Homeobox genes in the development and regeneration of the cephalochordate Branchiostoma lanceolatum and the polychaete annelid Spirobranchus lamarcki
Abstract
The development of complex animal morphology requires the extremely sophisticated spatiotemporal coordination of cell behaviour and communication. Homeobox genes
encode transcription factors that are deployed in developmental processes to control the
expression of other genes in particular locations and contexts. Many homeobox genes are
highly conserved and act in similar roles between distantly-related animals that derive
from the roles of their ancestral orthologues. The way that these genes have differentially
evolved between taxa, and the effect that these changes have on the development and
morphology of animals, is critical to our understanding of metazoan evolution. One particular developmental context, the regeneration of missing tissue, offers a unique perspective on evolutionary developmental biology because of its relationship to ontogenic development and its surprising diversity of retention and process between animal taxa.
I examined the homeobox gene content of transcriptomes taken from the mature
and regenerating tissue of the post-anal tail of Branchiostoma lanceolatum, a well-studied
cephalochordate with a highly conserved genome, and the evolutionarily novel operculum
of Spirobranchus lamarcki, a sedentarian annelid. In S. lamarcki regeneration, a diverse
variety of homeobox genes is expressed, and the regenerative expression response is substantial. The discovery of several difficult-to-classify homeobox genes lead to the substantial expansion and improvement of the classification of a variety of homeobox genes undergoing unusual rapid and expansive evolution in the Spiralia, including dozens of TALE
and PRD class genes, a new orthology group, and a strange S. lamarcki Hox gene.
In B. lanceolatum, a similar diversity of expressed genes is observed but a milder
regenerative response. One transcriptomic sequence in particular, identified as Pax3/7, led
to the discovery that this well-studied gene has a previously unnoticed duplication in
cephalochordates. This discovery has implications for ongoing study of vertebrate and
cephalochordate neural plate border evolution.
Type
Thesis, PhD Doctor of Philosophy
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