Applied Mathematicshttps://hdl.handle.net/10023/922024-04-21T08:29:49Z2024-04-21T08:29:49ZInternal interannual variability in the extra-tropical stratosphereHatfield, Luke Anthonyhttps://hdl.handle.net/10023/294632024-03-12T03:01:21Z2021-11-30T00:00:00ZWe investigate persistent low-frequency variability of the stratospheric winter polar vortex in a rotating spherical shallow-water model under the action of topographic wave-forcing and radiative cooling to a simple time-varying equilibrium state representative of the seasonal cycle in solar heating. A range of modes of variability is obtained, dependent on wave forcing amplitude and characterized by the distribution of quiescent and disturbed winters, defined as winters in which the vortex is either close to radiative equilibrium, with low planetary wave amplitude, or else strongly disturbed from equilibrium by the wave forcing. At low forcing amplitude the vortex is typically quiescent every year, while at higher amplitude it is typically disturbed; in both cases there is little year-to-year variation of the vortex state. For a range of intermediate forcing amplitudes, however, the vortex transitions between quiescent and disturbed states from one winter to the next with a persistent and well-defined pattern of variability. To investigate the extent to which the low-frequency variability found here may be explained in terms of a low-latitude ywheel mechanism, we conduct additional experiments varying a linear drag on the zonal mean ow in the tropics and find that sufficiently strong drag can completely suppress the variability. The robustness of the variability is demonstrated by further experiments using a modified radiative equilibrium profile, associated with a tropical westerly flow: similar variability is obtained but the modified profile is less effective at constraining the tropical ow from a persistent easterly acceleration.
2021-11-30T00:00:00ZHatfield, Luke AnthonyWe investigate persistent low-frequency variability of the stratospheric winter polar vortex in a rotating spherical shallow-water model under the action of topographic wave-forcing and radiative cooling to a simple time-varying equilibrium state representative of the seasonal cycle in solar heating. A range of modes of variability is obtained, dependent on wave forcing amplitude and characterized by the distribution of quiescent and disturbed winters, defined as winters in which the vortex is either close to radiative equilibrium, with low planetary wave amplitude, or else strongly disturbed from equilibrium by the wave forcing. At low forcing amplitude the vortex is typically quiescent every year, while at higher amplitude it is typically disturbed; in both cases there is little year-to-year variation of the vortex state. For a range of intermediate forcing amplitudes, however, the vortex transitions between quiescent and disturbed states from one winter to the next with a persistent and well-defined pattern of variability. To investigate the extent to which the low-frequency variability found here may be explained in terms of a low-latitude ywheel mechanism, we conduct additional experiments varying a linear drag on the zonal mean ow in the tropics and find that sufficiently strong drag can completely suppress the variability. The robustness of the variability is demonstrated by further experiments using a modified radiative equilibrium profile, associated with a tropical westerly flow: similar variability is obtained but the modified profile is less effective at constraining the tropical ow from a persistent easterly acceleration.Partial differential equation modelling in cancer and developmentVilla, Chiarahttps://hdl.handle.net/10023/284322023-09-21T02:02:51Z2022-06-14T00:00:00ZThis thesis explores various partial differential equation (PDE) models of the spatiotemporal and evolutionary dynamics of cell populations in different problems in cancer and development. In particular, these models are used to investigate: (i) the emergence of intratumour phenotypic heterogeneity and the development of chemotherapeutic resistance in vascularised tumours; (ii) the formation of endothelial progenitor cell clusters during the early stages of vasculogenesis; (iii) mechanical pattern formation under different linear viscoelasticity assumptions for the extracellular matrix. The mathematical models proposed for these problems are formulated as systems of nonlinear and nonlocal PDEs, which provide a mean-field representation of the underlying cellular dynamics and pose a series of interesting analytical and numerical challenges. These are tackled by means of formal asymptotic methods, linear stability analyses and appropriate numerical schemes preventing the emergence of spurious oscillations. Numerical simulations, relying on parameter values drawn from the extant literature, complement the analytical results and are employed for in silico investigations qualitatively testing the model assumptions against empirical observations. The obtained results help us shed light on the hidden mechanisms responsible for the emergence of the studied phenomena in biology
and medicine, suggesting promising research perspectives.
2022-06-14T00:00:00ZVilla, ChiaraThis thesis explores various partial differential equation (PDE) models of the spatiotemporal and evolutionary dynamics of cell populations in different problems in cancer and development. In particular, these models are used to investigate: (i) the emergence of intratumour phenotypic heterogeneity and the development of chemotherapeutic resistance in vascularised tumours; (ii) the formation of endothelial progenitor cell clusters during the early stages of vasculogenesis; (iii) mechanical pattern formation under different linear viscoelasticity assumptions for the extracellular matrix. The mathematical models proposed for these problems are formulated as systems of nonlinear and nonlocal PDEs, which provide a mean-field representation of the underlying cellular dynamics and pose a series of interesting analytical and numerical challenges. These are tackled by means of formal asymptotic methods, linear stability analyses and appropriate numerical schemes preventing the emergence of spurious oscillations. Numerical simulations, relying on parameter values drawn from the extant literature, complement the analytical results and are employed for in silico investigations qualitatively testing the model assumptions against empirical observations. The obtained results help us shed light on the hidden mechanisms responsible for the emergence of the studied phenomena in biology
and medicine, suggesting promising research perspectives.Synthetic observational signatures of coronal heating mechanisms from 3D numerical simulationsFyfe, Lianne Elizabethhttps://hdl.handle.net/10023/282322023-08-30T11:30:14Z2022-06-14T00:00:00ZIn this thesis, we investigate the synthetic observables from 3D MHD simulations which explore coronal heating mechanisms. These models include the twisting of magnetic flux tubes, the propagation of transverse oscillations through complex braided magnetic fields and a coronal arcade driven by footpoint motions of different characteristic time scales.
Through the use of forward modelling, the numerical model results are transformed into synthetic emission data. Examining such data will teach us more about, and help us identify, the observable features caused by the dynamics and heating of the coronal plasma. It will also help us build a catalogue of characteristics of energy release in the solar corona. This brings numerical models and observations closer together by allowing us to compare models and observations in a meaningful way.
Most of the observables examined within this thesis are as one would expect with knowledge of the plasma parameters (i.e. the density, temperature and velocity field) but some of this information is not readily available from observations. We expected and observed line broadening in regions of fast outflows as a result of magnetic reconnection, high frequency signals when shorter time scale motions are present at the footpoints of a coronal arcade, and the impact the line-of-sight has on estimated kinetic energies. There are also signatures which are not necessarily obvious until the forward modelling is complete but nonetheless are intuitive after the fact. For example, waves helping identify regions of complex magnetic fields; coronal arcade structures are visible in Doppler velocity signatures as well as intensity images, and signatures of Alfvén and fast waves are present within coronal arcades. There is one feature we encounter which could be misinterpreted. During the model which examines transverse oscillations through a braided magnetic field, Doppler signatures are generated which look like those due to torsional motions. In fact, with prior knowledge of the simulation, these are the result of phase mixing and counter-propagating waves through a complex magnetic field.
Finally we round up by examining if there is a relation (more specifically ratio) between wave amplitudes and non-thermal line widths. In order to estimate wave energies, previous studies have used such a relation where the non-thermal line widths are a factor of the square root of 2 smaller than the root mean squared wave amplitudes; however different factors have been used in other studies. We focus on determining whether one true value does exist by examining the simulations already presented in this thesis.
2022-06-14T00:00:00ZFyfe, Lianne ElizabethIn this thesis, we investigate the synthetic observables from 3D MHD simulations which explore coronal heating mechanisms. These models include the twisting of magnetic flux tubes, the propagation of transverse oscillations through complex braided magnetic fields and a coronal arcade driven by footpoint motions of different characteristic time scales.
Through the use of forward modelling, the numerical model results are transformed into synthetic emission data. Examining such data will teach us more about, and help us identify, the observable features caused by the dynamics and heating of the coronal plasma. It will also help us build a catalogue of characteristics of energy release in the solar corona. This brings numerical models and observations closer together by allowing us to compare models and observations in a meaningful way.
Most of the observables examined within this thesis are as one would expect with knowledge of the plasma parameters (i.e. the density, temperature and velocity field) but some of this information is not readily available from observations. We expected and observed line broadening in regions of fast outflows as a result of magnetic reconnection, high frequency signals when shorter time scale motions are present at the footpoints of a coronal arcade, and the impact the line-of-sight has on estimated kinetic energies. There are also signatures which are not necessarily obvious until the forward modelling is complete but nonetheless are intuitive after the fact. For example, waves helping identify regions of complex magnetic fields; coronal arcade structures are visible in Doppler velocity signatures as well as intensity images, and signatures of Alfvén and fast waves are present within coronal arcades. There is one feature we encounter which could be misinterpreted. During the model which examines transverse oscillations through a braided magnetic field, Doppler signatures are generated which look like those due to torsional motions. In fact, with prior knowledge of the simulation, these are the result of phase mixing and counter-propagating waves through a complex magnetic field.
Finally we round up by examining if there is a relation (more specifically ratio) between wave amplitudes and non-thermal line widths. In order to estimate wave energies, previous studies have used such a relation where the non-thermal line widths are a factor of the square root of 2 smaller than the root mean squared wave amplitudes; however different factors have been used in other studies. We focus on determining whether one true value does exist by examining the simulations already presented in this thesis.An investigation of the magnetic field structure of flaring solar active regions using global magnetic field models and automated techniquesLove, Terihttps://hdl.handle.net/10023/278062023-06-26T15:57:55Z2022-06-14T00:00:00ZIn this thesis we explore methods for analysing flaring active regions, in particular studying X-class flares. We use global magnetic field models and machine learning techniques to carry out this analysis.
Using both potential field source surface (PFSS) models and magnetohydrostatic (MHS) models, the global magnetic skeletons for dates where X-class flares occurred are created. This allows the investigation of topological features found around flaring active regions. The flares analysed all have observable signatures found in Atmospheric Imaging Assembly data (onboard the Solar Dynamics Observatory), in the form of solar flare ribbons which can be mapped by eye to the footpoints of the separatrix structures located in the active regions.
Additionally, we consider techniques for identifying and locating the solar flare ribbons observed. The first technique utilises a convolutional neural network trained using images of M and C-class flares to allow the detection and classification of the types of flare ribbons observed. This includes two-ribbon, compact and limb flares, as well as quiet sun images. After training the network and identifying the flare ribbons in the data, we present an edge detection method which identifies the edges of the flare ribbons, making it easier to compare with the topological features previously found in the global field models. To find the best edge, two methods are presented which correct saturated pixels in the flare ribbon data. Afterwards the corrected images are passed into the edge detector which returns the ribbon edges, which are subsequently compared to the topological features previously found by calculating the Hausdorff and modified Hausdorff distances.
Overall these methods could be put into an automated pipeline which would identify solar flare ribbons in the observations using a CNN, then subsequently creating 3D magnetic field models to investigate the topology around the flare. With the final step taking both the observational and modelled data to be processed by the edge detection method and subsequently outputting a metric which identifies whether they are related. Note however this pipeline was not created in this thesis.
2022-06-14T00:00:00ZLove, TeriIn this thesis we explore methods for analysing flaring active regions, in particular studying X-class flares. We use global magnetic field models and machine learning techniques to carry out this analysis.
Using both potential field source surface (PFSS) models and magnetohydrostatic (MHS) models, the global magnetic skeletons for dates where X-class flares occurred are created. This allows the investigation of topological features found around flaring active regions. The flares analysed all have observable signatures found in Atmospheric Imaging Assembly data (onboard the Solar Dynamics Observatory), in the form of solar flare ribbons which can be mapped by eye to the footpoints of the separatrix structures located in the active regions.
