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dc.contributor.authorHameed, Rabia
dc.contributor.authorKhan, Afsar
dc.contributor.authorVan Mourik, Tanja
dc.date.accessioned2018-12-26T00:34:44Z
dc.date.available2018-12-26T00:34:44Z
dc.date.issued2018
dc.identifier.citationHameed , R , Khan , A & Van Mourik , T 2018 , ' Intramolecular BSSE and dispersion affect the structure of a dipeptide conformer ' , Molecular Physics , vol. 116 , no. 9 , pp. 1236-1244 . https://doi.org/10.1080/00268976.2017.1418029en
dc.identifier.issn0026-8976
dc.identifier.otherPURE: 251746399
dc.identifier.otherPURE UUID: 1c7799cd-67b9-4344-998e-3b416de9a0a3
dc.identifier.otherScopus: 85039043603
dc.identifier.otherORCID: /0000-0001-7683-3293/work/57088470
dc.identifier.otherWOS: 000430424300015
dc.identifier.urihttp://hdl.handle.net/10023/16761
dc.descriptionRH acknowledges funding from Higher Education Commission of Pakistan for her visit to the University of St Andrews as a visiting scholar.en
dc.description.abstractB3LYP and MP2 calculations with the commonly-used 6-31+G(d) basis set predict qualitatively different structures for the Tyr-Gly conformer book1, which is the most stable conformer identified in a previous study (Mol. Phys. 104, 559-570, 2006). The structures differ mainly in the ψTyr Ramachandran angle (138° in the B3LYP structure and 120° in the MP2 structure). The causes for the discrepant structures are attributed to missing dispersion in the B3LYP calculations and large intramolecular BSSE in the MP2 calculations. The correct ψTyr value is estimated to be 130°. The MP2/6-31+G(d) profile identified an additional conformer, not present on the B3LYP surface, with a ψTyr value of 96° and a more folded structure. This minimum is however likely an artefact of large intramolecular BSSE values. We recommend the use of basis sets of at least quadruple-zeta quality in DFT, DFT-D and MP2 calculations in cases where intramolecular BSSE is expected to be large.
dc.format.extent9
dc.language.isoeng
dc.relation.ispartofMolecular Physicsen
dc.rights© 2017 Informa UK Limited, trading as Taylor & Francis Group. This work has been made available online in accordance with the publisher’s policies. This is the author created accepted version manuscript following peer review and as such may differ slightly from the final published version. The final published version of this work is available at https://doi.org/10.1080/00268976.2017.1418029en
dc.subjectTyrosine-glycineen
dc.subjectBasis set superposition erroren
dc.subjectDensity functional theoryen
dc.subjectMP2en
dc.subjectDFT-Den
dc.subjectQD Chemistryen
dc.subjectNDASen
dc.subject.lccQDen
dc.titleIntramolecular BSSE and dispersion affect the structure of a dipeptide conformeren
dc.typeJournal articleen
dc.description.versionPostprinten
dc.contributor.institutionUniversity of St Andrews.School of Chemistryen
dc.contributor.institutionUniversity of St Andrews.EaSTCHEMen
dc.identifier.doihttps://doi.org/10.1080/00268976.2017.1418029
dc.description.statusPeer revieweden
dc.date.embargoedUntil2018-12-26


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