.identifier.doi10.1016/j.gecco.2022.e02308
dc.description.statusPeer revieweden


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