Additionally, we consider techniques for identifying and locating the solar flare ribbons observed. The first technique utilises a convolutional neural network trained using images of M and C-class flares to allow the detection and classification of the types of flare ribbons observed. This includes two-ribbon, compact and limb flares, as well as quiet sun images. After training the network and identifying the flare ribbons in the data, we present an edge detection method which identifies the edges of the flare ribbons, making it easier to compare with the topological features previously found in the global field models. To find the best edge, two methods are presented which correct saturated pixels in the flare ribbon data. Afterwards the corrected images are passed into the edge detector which returns the ribbon edges, which are subsequently compared to the topological features previously found by calculating the Hausdorff and modified Hausdorff distances.
Overall these methods could be put into an automated pipeline which would identify solar flare ribbons in the observations using a CNN, then subsequently creating 3D magnetic field models to investigate the topology around the flare. With the final step taking both the observational and modelled data to be processed by the edge detection method and subsequently outputting a metric which identifies whether they are related. Note however this pipeline was not created in this thesis.Mathematical models of atmospheric convection : a Lagrangian perspectiveWallace, Samuel Josephhttps://hdl.handle.net/10023/276962023-05-30T02:01:09Z2023-06-13T00:00:00ZThis thesis presents extensions and enhancements to an existing Lagrangian model for atmospheric convection. The Moist Parcel-In-Cell (MPIC) method, developed by Dritschel et al. (2018), is a novel approach which avoids some shortcomings of
conventional large-eddy simulation models, particularly concerning the representation of sub-grid turbulence. While the method is in a relatively early stage, we provide case studies to show the model’s potential.
The first case study simulates the ascent of a rising thermal, subject to constant vertical wind shear. Using MPIC, we find that low to intermediate shear appears to promote cloud growth, but high shear tears the thermal apart. The air is
partitioned into cloud-air and dry-air components based on the liquid water content and the evolution of the enstrophy associated with each component suggests that the increasing shear is causing more dry air to become turbulent and influence the growth of the cloud.
Our second study analyses the potential energy in MPIC and its sensitivity to numerical parameters. The results show an abnormal growth in the total energy at early times, which is attributed to a failure to enforce incompressibility in
the method. The energy evolutions appear to converge with resolution and the numerical mixing parameters in the model for early to intermediate times, although the turbulent flow leads to greater discrepancies in the late-stage energy evolution.
Finally, we present a simulation of the shear-free atmospheric boundary layer, modelled through the implementation of surface fluxes of parcel attributes in MPIC. Our results show evidence of the two-layer entrainment zone structure observed in previous studies. Comparisons of the vertical enstrophy distribution and vorticity field further support this. We also compute entrainment rate parameters that suggest that MPIC underestimates entrainment compared to the zero-order model and overestimates entrainment when using the global buoyancy increment across the entire entrainment zone. Nonetheless, the entrainment rate in MPIC compares favourably to results in the literature when using a local buoyancy increment computed at the height of minimum buoyancy flux.
2023-06-13T00:00:00ZWallace, Samuel JosephThis thesis presents extensions and enhancements to an existing Lagrangian model for atmospheric convection. The Moist Parcel-In-Cell (MPIC) method, developed by Dritschel et al. (2018), is a novel approach which avoids some shortcomings of
conventional large-eddy simulation models, particularly concerning the representation of sub-grid turbulence. While the method is in a relatively early stage, we provide case studies to show the model’s potential.
The first case study simulates the ascent of a rising thermal, subject to constant vertical wind shear. Using MPIC, we find that low to intermediate shear appears to promote cloud growth, but high shear tears the thermal apart. The air is
partitioned into cloud-air and dry-air components based on the liquid water content and the evolution of the enstrophy associated with each component suggests that the increasing shear is causing more dry air to become turbulent and influence the growth of the cloud.
Our second study analyses the potential energy in MPIC and its sensitivity to numerical parameters. The results show an abnormal growth in the total energy at early times, which is attributed to a failure to enforce incompressibility in
the method. The energy evolutions appear to converge with resolution and the numerical mixing parameters in the model for early to intermediate times, although the turbulent flow leads to greater discrepancies in the late-stage energy evolution.
Finally, we present a simulation of the shear-free atmospheric boundary layer, modelled through the implementation of surface fluxes of parcel attributes in MPIC. Our results show evidence of the two-layer entrainment zone structure observed in previous studies. Comparisons of the vertical enstrophy distribution and vorticity field further support this. We also compute entrainment rate parameters that suggest that MPIC underestimates entrainment compared to the zero-order model and overestimates entrainment when using the global buoyancy increment across the entire entrainment zone. Nonetheless, the entrainment rate in MPIC compares favourably to results in the literature when using a local buoyancy increment computed at the height of minimum buoyancy flux.Applications of likelihood-free parameter inference methods on numerical models of cancer invasionXiao, Yunchenhttps://hdl.handle.net/10023/259522022-09-07T02:03:03Z2022-07-27T00:00:00ZIn this thesis, we present two different methods to estimate parameters within a Partial Differential Equation (PDE) model of cancer invasion and an Individual-based Model (IBM) derived from it. The PDE model was fitted to synthetic spatial 1D data generated from the model, and the IBM was fitted to authentic spatial 2D data derived from the invasion patterns observed in in vitro and ex vivo organotypic assays. The first estimation method is a likelihood-free approach related to Approximate Bayesian Computation (ABC). The second is a two-stage gradient matching method based on smoothing the data with a Generalized Additive Model (GAM) and matching gradients from the GAM to those from the model. Both methods performed well on spatial 1D synthetic data when the synthetic data was generated assuming no measurement errors. To increase realism we tested both methods with simulated measurement errors, and found that the ability to estimate some model parameters deteriorated rapidly as measurement error increased for the gradient matching method. The ABC method was more robust to the introduction of measurement errors.
For spatial 2D authentic data, we only applied the ABC method. The simulated patterns produced at the end of the estimation procedure were quantitatively close to the observed ones. In addition, most of the final parameter samples obtained in the spatial 2D inference passed a set of ABC posterior diagnostics, implying they are valid posteriors from the perspective of Bayesian inference. The ABC-derived calibration methods developed in this thesis are not limited to models of cancer invasion alone, and can potentially be applied in a wide variety of application areas where the system under examination can be described using PDE models.
2022-07-27T00:00:00ZXiao, YunchenIn this thesis, we present two different methods to estimate parameters within a Partial Differential Equation (PDE) model of cancer invasion and an Individual-based Model (IBM) derived from it. The PDE model was fitted to synthetic spatial 1D data generated from the model, and the IBM was fitted to authentic spatial 2D data derived from the invasion patterns observed in in vitro and ex vivo organotypic assays. The first estimation method is a likelihood-free approach related to Approximate Bayesian Computation (ABC). The second is a two-stage gradient matching method based on smoothing the data with a Generalized Additive Model (GAM) and matching gradients from the GAM to those from the model. Both methods performed well on spatial 1D synthetic data when the synthetic data was generated assuming no measurement errors. To increase realism we tested both methods with simulated measurement errors, and found that the ability to estimate some model parameters deteriorated rapidly as measurement error increased for the gradient matching method. The ABC method was more robust to the introduction of measurement errors.
For spatial 2D authentic data, we only applied the ABC method. The simulated patterns produced at the end of the estimation procedure were quantitatively close to the observed ones. In addition, most of the final parameter samples obtained in the spatial 2D inference passed a set of ABC posterior diagnostics, implying they are valid posteriors from the perspective of Bayesian inference. The ABC-derived calibration methods developed in this thesis are not limited to models of cancer invasion alone, and can potentially be applied in a wide variety of application areas where the system under examination can be described using PDE models.Numerical experiments on reconnection in magnetic field conﬁgurations containing null points and separatorsChambers, Daniel Thomashttps://hdl.handle.net/10023/256762024-03-13T03:01:40Z2021-10-26T00:00:00ZMagnetic ﬁelds containing null points offer favourable conditions for reconnection.
In this thesis, numerical experiments attempt to gain insight into the reconnection
process at these topological features.
Null point reconnection is studied under the assumption that the initial state is
a quasi-equilibrium. A non-equilibrium ﬁeld with a current density component
parallel to the fan plane is relaxed ideally to obtain the initial condition, forming
fan current layers centred on the null point. Rapid reconnection occurs at the
beginning of the resistive experiment, before there is a transition to impulsive
behaviour. The orientation of the initial current density relative to the strongest
magnetic ﬁeld in the fan plane determines the current layer dimensions and also
inﬂuences the reconnection rate.
A single separator magnetic ﬁeld is derived from the 2D Corrugated Sheet Pinch
by the addition of a perturbation magnetic ﬁeld. The evolution of the system is
investigated numerically, using the 3D ﬁeld with the pressure proﬁle from the 2D
case. The current is transferred from the original current sheet to the separatrix
surfaces and null point bifurcations occur.
A potential double separator ﬁeld is used as the basis for a study of reconnection at
multiply-connected null points. The potential ﬁeld is perturbed by the addition
of ﬂux rings and ideal relaxation results in a quasi-equilibrium with separator
current layers. In the resistive experiment, reconnection occurs at the centre of
the separators and its effects are localised.
In each of the experiments containing a single null point, reconnection occurs at
current layers in the vicinity of the null. When there are multiple nulls connected
by separators, the reconnection often takes place away from the nulls. However,
the dynamics of separator reconnection appear to be inﬂuenced by the choice of
initial conditions.
2021-10-26T00:00:00ZChambers, Daniel ThomasMagnetic ﬁelds containing null points offer favourable conditions for reconnection.
In this thesis, numerical experiments attempt to gain insight into the reconnection
process at these topological features.
Null point reconnection is studied under the assumption that the initial state is
a quasi-equilibrium. A non-equilibrium ﬁeld with a current density component
parallel to the fan plane is relaxed ideally to obtain the initial condition, forming
fan current layers centred on the null point. Rapid reconnection occurs at the
beginning of the resistive experiment, before there is a transition to impulsive
behaviour. The orientation of the initial current density relative to the strongest
magnetic ﬁeld in the fan plane determines the current layer dimensions and also
inﬂuences the reconnection rate.
A single separator magnetic ﬁeld is derived from the 2D Corrugated Sheet Pinch
by the addition of a perturbation magnetic ﬁeld. The evolution of the system is
investigated numerically, using the 3D ﬁeld with the pressure proﬁle from the 2D
case. The current is transferred from the original current sheet to the separatrix
surfaces and null point bifurcations occur.
A potential double separator ﬁeld is used as the basis for a study of reconnection at
multiply-connected null points. The potential ﬁeld is perturbed by the addition
of ﬂux rings and ideal relaxation results in a quasi-equilibrium with separator
current layers. In the resistive experiment, reconnection occurs at the centre of
the separators and its effects are localised.
In each of the experiments containing a single null point, reconnection occurs at
current layers in the vicinity of the null. When there are multiple nulls connected
by separators, the reconnection often takes place away from the nulls. However,
the dynamics of separator reconnection appear to be inﬂuenced by the choice of
initial conditions.Magnetohydrodynamic waves in the solar corona : a mathematical investigation of the role of resonant absorption and phase mixing in coronal heatingProkopyszyn, Alexanderhttps://hdl.handle.net/10023/234362021-10-13T11:01:39Z2021-06-29T00:00:00ZBackground: The Sun is a massive and highly dynamic ball of plasma, and oscillations in kinetic and magnetic energy are commonplace throughout its atmosphere. Since the plasma conducts electricity, we model the fluid using magnetohydrodynamics (MHD) instead of hydrodynamics which is used for non-ionised fluids. We study two MHD wave phenomena, namely, phase mixing and resonant absorption. These are both phenomena that occur exclusively in MHD fluids and do not occur in hydrodynamic fluids. We study their implications for the coronal heating problem and coronal seismology. The solar surface is significantly denser than the atmosphere, and we model it as a solid wall. In other words, we impose line-tied boundary conditions at the solar surface where the velocity is set equal to zero.
Aims:
1) The first research chapter introduces some of the key properties of footpoint driven Alfvén waves (a type of MHD wave) which are relevant for the rest of this thesis.
2) The third chapter calculates an upper bound for the heat that linear phase-mixed Alfvén waves can produce at observed frequencies and amplitudes to assess its viability as a coronal heating mechanism.
3) The fourth chapter tests if line-tied boundary conditions still apply in a resonant absorption experiment where the transverse length-scales can be very short.
Methods:
We take an analytic and theoretical approach to solving each problem and then check the results numerically.
Results:
1) We show that the growth of energy in closed loops for a sinusoidal footpoint driver is highly dependent on the driver frequency. If a resonance is excited, then the energy grows quadratically with time, and for a broadband driver, the energy grows linearly on average. If the loop is partially closed (i.e. only a fraction of the wave amplitude reflects at the boundary), the energy will converge towards a steady-state in which the energy of the loop remains constant with time.
2) We calculate an upper bound for the heat produced by phase-mixed Alfvén waves and find that it is, on average, too small to play a significant role in coronal heating.
3) We show that if the length-scales perpendicular or parallel to the boundary is sufficiently short, imposing line-tied boundary conditions may no longer be valid. However, researchers may wish to continue to use them in their models for their simplicity and ability to significantly reduce computation time if they understand and are aware of their limitations.
2021-06-29T00:00:00ZProkopyszyn, AlexanderBackground: The Sun is a massive and highly dynamic ball of plasma, and oscillations in kinetic and magnetic energy are commonplace throughout its atmosphere. Since the plasma conducts electricity, we model the fluid using magnetohydrodynamics (MHD) instead of hydrodynamics which is used for non-ionised fluids. We study two MHD wave phenomena, namely, phase mixing and resonant absorption. These are both phenomena that occur exclusively in MHD fluids and do not occur in hydrodynamic fluids. We study their implications for the coronal heating problem and coronal seismology. The solar surface is significantly denser than the atmosphere, and we model it as a solid wall. In other words, we impose line-tied boundary conditions at the solar surface where the velocity is set equal to zero.
Aims:
1) The first research chapter introduces some of the key properties of footpoint driven Alfvén waves (a type of MHD wave) which are relevant for the rest of this thesis.
2) The third chapter calculates an upper bound for the heat that linear phase-mixed Alfvén waves can produce at observed frequencies and amplitudes to assess its viability as a coronal heating mechanism.
3) The fourth chapter tests if line-tied boundary conditions still apply in a resonant absorption experiment where the transverse length-scales can be very short.
Methods:
We take an analytic and theoretical approach to solving each problem and then check the results numerically.
Results:
1) We show that the growth of energy in closed loops for a sinusoidal footpoint driver is highly dependent on the driver frequency. If a resonance is excited, then the energy grows quadratically with time, and for a broadband driver, the energy grows linearly on average. If the loop is partially closed (i.e. only a fraction of the wave amplitude reflects at the boundary), the energy will converge towards a steady-state in which the energy of the loop remains constant with time.
2) We calculate an upper bound for the heat produced by phase-mixed Alfvén waves and find that it is, on average, too small to play a significant role in coronal heating.
3) We show that if the length-scales perpendicular or parallel to the boundary is sufficiently short, imposing line-tied boundary conditions may no longer be valid. However, researchers may wish to continue to use them in their models for their simplicity and ability to significantly reduce computation time if they understand and are aware of their limitations.Transition region blinkersBewsher, Daniellehttps://hdl.handle.net/10023/220212022-04-12T09:12:57Z2003-01-01T00:00:00ZBlinkers are small intensity enhancements seen in the transition region of the solar atmosphere. They are important because they give us a unique insight into the transition region which until recently, has not been studied in much detail. An automated method of identifying blinkers is presented and used to identify blinkers in the quiet Sun and active regions from SOHO/CDS O V data. The general properties of the blinkers are discussed. They have typical areas of 3 x 10⁷ km² and lifetimes of 16 minutes. Their typical global frequency and intensity enhancement factors in the quiet Sun are 7s ⁻¹ and 1.8, respectively, whereas these values increase in active regions to 13s⁻¹and 2.4. Blinkers are best seen in the O V (629Å) transition-region line, but they also have strong signatures in O IV (554Å), and the chromospheric line, He I (584Å). The strongest O V blinkers can also be identified in O III (599Å). No significant signatures are found in the coronal lines Mg IX (368 Å) and Mg X (624 Å) for quiet Sun blinkers, but some increases can be seen in active-region blinkers. The ratios of the oxygen lines in blinkers were found to be flat confirming the result that blinkers are not temperature events, but are either density enhancements or increases in filling factor. Blinkers appear to occur preferentially over regions of enhanced chromospheric, transition region or coronal emission such as network boundaries. The plasma velocities of the O V blinkers and the chromosphere below have been studied. The Doppler and non-thermal velocities found are preferentially more red-shifted and greater than the normal chromospheric and transition region plasma, respectively. The ranges of these enhanced velocities, however, are no larger than the typical spread of Doppler and non-thermal velocities in these regions. Analysis of the magnetic field below blinkers shows that blinkers preferentially occur above regions of large or strong magnetic fragments with 55% of quiet Sun and 50% of active-region blinkers occurring in regions where one polarity dominates. Active-region blinkers are found above both active-region (plage) magnetic fields, as well as above the umbra and penumbra of sunspots. There appears to be no correlation between the strength of these single polarity magnetic fields or the ratio of mixed magnetic fields beneath blinkers and blinker characteristics. Furthermore, following a comparison of explosive events and blinkers, only one case is found where the two phenomena are coincident. Initial probability analysis suggests that the hypothesis that explosive events occur independently of blinkers cannot be ruled out.
2003-01-01T00:00:00ZBewsher, DanielleBlinkers are small intensity enhancements seen in the transition region of the solar atmosphere. They are important because they give us a unique insight into the transition region which until recently, has not been studied in much detail. An automated method of identifying blinkers is presented and used to identify blinkers in the quiet Sun and active regions from SOHO/CDS O V data. The general properties of the blinkers are discussed. They have typical areas of 3 x 10⁷ km² and lifetimes of 16 minutes. Their typical global frequency and intensity enhancement factors in the quiet Sun are 7s ⁻¹ and 1.8, respectively, whereas these values increase in active regions to 13s⁻¹and 2.4. Blinkers are best seen in the O V (629Å) transition-region line, but they also have strong signatures in O IV (554Å), and the chromospheric line, He I (584Å). The strongest O V blinkers can also be identified in O III (599Å). No significant signatures are found in the coronal lines Mg IX (368 Å) and Mg X (624 Å) for quiet Sun blinkers, but some increases can be seen in active-region blinkers. The ratios of the oxygen lines in blinkers were found to be flat confirming the result that blinkers are not temperature events, but are either density enhancements or increases in filling factor. Blinkers appear to occur preferentially over regions of enhanced chromospheric, transition region or coronal emission such as network boundaries. The plasma velocities of the O V blinkers and the chromosphere below have been studied. The Doppler and non-thermal velocities found are preferentially more red-shifted and greater than the normal chromospheric and transition region plasma, respectively. The ranges of these enhanced velocities, however, are no larger than the typical spread of Doppler and non-thermal velocities in these regions. Analysis of the magnetic field below blinkers shows that blinkers preferentially occur above regions of large or strong magnetic fragments with 55% of quiet Sun and 50% of active-region blinkers occurring in regions where one polarity dominates. Active-region blinkers are found above both active-region (plage) magnetic fields, as well as above the umbra and penumbra of sunspots. There appears to be no correlation between the strength of these single polarity magnetic fields or the ratio of mixed magnetic fields beneath blinkers and blinker characteristics. Furthermore, following a comparison of explosive events and blinkers, only one case is found where the two phenomena are coincident. Initial probability analysis suggests that the hypothesis that explosive events occur independently of blinkers cannot be ruled out.Two-component relativistic wave equations for spin 1/2 particlesKoutroulos, Christos Georgehttps://hdl.handle.net/10023/219912022-03-10T15:16:08Z1974-01-01T00:00:00Z1974-01-01T00:00:00ZKoutroulos, Christos GeorgeMulti-dimensional modelling of physiologically and temporally structured populationsDixon, Camilla Elizabethhttps://hdl.handle.net/10023/219432022-02-25T03:06:46Z2004-01-01T00:00:00ZPhysiologically-structured population counts are sometimes the only available source of information about a population. Because such data are often sparse and noisy, they are difficult to model. Moreover the parameters of interest may be underlying demographic rates rather than population abundance. In this thesis, the possibility of using smoothing splines, demographic processes and environmental variables to improve estimates of birth and death rates from physiologically-structured population counts is explored.
A smooth physiologically-structured population model is proposed which makes appropriate use of demographic processes and allows explicit space-time dependence in estimated quantities (birth and death rates). A model fitting process is also defined. The model is tested using simulated data and is applied to Dover sole (Solea solea) data from the Bristol Channel. It can be applied when the life-history stages are defined by age. The method presented avoids mis-specification bias in birth and death rate estimates and improves their precision. It allows study of the relationship between vital rate estimates and environmental variables and, when coded, is straightforward to apply.
The more general inverse problem of obtaining birth, death and growth rates from stage abundances is also examined, when the physiological trait distinguishing stages need not be age. It is proven mathematically that unique solutions do not exist unless the trait is age, though limits for the growth and hence birth and death rates do exist when the growth rate is independent of the physiological trait. Simulations are used to demonstrate that plausible estimates of the 'true' birth, death and growth rates, cannot be identified in practice.
To overcome this difficulty, stage-age experiment data may be incorporated into physiologically-structured population models. A new method is discussed for doing this in a statistically justified manner.
2004-01-01T00:00:00ZDixon, Camilla ElizabethPhysiologically-structured population counts are sometimes the only available source of information about a population. Because such data are often sparse and noisy, they are difficult to model. Moreover the parameters of interest may be underlying demographic rates rather than population abundance. In this thesis, the possibility of using smoothing splines, demographic processes and environmental variables to improve estimates of birth and death rates from physiologically-structured population counts is explored.
A smooth physiologically-structured population model is proposed which makes appropriate use of demographic processes and allows explicit space-time dependence in estimated quantities (birth and death rates). A model fitting process is also defined. The model is tested using simulated data and is applied to Dover sole (Solea solea) data from the Bristol Channel. It can be applied when the life-history stages are defined by age. The method presented avoids mis-specification bias in birth and death rate estimates and improves their precision. It allows study of the relationship between vital rate estimates and environmental variables and, when coded, is straightforward to apply.
The more general inverse problem of obtaining birth, death and growth rates from stage abundances is also examined, when the physiological trait distinguishing stages need not be age. It is proven mathematically that unique solutions do not exist unless the trait is age, though limits for the growth and hence birth and death rates do exist when the growth rate is independent of the physiological trait. Simulations are used to demonstrate that plausible estimates of the 'true' birth, death and growth rates, cannot be identified in practice.
To overcome this difficulty, stage-age experiment data may be incorporated into physiologically-structured population models. A new method is discussed for doing this in a statistically justified manner.The numerical solution of finite difference equations with applications to problems in fluid dynamicsMitchell, Andrew Ronaldhttps://hdl.handle.net/10023/218712021-11-16T11:05:05Z1956-01-01T00:00:00Z1956-01-01T00:00:00ZMitchell, Andrew RonaldA model for solar flares and coronal heating based on magnetohydrodynamic avalanchesReid, Jackhttps://hdl.handle.net/10023/214892021-02-24T03:08:13Z2020-12-01T00:00:00ZThe coronal heating problem addresses how temperatures in the solar atmosphere increase by millions of degrees, moving up from the cool surface, into the upper reaches of the atmosphere. This heating, known to be attributable to the magnetic field, has attracted several possible explanations. Attention here focuses on the viability and onset of magnetohydrodynamic avalanches.
One means of transferring energy from interior convective motions is through photospheric motions, for example granulation and super-granulation. The power transferred by these photospheric motions stores energy in the global coronal magnetic field, and in coronal loops within active regions. The fields become highly braided, such that an ideal kink-mode instability occurs within one strand of a loop. Then, this instability rapidly expands, destabilizing the surrounding magnetic field, and destroying neighbouring threads. Bursty events occur in an intermittent, impulsive series, Parker's so-called nanoflares, above a largely steady background.
This heating is then investigated in order to determine the respective contributions of the physical mechanisms of viscosity and resistivity. Arbitrary distributions of non-uniform heating occur across the domain. The localization and impulsiveness are investigated in respect of field-aligned heating properties.
These heating profiles are tested in a hydrodynamic model of single coronal strands. This heating is found capable of maintaining approximately coronal conditions. Interestingly, three-dimensional MHD simulations and field-aligned, one-dimensional models produce similar behaviours, apart from in velocity, and this may have observable consequences.
Throughout, magnetic reconnection is vital in contributing to coronal heating. Therefore, the onset and locations of reconnection are identified, and compared with several possible indicators. The widely used squashing factor, Q, little agrees with the sites of reconnection in a braided MHD field.
Based on these results, magnetohydrodynamic avalanches can occur and produce sufficient energy to maintain the elevated temperatures of coronal loops.
2020-12-01T00:00:00ZReid, JackThe coronal heating problem addresses how temperatures in the solar atmosphere increase by millions of degrees, moving up from the cool surface, into the upper reaches of the atmosphere. This heating, known to be attributable to the magnetic field, has attracted several possible explanations. Attention here focuses on the viability and onset of magnetohydrodynamic avalanches.
One means of transferring energy from interior convective motions is through photospheric motions, for example granulation and super-granulation. The power transferred by these photospheric motions stores energy in the global coronal magnetic field, and in coronal loops within active regions. The fields become highly braided, such that an ideal kink-mode instability occurs within one strand of a loop. Then, this instability rapidly expands, destabilizing the surrounding magnetic field, and destroying neighbouring threads. Bursty events occur in an intermittent, impulsive series, Parker's so-called nanoflares, above a largely steady background.
This heating is then investigated in order to determine the respective contributions of the physical mechanisms of viscosity and resistivity. Arbitrary distributions of non-uniform heating occur across the domain. The localization and impulsiveness are investigated in respect of field-aligned heating properties.
These heating profiles are tested in a hydrodynamic model of single coronal strands. This heating is found capable of maintaining approximately coronal conditions. Interestingly, three-dimensional MHD simulations and field-aligned, one-dimensional models produce similar behaviours, apart from in velocity, and this may have observable consequences.
Throughout, magnetic reconnection is vital in contributing to coronal heating. Therefore, the onset and locations of reconnection are identified, and compared with several possible indicators. The widely used squashing factor, Q, little agrees with the sites of reconnection in a braided MHD field.
Based on these results, magnetohydrodynamic avalanches can occur and produce sufficient energy to maintain the elevated temperatures of coronal loops.Numerical modelling of MHD waves in coronal loopsVan Damme, Hendrik-Janhttps://hdl.handle.net/10023/210572020-12-08T03:08:29Z2020-12-03T00:00:00ZWaves in the solar corona have been investigated for many years, as a potential coronal heating mechanism and in the context of coronal seismology, and they play an important role in our understanding of the solar corona. In this thesis, we present the results of numerical simulations of transverse MHD waves in coronal loops. In a first study, we consider an atmospheric model for a coronal loop where the chromosphere is included as a simple mass reservoir and the effects of gravity, thermal conduction and optically thin radiation are taken into account, and we investigate the dissipation of phase-mixed, driven Alfvén waves and the subsequent heating and evaporation from the lower atmosphere. It has been argued that this evaporation can significantly affect the transverse density profile in the boundary of the loop, thereby changing the Alfvén speed gradient and the phase mixing process. We analyse the heating from the phase-mixed Alfvén waves and the evaporation and find that in our setup, with a high-frequency driver, the effect of the evaporation on the phase mixing process is negligible as a significant amount of the wave energy in the corona is lost to the lower atmosphere.
Waves usually originate in the lower parts of the solar atmosphere, where the convective motions beneath the photosphere shuffle the magnetic field around, and they are then transmitted into the corona. However, recent observations have shown that transverse MHD waves can also be generated in-situ in the corona, by the collision of counter-propagating plasma clumps (coronal rain). When falling down, these coronal rain clumps can collide with upflows or other coronal rain clumps, and generate transverse oscillations. In order to investigate this mechanism, we develop a 2D model for the collision of counter-propagating plasma clumps based on detailed observations and statistical analysis of these events and study the generation of transverse MHD waves. We first study the relationship between various physical parameters of the clumps and the resulting oscillations and subsequently apply the model using observed coronal rain properties and investigate the likelihood of collisions and oscillations in coronal loops. In our simulations, we find that the properties of the oscillations are linked to the properties of the counter-propagating clumps, but also that coronal rain collisions and oscillations are rather unlikely in active region loops, due to the relatively large background pressure and magnetic field strength.
2020-12-03T00:00:00ZVan Damme, Hendrik-JanWaves in the solar corona have been investigated for many years, as a potential coronal heating mechanism and in the context of coronal seismology, and they play an important role in our understanding of the solar corona. In this thesis, we present the results of numerical simulations of transverse MHD waves in coronal loops. In a first study, we consider an atmospheric model for a coronal loop where the chromosphere is included as a simple mass reservoir and the effects of gravity, thermal conduction and optically thin radiation are taken into account, and we investigate the dissipation of phase-mixed, driven Alfvén waves and the subsequent heating and evaporation from the lower atmosphere. It has been argued that this evaporation can significantly affect the transverse density profile in the boundary of the loop, thereby changing the Alfvén speed gradient and the phase mixing process. We analyse the heating from the phase-mixed Alfvén waves and the evaporation and find that in our setup, with a high-frequency driver, the effect of the evaporation on the phase mixing process is negligible as a significant amount of the wave energy in the corona is lost to the lower atmosphere.
Waves usually originate in the lower parts of the solar atmosphere, where the convective motions beneath the photosphere shuffle the magnetic field around, and they are then transmitted into the corona. However, recent observations have shown that transverse MHD waves can also be generated in-situ in the corona, by the collision of counter-propagating plasma clumps (coronal rain). When falling down, these coronal rain clumps can collide with upflows or other coronal rain clumps, and generate transverse oscillations. In order to investigate this mechanism, we develop a 2D model for the collision of counter-propagating plasma clumps based on detailed observations and statistical analysis of these events and study the generation of transverse MHD waves. We first study the relationship between various physical parameters of the clumps and the resulting oscillations and subsequently apply the model using observed coronal rain properties and investigate the likelihood of collisions and oscillations in coronal loops. In our simulations, we find that the properties of the oscillations are linked to the properties of the counter-propagating clumps, but also that coronal rain collisions and oscillations are rather unlikely in active region loops, due to the relatively large background pressure and magnetic field strength.Electron acceleration in auroral field-aligned currentsCran-McGreehin, Alexandra P.https://hdl.handle.net/10023/195202020-04-10T15:55:03Z2006-11-30T00:00:00ZField-aligned currents at Earth's high latitudes are principally carried by accelerated electrons. Current
densities, typically ~µAm⁻² at ionospheric altitudes, are sustained by parallel potential drops of ~100 - 1000 V. This Thesis
presents Vlasov models of upward and downward current regions, where electrons are
described via distribution functions. The ion
density profile is fixed, and quasi-neutrality is invoked to solve
numerically for the potential variation.
In both cases, an ambipolar electric field traps ionospheric electrons. For downward currents, an energetic ionospheric electron beam emerges into the magnetosphere where it is accelerated around the B/n
peak at altitudes of 500 - 6000 km to carry the current. The electric field maximises just Earthward of
the
B/n peak. The magnitude and altitude of the potential is found to depend solely on the equilibrium
properties immediately above the B/n peak. An analytic non-linear current-voltage relation, analagous to the linear
Knight relation for upward currents, is derived.
Energetic magnetospheric electrons precipitate into the ionosphere to carry upward currents. The continuous
potential variation is solved for current densities ~1 µAm⁻². Acceleration extends above the B/n
peak for ~1 R[sub]E, and is increasingly concentrated at the peak for higher current densities. The presence
of
mirroring electrons is vital to the system, as they play a major role in satisfying quasi-neutrality, and
support the majority of the parallel electric field.
Ion outflow is a feature of both current
regions, but is stronger and extends to lower altitudes for down¬
ward currents: this is presented as a possible explanation for observed lower-altitude acceleration in downward currents
compared to upward currents.
The effect of downward currents on E region number density is studied using an Alfven wave model
of
magnetosphere-ionosphere interaction, employing a height-integrated Pedersen conductivity. It is found
that
significant E region depletion and current broadening are more common on the nightside than on the
dayside, and occur in ~ 10 - 100 s.
2006-11-30T00:00:00ZCran-McGreehin, Alexandra P.Field-aligned currents at Earth's high latitudes are principally carried by accelerated electrons. Current
densities, typically ~µAm⁻² at ionospheric altitudes, are sustained by parallel potential drops of ~100 - 1000 V. This Thesis
presents Vlasov models of upward and downward current regions, where electrons are
described via distribution functions. The ion
density profile is fixed, and quasi-neutrality is invoked to solve
numerically for the potential variation.
In both cases, an ambipolar electric field traps ionospheric electrons. For downward currents, an energetic ionospheric electron beam emerges into the magnetosphere where it is accelerated around the B/n
peak at altitudes of 500 - 6000 km to carry the current. The electric field maximises just Earthward of
the
B/n peak. The magnitude and altitude of the potential is found to depend solely on the equilibrium
properties immediately above the B/n peak. An analytic non-linear current-voltage relation, analagous to the linear
Knight relation for upward currents, is derived.
Energetic magnetospheric electrons precipitate into the ionosphere to carry upward currents. The continuous
potential variation is solved for current densities ~1 µAm⁻². Acceleration extends above the B/n
peak for ~1 R[sub]E, and is increasingly concentrated at the peak for higher current densities. The presence
of
mirroring electrons is vital to the system, as they play a major role in satisfying quasi-neutrality, and
support the majority of the parallel electric field.
Ion outflow is a feature of both current
regions, but is stronger and extends to lower altitudes for down¬
ward currents: this is presented as a possible explanation for observed lower-altitude acceleration in downward currents
compared to upward currents.
The effect of downward currents on E region number density is studied using an Alfven wave model
of
magnetosphere-ionosphere interaction, employing a height-integrated Pedersen conductivity. It is found
that
significant E region depletion and current broadening are more common on the nightside than on the
dayside, and occur in ~ 10 - 100 s.Modelling solar coronal magnetic field evolutionGoldstraw, Erin Elizabethhttps://hdl.handle.net/10023/192382021-06-30T02:01:36Z2019-12-03T00:00:00ZFootpoint motions at the photosphere can inject energy into the magnetic ﬁeld in the solar
corona. This energy is then released in the corona as heat. There are many mathematical
approaches to model the evolution of these magnetic ﬁelds. Magnetohydrodynamics (MHD)
provides the most convenient and practical approach. However, there are many alternative
approximate methods. It is diﬃcult to know when an approximate method is valid and
how well the assumptions need to be satisﬁed for the solutions to be accurate enough.
To illustrate this, a simple experiment is performed. Four approximate methods, including
Reduced MHD (RMHD), are used to model the evolution of a footpoint driven coronal loop
through sequences of equilibria. The predicted evolution from each method is compared
to the solution from full MHD simulations to test the accuracy of each method when
the relevant assumptions are adjusted. After this initial test, the validity of RMHD is
investigated for the particular case of the magnetic ﬁeld evolution involving the development
of the tearing instability. Full MHD simulations are used to argue the applicability of the
assumptions and conditions of RMHD for this evolution. The potential of this setup to
heat the corona is considered by performing full MHD simulations including thermodynamic
processes of optically thin radiation and thermal conduction. These additional processes
are not included in RMHD.
2019-12-03T00:00:00ZGoldstraw, Erin ElizabethFootpoint motions at the photosphere can inject energy into the magnetic ﬁeld in the solar
corona. This energy is then released in the corona as heat. There are many mathematical
approaches to model the evolution of these magnetic ﬁelds. Magnetohydrodynamics (MHD)
provides the most convenient and practical approach. However, there are many alternative
approximate methods. It is diﬃcult to know when an approximate method is valid and
how well the assumptions need to be satisﬁed for the solutions to be accurate enough.
To illustrate this, a simple experiment is performed. Four approximate methods, including
Reduced MHD (RMHD), are used to model the evolution of a footpoint driven coronal loop
through sequences of equilibria. The predicted evolution from each method is compared
to the solution from full MHD simulations to test the accuracy of each method when
the relevant assumptions are adjusted. After this initial test, the validity of RMHD is
investigated for the particular case of the magnetic ﬁeld evolution involving the development
of the tearing instability. Full MHD simulations are used to argue the applicability of the
assumptions and conditions of RMHD for this evolution. The potential of this setup to
heat the corona is considered by performing full MHD simulations including thermodynamic
processes of optically thin radiation and thermal conduction. These additional processes
are not included in RMHD.Mathematical modelling of cancer invasion and metastatic spreadFranssen, Linnea Christinhttps://hdl.handle.net/10023/190802021-04-21T08:48:48Z2019-12-03T00:00:00ZMetastatic spread—the dissemination of cancer cells from a primary tumour with subsequent re-colonisation at secondary sites in the body—causes around 90% of cancer-related deaths. Mathematical modelling may provide a complementary approach to help understand the complex mechanisms underlying metastasis. In particular, the spatiotemporal evolution of individual cancer cells during the so-called invasion-metastasis cascade—i.e. during cancer cell invasion, intravasation, vascular travel, extravasation and metastatic growth—is an aspect not yet explored through existing mathematical models. In this thesis, such a spatially explicit hybrid multi-organ metastasis modelling framework is developed. It describes the invasive growth dynamics of individual cancer cells both at a primary site and at potential secondary metastatic sites in the body, as well as their transport from the primary to the secondary sites. Throughout, the interactions between the cancer cells, matrix-degrading enzymes (MDEs) and the extracellular matrix (ECM) are accounted for. Furthermore, the individual-based framework models phenotypic variation by distinguishing between cancer cells of an epithelial-like, a mesenchymal-like and a mixed phenotype. It also describes permanent and transient mutations between these cell phenotypes in the form of epithelial-mesenchymal transition (EMT) and its reverse process mesenchymal-epithelial transition (MET). Both of these mechanisms are implemented at the biologically appropriate locations of the invasion-metastasis cascade. Finally, cancer cell dormancy and death at the metastatic sites are considered to model the frequently observed maladaptation of metastasised cancer cells to their new microenvironments. To investigate the EMT-process further, an additional three-dimensional discrete-continuum model of EMT- and MET-dependent cancer cell invasion is developed. It consists of a hybrid system of partial and stochastic differential equations that describe the evolution of epithelial-like and mesenchymal-like cancer cells, again under the consideration of MDE concentrations and the ECM density. Using inverse parameter estimation and sensitivity analysis, this model is calibrated to an in vitro organotypic assay experiment that examines the invasion of HSC-3 cancer cells.
2019-12-03T00:00:00ZFranssen, Linnea ChristinMetastatic spread—the dissemination of cancer cells from a primary tumour with subsequent re-colonisation at secondary sites in the body—causes around 90% of cancer-related deaths. Mathematical modelling may provide a complementary approach to help understand the complex mechanisms underlying metastasis. In particular, the spatiotemporal evolution of individual cancer cells during the so-called invasion-metastasis cascade—i.e. during cancer cell invasion, intravasation, vascular travel, extravasation and metastatic growth—is an aspect not yet explored through existing mathematical models. In this thesis, such a spatially explicit hybrid multi-organ metastasis modelling framework is developed. It describes the invasive growth dynamics of individual cancer cells both at a primary site and at potential secondary metastatic sites in the body, as well as their transport from the primary to the secondary sites. Throughout, the interactions between the cancer cells, matrix-degrading enzymes (MDEs) and the extracellular matrix (ECM) are accounted for. Furthermore, the individual-based framework models phenotypic variation by distinguishing between cancer cells of an epithelial-like, a mesenchymal-like and a mixed phenotype. It also describes permanent and transient mutations between these cell phenotypes in the form of epithelial-mesenchymal transition (EMT) and its reverse process mesenchymal-epithelial transition (MET). Both of these mechanisms are implemented at the biologically appropriate locations of the invasion-metastasis cascade. Finally, cancer cell dormancy and death at the metastatic sites are considered to model the frequently observed maladaptation of metastasised cancer cells to their new microenvironments. To investigate the EMT-process further, an additional three-dimensional discrete-continuum model of EMT- and MET-dependent cancer cell invasion is developed. It consists of a hybrid system of partial and stochastic differential equations that describe the evolution of epithelial-like and mesenchymal-like cancer cells, again under the consideration of MDE concentrations and the ECM density. Using inverse parameter estimation and sensitivity analysis, this model is calibrated to an in vitro organotypic assay experiment that examines the invasion of HSC-3 cancer cells.Theoretical models of charged particle acceleration motivated by solar flaresBorissov, Alexeihttps://hdl.handle.net/10023/186142019-10-07T08:20:37Z2019-06-25T00:00:00ZIn this thesis we examine non-thermal particle behaviour in the presence of
modelled electromagnetic ﬁelds motivated by various aspects of solar ﬂares.
We ﬁrst investigate particle dynamics in magnetic reconnection scenarios,
in particular 2D reconnection in force-free current sheets and 3D separator
reconnection. The electromagnetic ﬁelds are obtained by performing resistive
magnetohydrodynamic (MHD) simulations with a non-zero anomalous resistivity
speciﬁed in regions where the local current density exceeds a speciﬁed
threshold. Test particle orbits and energy spectra are computed in the resulting
electromagnetic ﬁelds using the relativistic guiding centre equations. Motivated
by the enhanced anomalous resistivity, which is several orders of magnitude
greater than the Spitzer resistivity, pitch angle scattering linked to the resistivity
is introduced into guiding centre formalism when the test particle is located in
regions of non-zero resistivity.
In 2D reconnection, pitch angle scattering modiﬁes the particle trajectories,
energy gain and orbit duration. In certain cases, pitch angle scattering allows
test particles to gain more energy than would be possible in the absence of
scattering due to particles traversing the reconnection region multiple times, hence
experiencing a parallel electric ﬁeld component along a greater portion of their
orbits. We observe many of the same phenomena in 3D separator reconnection
simulations, however changes in particle energy spectra are minimal in comparison
to the 2D case.
We also investigate test particle behaviour in an analytical model of a collapsing
magnetic trap with the inclusion of a jet braking region at the loop apex, which
consists of an indentation in the loops caused by an interaction of a reconnection
outﬂow with low lying magnetic ﬁeld. New types of particle orbits that are not
observed in the absence of the braking jet are characterised. The effects of different
trap parameters on particle energisation and orbit behaviour are also examined.
2019-06-25T00:00:00ZBorissov, AlexeiIn this thesis we examine non-thermal particle behaviour in the presence of
modelled electromagnetic ﬁelds motivated by various aspects of solar ﬂares.
We ﬁrst investigate particle dynamics in magnetic reconnection scenarios,
in particular 2D reconnection in force-free current sheets and 3D separator
reconnection. The electromagnetic ﬁelds are obtained by performing resistive
magnetohydrodynamic (MHD) simulations with a non-zero anomalous resistivity
speciﬁed in regions where the local current density exceeds a speciﬁed
threshold. Test particle orbits and energy spectra are computed in the resulting
electromagnetic ﬁelds using the relativistic guiding centre equations. Motivated
by the enhanced anomalous resistivity, which is several orders of magnitude
greater than the Spitzer resistivity, pitch angle scattering linked to the resistivity
is introduced into guiding centre formalism when the test particle is located in
regions of non-zero resistivity.
In 2D reconnection, pitch angle scattering modiﬁes the particle trajectories,
energy gain and orbit duration. In certain cases, pitch angle scattering allows
test particles to gain more energy than would be possible in the absence of
scattering due to particles traversing the reconnection region multiple times, hence
experiencing a parallel electric ﬁeld component along a greater portion of their
orbits. We observe many of the same phenomena in 3D separator reconnection
simulations, however changes in particle energy spectra are minimal in comparison
to the 2D case.
We also investigate test particle behaviour in an analytical model of a collapsing
magnetic trap with the inclusion of a jet braking region at the loop apex, which
consists of an indentation in the loops caused by an interaction of a reconnection
outﬂow with low lying magnetic ﬁeld. New types of particle orbits that are not
observed in the absence of the braking jet are characterised. The effects of different
trap parameters on particle energisation and orbit behaviour are also examined.Mathematical modelling of tumour-immune competition tumour growth : discrete and continuum approachesMacfarlane, Fiona Ruthhttps://hdl.handle.net/10023/181942021-03-29T10:07:34Z2019-12-03T00:00:00ZThe ability of the human immune system to detect and remove cancer cells is exploited in the development of immunotherapy techniques. However, further understanding of these mechanisms is required and can be achieved through the use of mathematical models. In this thesis, we develop a simple individual-based model of cell movement and illustrate the ability of our model to qualitatively reproduce the migration patterns of immune cells that have been observed in single cell tracking experiments. We then extend the model to describe the spatio-temporal interactions between dendritic cells, cytotoxic T cells and a solid tumour. Through further extension of the model, we explicitly consider the immune recognition of evolving tumour antigens. Computational simulations of our models further clarify the conditions for the onset of a successful immune action against cancer cells and may suggest possible targets to improve the efficacy of immunotherapy. Mathematically, individual-based models can be limited in their amenability to different analysis techniques which are better suited to continuum models. To overcome this, we aim to derive the continuum version of our described individual-based models. However, due to the complexity of the biological mechanisms included, we first consider a simpler biological situation. We develop an individual-based model describing the spatial dynamics of multicellular systems whereby cells undergo pressure-driven movement and pressure-dependent proliferation. From this, we formally derive nonlinear partial differential equations that are commonly used to model the spatial dynamics of growing cell populations. Through systematic comparison of both models, we demonstrate that the results of computational simulations of the individual-based model faithfully mirror the qualitative and quantitative properties of the solutions to the corresponding partial differential equations. This method could be adapted to more complex individual-based models, such as those we describe in this work.
2019-12-03T00:00:00ZMacfarlane, Fiona RuthThe ability of the human immune system to detect and remove cancer cells is exploited in the development of immunotherapy techniques. However, further understanding of these mechanisms is required and can be achieved through the use of mathematical models. In this thesis, we develop a simple individual-based model of cell movement and illustrate the ability of our model to qualitatively reproduce the migration patterns of immune cells that have been observed in single cell tracking experiments. We then extend the model to describe the spatio-temporal interactions between dendritic cells, cytotoxic T cells and a solid tumour. Through further extension of the model, we explicitly consider the immune recognition of evolving tumour antigens. Computational simulations of our models further clarify the conditions for the onset of a successful immune action against cancer cells and may suggest possible targets to improve the efficacy of immunotherapy. Mathematically, individual-based models can be limited in their amenability to different analysis techniques which are better suited to continuum models. To overcome this, we aim to derive the continuum version of our described individual-based models. However, due to the complexity of the biological mechanisms included, we first consider a simpler biological situation. We develop an individual-based model describing the spatial dynamics of multicellular systems whereby cells undergo pressure-driven movement and pressure-dependent proliferation. From this, we formally derive nonlinear partial differential equations that are commonly used to model the spatial dynamics of growing cell populations. Through systematic comparison of both models, we demonstrate that the results of computational simulations of the individual-based model faithfully mirror the qualitative and quantitative properties of the solutions to the corresponding partial differential equations. This method could be adapted to more complex individual-based models, such as those we describe in this work.On the emergence and evolution of jets and vortices in turbulent planetary atmospheresJougla, Thibaulthttps://hdl.handle.net/10023/179242021-03-03T10:05:21Z2019-06-25T00:00:00ZThis thesis investigates the formation and evolution of jets and vortices in turbulent planetary atmospheres using a dual approach of high-resolution numerical simulations and
novel laboratory experiments. A two-layer quasi-geostrophic beta-channel shallow water
model is used for the numerical study. As in Panetta (1988), a vertical shear is implemented
to represent a spatially-mean latitudinal temperature gradient, which is partially
maintained by thermal relaxation. Baroclinic instabilities work to erode the temperature
gradient, while thermal relaxation acts to restore it. As the basic state vertical shear is
unstable, the thermal relaxation cannot lead to a full recovery, thus modifying subsequent
instabilities and leading to rich nonlinear dynamical behaviour.
First, we consider flow over a flat bottom, and model convective motions like those
thought to occur on Jupiter by pairs of cyclones/anti-cyclones or ‘hetons’ as in Thomson
(2016). We thereby obtain predominantly baroclinic jets, oscillating between quiescent
phases, when jets are zonal and the energy is nearly stationary, and turbulent phases,
when the flow loses its zonality, vortices pinch off from the meandering jets, and zonal
energy components drop while eddy energy components increase. These turbulent phases
typically last for a thermal relaxation period. The impacts of vertical shear
(baroclinicity), thermal relaxation and heton forcing are comprehensively investigated
by considering the energy transfers occurring between kinetic and potential energy, their
barotropic and baroclinic parts as well as their zonal and eddy parts. This leads to a
rethinking of the classic paradigm of energy transfer presented by Salmon (1982), as this
paradigm is too simplistic to explain the results found.
Then, we consider the effect of large-scale bottom topography, as a first approach to
understanding the role of topography in jet and vortex formation. We use the same model
as in the first study but include a linearly sloping topography which has the advantage
of being characterised by a single parameter, the slope. We omit the heton forcing and
instead perturb the flow with a small amplitude Rossby wave initially. The main effect
of heton forcing is actually to act as a kind of damping: energy fluctuations are consistently
less extreme than when no forcing is used. A linear stability analysis is carried
out to motivate a series of nonlinear simulations investigating the effect of topography,
in particular, differences from the flat bottom case previously examined. We find that
destabilising topography makes the jets more dynamic.
In the experimental part, a two-layer salt-stratified fluid is used in a rotating tank with a differentially rotating lid to generate the shear across the interface. We consider
a baroclinically unstable front in the regime of amplitude vacillation, which is found to
be characterised by the sequential emergence and disappearance of a large-scale vortex.
Analysing two similar experiments at the limit of geostrophy, with different Rossby numbers
Ro=0.4 and Ro=0.6, shows surprisingly different behaviours, with a baroclinic dipole
for small, and a barotropic vortex for the large Rossby number. The small-scale wave activity is explored using different methods, and the results suggest small, spontaneously arising inertia-gravity waves preceding the emergence of the vortex which stirs the interface, thus having an impact on the mixing between the two layers. The recovery period of the amplitude vacillation, as well as the intensity of the vortex, increases with the Rossby
number.
For further research on fronts at two-layer immiscible interfaces, a very accurate novel
optical method has been developed to detect the height and slope, based on the refractive
laws of optics. The associated theoretical equations are solved numerically and validated
in various idealised situations.
2019-06-25T00:00:00ZJougla, ThibaultThis thesis investigates the formation and evolution of jets and vortices in turbulent planetary atmospheres using a dual approach of high-resolution numerical simulations and
novel laboratory experiments. A two-layer quasi-geostrophic beta-channel shallow water
model is used for the numerical study. As in Panetta (1988), a vertical shear is implemented
to represent a spatially-mean latitudinal temperature gradient, which is partially
maintained by thermal relaxation. Baroclinic instabilities work to erode the temperature
gradient, while thermal relaxation acts to restore it. As the basic state vertical shear is
unstable, the thermal relaxation cannot lead to a full recovery, thus modifying subsequent
instabilities and leading to rich nonlinear dynamical behaviour.
First, we consider flow over a flat bottom, and model convective motions like those
thought to occur on Jupiter by pairs of cyclones/anti-cyclones or ‘hetons’ as in Thomson
(2016). We thereby obtain predominantly baroclinic jets, oscillating between quiescent
phases, when jets are zonal and the energy is nearly stationary, and turbulent phases,
when the flow loses its zonality, vortices pinch off from the meandering jets, and zonal
energy components drop while eddy energy components increase. These turbulent phases
typically last for a thermal relaxation period. The impacts of vertical shear
(baroclinicity), thermal relaxation and heton forcing are comprehensively investigated
by considering the energy transfers occurring between kinetic and potential energy, their
barotropic and baroclinic parts as well as their zonal and eddy parts. This leads to a
rethinking of the classic paradigm of energy transfer presented by Salmon (1982), as this
paradigm is too simplistic to explain the results found.
Then, we consider the effect of large-scale bottom topography, as a first approach to
understanding the role of topography in jet and vortex formation. We use the same model
as in the first study but include a linearly sloping topography which has the advantage
of being characterised by a single parameter, the slope. We omit the heton forcing and
instead perturb the flow with a small amplitude Rossby wave initially. The main effect
of heton forcing is actually to act as a kind of damping: energy fluctuations are consistently
less extreme than when no forcing is used. A linear stability analysis is carried
out to motivate a series of nonlinear simulations investigating the effect of topography,
in particular, differences from the flat bottom case previously examined. We find that
destabilising topography makes the jets more dynamic.
In the experimental part, a two-layer salt-stratified fluid is used in a rotating tank with a differentially rotating lid to generate the shear across the interface. We consider
a baroclinically unstable front in the regime of amplitude vacillation, which is found to
be characterised by the sequential emergence and disappearance of a large-scale vortex.
Analysing two similar experiments at the limit of geostrophy, with different Rossby numbers
Ro=0.4 and Ro=0.6, shows surprisingly different behaviours, with a baroclinic dipole
for small, and a barotropic vortex for the large Rossby number. The small-scale wave activity is explored using different methods, and the results suggest small, spontaneously arising inertia-gravity waves preceding the emergence of the vortex which stirs the interface, thus having an impact on the mixing between the two layers. The recovery period of the amplitude vacillation, as well as the intensity of the vortex, increases with the Rossby
number.
For further research on fronts at two-layer immiscible interfaces, a very accurate novel
optical method has been developed to detect the height and slope, based on the refractive
laws of optics. The associated theoretical equations are solved numerically and validated
in various idealised situations.Three dimensional MHD simulations of the dynamics and energetics of coronal flux tubesHowson, Thomas Alexanderhttps://hdl.handle.net/10023/175122021-03-03T09:54:03Z2019-06-25T00:00:00ZIn this thesis we present the results of three-dimensional MHD simulations of the evolution of magnetic flux tubes within the solar atmosphere. We consider the dynamics and energetics of coronal loops that are perturbed from an equilibrium state by wave motions or driven continuously by an imposed velocity field. In each case, we investigate the dissipation of magnetic and kinetic energy and evaluate the implications for the heating of coronal plasma.
We present models of transversely oscillating flux tubes which experience rapid damping as kink mode energy is transferred into azimuthal Alfven modes. This mode conversion is typically associated with a density enhancement within the flux tube, however, we demonstrate that it can also proceed with an increased internal magnetic field strength. In either regime, the azimuthal wave modes are subject to dissipation through phase mixing and may promote the development of the magnetic Kelvin-Helmholtz instability. This is associated with the generation of further small scales in the magnetic and velocity fields and, in a non-ideal regime, will enhance the rate of wave dissipation. We show that the growth rate of the instability is sensitive to the implemented transport coefficients and the presence of helical magnetic field.
Additionally, we consider the effects of thermal conduction and optically thin radiation on the evolution of a flux tube tectonics model. We present the results of simulations in which two magnetic flux tubes are twisted around each other by the action of rotational drivers imposed at the loop foot points. Large currents develop at the interface of the flux tubes and magnetic reconnection is triggered as the braiding progresses. The inclusion of conduction and optically thin radiation reduces the high temperatures and gas pressures observed in the centre of the numerical domain. As a result, these processes modify the reconnection outflows, distribution of plasma and the evolution of the magnetic field.
2019-06-25T00:00:00ZHowson, Thomas AlexanderIn this thesis we present the results of three-dimensional MHD simulations of the evolution of magnetic flux tubes within the solar atmosphere. We consider the dynamics and energetics of coronal loops that are perturbed from an equilibrium state by wave motions or driven continuously by an imposed velocity field. In each case, we investigate the dissipation of magnetic and kinetic energy and evaluate the implications for the heating of coronal plasma.
We present models of transversely oscillating flux tubes which experience rapid damping as kink mode energy is transferred into azimuthal Alfven modes. This mode conversion is typically associated with a density enhancement within the flux tube, however, we demonstrate that it can also proceed with an increased internal magnetic field strength. In either regime, the azimuthal wave modes are subject to dissipation through phase mixing and may promote the development of the magnetic Kelvin-Helmholtz instability. This is associated with the generation of further small scales in the magnetic and velocity fields and, in a non-ideal regime, will enhance the rate of wave dissipation. We show that the growth rate of the instability is sensitive to the implemented transport coefficients and the presence of helical magnetic field.
Additionally, we consider the effects of thermal conduction and optically thin radiation on the evolution of a flux tube tectonics model. We present the results of simulations in which two magnetic flux tubes are twisted around each other by the action of rotational drivers imposed at the loop foot points. Large currents develop at the interface of the flux tubes and magnetic reconnection is triggered as the braiding progresses. The inclusion of conduction and optically thin radiation reduces the high temperatures and gas pressures observed in the centre of the numerical domain. As a result, these processes modify the reconnection outflows, distribution of plasma and the evolution of the magnetic field.Numerical modelling of ultra low frequency waves in Earth's magnetosphereElsden, Tomhttps://hdl.handle.net/10023/156632019-04-01T08:33:41Z2016-06-24T00:00:00ZUltra Low Frequency (ULF) waves are a ubiquitous feature of Earth's outer atmosphere, known as the magnetosphere, having been observed on the ground for almost two centuries, and in space over the last 50 years. These waves represent small oscillations in Earth's magnetic field, most often as a response to the external influence of the solar wind. They are important for the transfer of energy throughout the magnetosphere and for coupling different regions together. In this thesis, various features of these oscillations are considered. A detailed background on the history and previous study of ULF waves relevant to our work is given in the introductory chapter. In the following chapters, we predominantly use numerical methods to model ULF waves, which are carefully developed and thoroughly tested. We consider the application of these methods to reports on ground and spaced based observations, which allows a more in depth study of the data. In one case, the simulation results provide evidence for an alternative explanation of the data to the original report, which displays the power of theoretical modelling. An analytical model is also constructed, which is tested on simulation data, to identify the incidence and reflection of a class of ULF wave in the flank magnetosphere. This technique is developed with the aim of future applications to satellite data. Further to this, we develop models both in Cartesian and dipole geometries to investigate some of the theoretical aspects of the coupling between various waves modes. New light is shed on the coupling of compressional (fast) and transverse (Alfvén) magnetohydrodynamic (MHD) wave modes in a 3D dipole geometry. Overall, this thesis aims to develop useful numerical models, which can be used to aid in the interpretation of ULF wave observations, as well as probing new aspects of the existing wave theory.
2016-06-24T00:00:00ZElsden, TomUltra Low Frequency (ULF) waves are a ubiquitous feature of Earth's outer atmosphere, known as the magnetosphere, having been observed on the ground for almost two centuries, and in space over the last 50 years. These waves represent small oscillations in Earth's magnetic field, most often as a response to the external influence of the solar wind. They are important for the transfer of energy throughout the magnetosphere and for coupling different regions together. In this thesis, various features of these oscillations are considered. A detailed background on the history and previous study of ULF waves relevant to our work is given in the introductory chapter. In the following chapters, we predominantly use numerical methods to model ULF waves, which are carefully developed and thoroughly tested. We consider the application of these methods to reports on ground and spaced based observations, which allows a more in depth study of the data. In one case, the simulation results provide evidence for an alternative explanation of the data to the original report, which displays the power of theoretical modelling. An analytical model is also constructed, which is tested on simulation data, to identify the incidence and reflection of a class of ULF wave in the flank magnetosphere. This technique is developed with the aim of future applications to satellite data. Further to this, we develop models both in Cartesian and dipole geometries to investigate some of the theoretical aspects of the coupling between various waves modes. New light is shed on the coupling of compressional (fast) and transverse (Alfvén) magnetohydrodynamic (MHD) wave modes in a 3D dipole geometry. Overall, this thesis aims to develop useful numerical models, which can be used to aid in the interpretation of ULF wave observations, as well as probing new aspects of the existing wave theory.Eruptions and jets in the SunLee, Eon Juihttps://hdl.handle.net/10023/156482019-04-01T08:33:47Z2017-06-23T00:00:00ZMagnetic flux emergence is a fundamental process in the Sun, during which magnetic fields emerge from the solar interior to the surface, to build up active regions and give onset to spectacular dynamic phenomena, such as eruptions and jets. In this thesis, we performed 3D, resistive MHD simulations to study the emergence and the associated magnetic activity of a quadrupolar region in the Sun. Our aim behind the setup of this initial condition (i.e. a quadrupolar region) was to study a magnetic field configuration, which has not been studied in detail before, although it has been repeatedly observed in the Sun and it has been shown that it can host intense magnetic activity (e.g. in the form of jets, flares and eruptions).
The results of our experiments showed that the internal dynamics of such regions leads to the onset of eruptions in the form of twisted magnetic flux tubes (flux ropes). These eruptions are recurrent but they cannot escape the outermost field of the emerging flux (envelope field). They remain confined within the envelope field, as the downward tension of the outermost field lines overwhelms the upward Lorentz force of the erupting field. When we add an ambient magnetic field in the solar atmosphere, external reconnection between the emerging and the ambient field triggers the emission of (standard) reconnection jets. The external reconnection also releases the tension of the ambient field lines and, thus, the eruptions move in an ejective way towards the outer space. Namely, the confined eruptions become ejective eruptions, which escape from the numerical domain. These ejective eruptions drive a newly observed class of jets, the so called "blowout" jets. Our experiments reproduce some of the main observed characteristics of the "blowout" jets. We showed that "blowout" jets emit hot and cool plasma into the outer solar atmosphere simultaneously, and they undergo untwisting motion due to the relaxation of twist during their ejection. We found that the untwisting motion of the "blowout" jets is associated with the propagation of torsional Alfvén waves. Finally, we performed a parametric study to explore the effect of the ambient field strength on the onset and dynamics of the eruptive events. We found that one of the main effects is that the stronger ambient field suppresses the vertical expansion of the magnetic envelope of the quadrupolar region due to the higher magnetic pressure above it. This result has an effect on the emission of jets, which are emitted due to reconnection between the two fields. When the ambient field is relatively weak, it is pushed away from the strong emerging field and reconnection between them is not so persistent. On the other hand, when the ambient field is relatively strong, we find that more jets are ejected due to more efficient and more frequent reconnection between the two flux systems. As a consequence, we find that more mass and flux is being transferred into the solar corona by the reconnection jets. Also, we find that there are more eruptions when the ambient field is stronger. The study of the total energy flux carried by the jets showed that it is sufficient to provide the energy required to accelerate the high speed solar wind. This indicates that the "blowout" jets may play an important role in driving the solar wind.
2017-06-23T00:00:00ZLee, Eon JuiMagnetic flux emergence is a fundamental process in the Sun, during which magnetic fields emerge from the solar interior to the surface, to build up active regions and give onset to spectacular dynamic phenomena, such as eruptions and jets. In this thesis, we performed 3D, resistive MHD simulations to study the emergence and the associated magnetic activity of a quadrupolar region in the Sun. Our aim behind the setup of this initial condition (i.e. a quadrupolar region) was to study a magnetic field configuration, which has not been studied in detail before, although it has been repeatedly observed in the Sun and it has been shown that it can host intense magnetic activity (e.g. in the form of jets, flares and eruptions).
The results of our experiments showed that the internal dynamics of such regions leads to the onset of eruptions in the form of twisted magnetic flux tubes (flux ropes). These eruptions are recurrent but they cannot escape the outermost field of the emerging flux (envelope field). They remain confined within the envelope field, as the downward tension of the outermost field lines overwhelms the upward Lorentz force of the erupting field. When we add an ambient magnetic field in the solar atmosphere, external reconnection between the emerging and the ambient field triggers the emission of (standard) reconnection jets. The external reconnection also releases the tension of the ambient field lines and, thus, the eruptions move in an ejective way towards the outer space. Namely, the confined eruptions become ejective eruptions, which escape from the numerical domain. These ejective eruptions drive a newly observed class of jets, the so called "blowout" jets. Our experiments reproduce some of the main observed characteristics of the "blowout" jets. We showed that "blowout" jets emit hot and cool plasma into the outer solar atmosphere simultaneously, and they undergo untwisting motion due to the relaxation of twist during their ejection. We found that the untwisting motion of the "blowout" jets is associated with the propagation of torsional Alfvén waves. Finally, we performed a parametric study to explore the effect of the ambient field strength on the onset and dynamics of the eruptive events. We found that one of the main effects is that the stronger ambient field suppresses the vertical expansion of the magnetic envelope of the quadrupolar region due to the higher magnetic pressure above it. This result has an effect on the emission of jets, which are emitted due to reconnection between the two fields. When the ambient field is relatively weak, it is pushed away from the strong emerging field and reconnection between them is not so persistent. On the other hand, when the ambient field is relatively strong, we find that more jets are ejected due to more efficient and more frequent reconnection between the two flux systems. As a consequence, we find that more mass and flux is being transferred into the solar corona by the reconnection jets. Also, we find that there are more eruptions when the ambient field is stronger. The study of the total energy flux carried by the jets showed that it is sufficient to provide the energy required to accelerate the high speed solar wind. This indicates that the "blowout" jets may play an important role in driving the solar wind.The dynamic topology of the solar corona : mapping the Sun’s three dimensional magnetic skeletonWilliams, Benjamin Matthewhttps://hdl.handle.net/10023/146372019-04-01T08:33:40Z2018-06-26T00:00:00ZObservations of the surface of the Sun reveal multi-scaled, mixed magnetic features
that carpet the entire solar surface. Not surprisingly, the global magnetic fields
extrapolated from these observations are highly complex. This thesis explores the
topology of the Sun’s global coronal magnetic fields. The magnetic skeleton of a
magnetic field provides us with a way of examining the magnetic field and
quantifying its complexity.
Using specialised codes to find the magnetic skeletons which were written during the
course of this work, we first examine potential field extrapolations of the global solar
coronal magnetic field determined from observed synoptic magnetograms from the
Heliospheric Magnetic Imager on the Solar Dynamics Observatory. The resolution of
the PFSS models is found to be very important for discovering the true nature of the
global magnetic skeleton. By increasing the maximum number of harmonics used in
the potential field extrapolations and, therefore, the grid resolution, 60 times more
null points may be found in the coronal magnetic field. These high resolution fields
also have a large global separator network which connects the coronal magnetic field
over large distances and involves between 40 % and 60 % of all the null points in the
solar atmosphere. This global separator network exists at both solar minimum and
solar maximum and has separators that reach high into the solar atmosphere
(> 1R☉) even though they connect null points close to the solar surface.
These potential field extrapolations are then compared with magnetohydrostatic
(MHS) extrapolations of the coronal magnetic field which also provide us with
information about the plasma in the corona. With a small component of electric
current density in the direction perpendicular to the radial direction, these MHS fields
are found to have a plasma beta and pressure typical of the corona. As this small
component of electric current density grows, the heliospheric current sheet is warped
significantly and the magnetic field, plasma beta and pressure become unphysical.
Torsional spine reconnection is also studied local to a single null point. First using a
dynamical relaxation of a spiral null point under non-resistive magnetohydrodynamics
(MHD) to a MHS equilibrium is form in which a current layer has built up around
the spine lines. Then the reconnection under resistive MHD in this current sheet is
studied. The current about the spine lines is dissipated and the magnetic energy is
mainly converted into heat directly as the field lines untwist about the spine line.
2018-06-26T00:00:00ZWilliams, Benjamin MatthewObservations of the surface of the Sun reveal multi-scaled, mixed magnetic features
that carpet the entire solar surface. Not surprisingly, the global magnetic fields
extrapolated from these observations are highly complex. This thesis explores the
topology of the Sun’s global coronal magnetic fields. The magnetic skeleton of a
magnetic field provides us with a way of examining the magnetic field and
quantifying its complexity.
Using specialised codes to find the magnetic skeletons which were written during the
course of this work, we first examine potential field extrapolations of the global solar
coronal magnetic field determined from observed synoptic magnetograms from the
Heliospheric Magnetic Imager on the Solar Dynamics Observatory. The resolution of
the PFSS models is found to be very important for discovering the true nature of the
global magnetic skeleton. By increasing the maximum number of harmonics used in
the potential field extrapolations and, therefore, the grid resolution, 60 times more
null points may be found in the coronal magnetic field. These high resolution fields
also have a large global separator network which connects the coronal magnetic field
over large distances and involves between 40 % and 60 % of all the null points in the
solar atmosphere. This global separator network exists at both solar minimum and
solar maximum and has separators that reach high into the solar atmosphere
(> 1R☉) even though they connect null points close to the solar surface.
These potential field extrapolations are then compared with magnetohydrostatic
(MHS) extrapolations of the coronal magnetic field which also provide us with
information about the plasma in the corona. With a small component of electric
current density in the direction perpendicular to the radial direction, these MHS fields
are found to have a plasma beta and pressure typical of the corona. As this small
component of electric current density grows, the heliospheric current sheet is warped
significantly and the magnetic field, plasma beta and pressure become unphysical.
Torsional spine reconnection is also studied local to a single null point. First using a
dynamical relaxation of a spiral null point under non-resistive magnetohydrodynamics
(MHD) to a MHS equilibrium is form in which a current layer has built up around
the spine lines. Then the reconnection under resistive MHD in this current sheet is
studied. The current about the spine lines is dissipated and the magnetic energy is
mainly converted into heat directly as the field lines untwist about the spine line.Modelling chromospheric evaporation in response to coronal heatingJohnston, Craig Davidhttps://hdl.handle.net/10023/146302020-01-29T03:02:22Z2018-06-26T00:00:00ZThis thesis presents a new computationally efficient method for modelling the response of the solar corona to the release of energy. During impulsive heating events, the coronal temperature increases which leads to a downward heat flux into the transition region (TR). The plasma is unable to radiate this excess conductive heating and so the gas pressure increases locally. The resulting pressure gradient drives an upflow of dense material, creating an increase in the coronal density. This density increase is often called chromospheric evaporation. A process which is highly sensitive to the TR resolution in numerical simulations. If the resolution is not adequate, then the downward heat flux jumps over the TR and deposits the heat in the chromosphere, where it is radiated away. The outcome is that with an under-resolved TR, major errors occur in simulating the coronal density evolution. We address this problem by treating the lower transition region as a discontinuity that responds to changing coronal conditions through the imposition of a jump condition that is derived from an integrated form of energy conservation. In this thesis, it is shown that this method permits fast and accurate numerical solutions in both one-dimensional and multi-dimensional simulations. By modelling the TR with this appropriate jump condition, we remove the influence of poor numerical resolution and obtain the correct evaporative response to coronal heating, even when using resolutions that are compatible with multi-dimensional magnetohydrodynamic simulations.
2018-06-26T00:00:00ZJohnston, Craig DavidThis thesis presents a new computationally efficient method for modelling the response of the solar corona to the release of energy. During impulsive heating events, the coronal temperature increases which leads to a downward heat flux into the transition region (TR). The plasma is unable to radiate this excess conductive heating and so the gas pressure increases locally. The resulting pressure gradient drives an upflow of dense material, creating an increase in the coronal density. This density increase is often called chromospheric evaporation. A process which is highly sensitive to the TR resolution in numerical simulations. If the resolution is not adequate, then the downward heat flux jumps over the TR and deposits the heat in the chromosphere, where it is radiated away. The outcome is that with an under-resolved TR, major errors occur in simulating the coronal density evolution. We address this problem by treating the lower transition region as a discontinuity that responds to changing coronal conditions through the imposition of a jump condition that is derived from an integrated form of energy conservation. In this thesis, it is shown that this method permits fast and accurate numerical solutions in both one-dimensional and multi-dimensional simulations. By modelling the TR with this appropriate jump condition, we remove the influence of poor numerical resolution and obtain the correct evaporative response to coronal heating, even when using resolutions that are compatible with multi-dimensional magnetohydrodynamic simulations.The effects of the Kelvin-Helmholtz instability of the magnetosphereMills, Katharine J.https://hdl.handle.net/10023/139902020-02-24T10:11:50Z1999-01-01T00:00:00ZIn this thesis, the behaviour of Kelvin-Helmholtz unstable modes on the magnetospheric flanks and in the magnetotail are investigated. A model of a straight bounded magnetosphere connected to a semi-infinite field-free magnetosheath which is flowing with a uniform speed is used. First the magnetosphere is taken to be uniform with the magnetic field perpendicular to the flow in the magnetosheath and it is shown that the increase in Pc5 wave power observed for high solar wind flow speeds correlates well with the onset of instability of the fast body modes. A condition for the exact onset of instability of these modes is derived and the behaviour of fast surface and slow body and surface modes is also investigated. Using a non-uniform magnetosphere, it is shown that these unstable body modes may couple to field line resonances. The fastest growing modes are found to have a common azimuthal phase speed which depends only on the local conditions at the magnetopause and may be predicted using the theory of over-reflection. A finite width boundary layer is then added to the uniform magnetosphere model to investigate the space-time evolution of wave-packets on the magnetopause. Fast surface mode wave-packets are found to grow rapidly as they convect around the flanks so that non-linear effects will be important. Fast cavity mode wave-packets will remain relatively small on the flanks, explaining the robustness of the body of the magnetosphere here. Slow modes are found to grow very little in this region. Finally, a uniform magnetosphere with the magnetic field parallel to the flow in the magnetosheath is considered. Here, the fast modes are unlikely to be Kelvin-Helmholtz unstable for realistic flow speeds, and the magnetopause boundary may be reasonably assumed to be perfectly reflecting. The low value of the plasma pressure is this region suggests that slow modes will be unimportant.
1999-01-01T00:00:00ZMills, Katharine J.In this thesis, the behaviour of Kelvin-Helmholtz unstable modes on the magnetospheric flanks and in the magnetotail are investigated. A model of a straight bounded magnetosphere connected to a semi-infinite field-free magnetosheath which is flowing with a uniform speed is used. First the magnetosphere is taken to be uniform with the magnetic field perpendicular to the flow in the magnetosheath and it is shown that the increase in Pc5 wave power observed for high solar wind flow speeds correlates well with the onset of instability of the fast body modes. A condition for the exact onset of instability of these modes is derived and the behaviour of fast surface and slow body and surface modes is also investigated. Using a non-uniform magnetosphere, it is shown that these unstable body modes may couple to field line resonances. The fastest growing modes are found to have a common azimuthal phase speed which depends only on the local conditions at the magnetopause and may be predicted using the theory of over-reflection. A finite width boundary layer is then added to the uniform magnetosphere model to investigate the space-time evolution of wave-packets on the magnetopause. Fast surface mode wave-packets are found to grow rapidly as they convect around the flanks so that non-linear effects will be important. Fast cavity mode wave-packets will remain relatively small on the flanks, explaining the robustness of the body of the magnetosphere here. Slow modes are found to grow very little in this region. Finally, a uniform magnetosphere with the magnetic field parallel to the flow in the magnetosheath is considered. Here, the fast modes are unlikely to be Kelvin-Helmholtz unstable for realistic flow speeds, and the magnetopause boundary may be reasonably assumed to be perfectly reflecting. The low value of the plasma pressure is this region suggests that slow modes will be unimportant.Relaxation methods in compressible flowMitchell, A. R. (Andrew R.)https://hdl.handle.net/10023/122982019-04-01T08:33:32Z1949-01-01T00:00:00Z1949-01-01T00:00:00ZMitchell, A. R. (Andrew R.)New aspects of particle acceleration in collapsing magnetic trapsEradat Oskoui, Solmazhttps://hdl.handle.net/10023/119542019-04-01T08:33:44Z2014-01-01T00:00:00ZCollapsing magnetic traps (CMTs) have been suggested as one of the mechanisms that could contribute to particle energisation in solar flares. The basic idea behind CMTs is that charged particles will be trapped on the magnetic field lines below the reconnection region of a flare. This thesis discusses a number of important new aspects in particle energisation processes in CMTs, based on the model by Giuliani et al. (2005). In particular, we extend previous studies of particle acceleration in this CMT model to the relativistic regime and compare our results obtained using relativistic guiding centre theory with results obtained using the non-relativistic guiding centre theory. The similarities and differences found are discussed. We then present a detailed study of the question, what leads to the trapping or escape of particle orbits from CMTs. The answer to this question is investigated by using results from the non-relativistic orbit calculations with guiding centre theory and a number of simple models for particle energy gain in CMTs. We find that there is a critical pitch angle dividing trapped particle orbits from the escaping particle orbits and that this critical pitch angle does not coincide with the initial loss cone angle. Furthermore, we also present a calculation of the time evolution of an anisotropic pressure tensor and of the plasma density under the assumptions that they evolve in line with our kinematic MHD CMT model and that the pressure tensor satisfies the double-adiabatic Chew-Goldburger-Low (CGL) theory.
Finally, we make a first step to introduce Coulomb scattering by a Maxwellian background plasma into our guiding centre equations by changing them into a set of stochastic differential equations. We study the influence of a static background plasma onto selected particle orbits by pitch angle scattering and energy losses, and look at its effect on the particle energy and the trapping conditions.
2014-01-01T00:00:00ZEradat Oskoui, SolmazCollapsing magnetic traps (CMTs) have been suggested as one of the mechanisms that could contribute to particle energisation in solar flares. The basic idea behind CMTs is that charged particles will be trapped on the magnetic field lines below the reconnection region of a flare. This thesis discusses a number of important new aspects in particle energisation processes in CMTs, based on the model by Giuliani et al. (2005). In particular, we extend previous studies of particle acceleration in this CMT model to the relativistic regime and compare our results obtained using relativistic guiding centre theory with results obtained using the non-relativistic guiding centre theory. The similarities and differences found are discussed. We then present a detailed study of the question, what leads to the trapping or escape of particle orbits from CMTs. The answer to this question is investigated by using results from the non-relativistic orbit calculations with guiding centre theory and a number of simple models for particle energy gain in CMTs. We find that there is a critical pitch angle dividing trapped particle orbits from the escaping particle orbits and that this critical pitch angle does not coincide with the initial loss cone angle. Furthermore, we also present a calculation of the time evolution of an anisotropic pressure tensor and of the plasma density under the assumptions that they evolve in line with our kinematic MHD CMT model and that the pressure tensor satisfies the double-adiabatic Chew-Goldburger-Low (CGL) theory.
Finally, we make a first step to introduce Coulomb scattering by a Maxwellian background plasma into our guiding centre equations by changing them into a set of stochastic differential equations. We study the influence of a static background plasma onto selected particle orbits by pitch angle scattering and energy losses, and look at its effect on the particle energy and the trapping conditions.Theory of one-dimensional Vlasov-Maxwell equilibria: with applications to collisionless current sheets and flux tubesAllanson, Oliver Douglashttps://hdl.handle.net/10023/119162019-04-01T08:33:54Z2017-12-07T00:00:00ZVlasov-Maxwell equilibria are characterised by the self-consistent descriptions of the steady-states of collisionless plasmas in particle phase-space, and balanced macroscopic forces. We study the theory of Vlasov-Maxwell equilibria in one spatial dimension, as well as its application to current sheet and flux tube models.
The ‘inverse problem’ is that of determining a Vlasov-Maxwell equilibrium distribution function self-consistent with a given magnetic field. We develop the theory of inversion using expansions in Hermite polynomial functions of the canonical momenta. Sufficient conditions for the convergence of a Hermite expansion are found, given a pressure tensor. For large classes of DFs, we prove that non-negativity of the distribution function is contingent on the magnetisation
of the plasma, and make conjectures for all classes.
The inverse problem is considered for nonlinear ‘force-free Harris sheets’. By applying the Hermite method, we construct new models that can describe sub-unity values of the plasma beta (βpl) for the first time. Whilst analytical convergence is proven for all βpl, numerical convergence is attained for βpl = 0.85, and then βpl = 0.05 after a ‘re-gauging’ process.
We consider the properties that a pressure tensor must satisfy to be consistent with ‘asymmetric Harris sheets’, and construct new examples. It is possible to analytically solve the inverse problem in some cases, but others must be tackled numerically. We present new exact Vlasov-Maxwell equilibria for asymmetric current sheets, which can be written as a sum of shifted Maxwellian distributions. This is ideal for implementations in particle-in-cell simulations.
We study the correspondence between the microscopic and macroscopic descriptions of equilibrium in cylindrical geometry, and then attempt to find Vlasov-Maxwell equilibria for the nonlinear force-free ‘Gold-Hoyle’ model. However, it is necessary to include a background field, which can be arbitrarily weak if desired. The equilibrium can be electrically non-neutral, depending on the bulk flows.
2017-12-07T00:00:00ZAllanson, Oliver DouglasVlasov-Maxwell equilibria are characterised by the self-consistent descriptions of the steady-states of collisionless plasmas in particle phase-space, and balanced macroscopic forces. We study the theory of Vlasov-Maxwell equilibria in one spatial dimension, as well as its application to current sheet and flux tube models.
The ‘inverse problem’ is that of determining a Vlasov-Maxwell equilibrium distribution function self-consistent with a given magnetic field. We develop the theory of inversion using expansions in Hermite polynomial functions of the canonical momenta. Sufficient conditions for the convergence of a Hermite expansion are found, given a pressure tensor. For large classes of DFs, we prove that non-negativity of the distribution function is contingent on the magnetisation
of the plasma, and make conjectures for all classes.
The inverse problem is considered for nonlinear ‘force-free Harris sheets’. By applying the Hermite method, we construct new models that can describe sub-unity values of the plasma beta (βpl) for the first time. Whilst analytical convergence is proven for all βpl, numerical convergence is attained for βpl = 0.85, and then βpl = 0.05 after a ‘re-gauging’ process.
We consider the properties that a pressure tensor must satisfy to be consistent with ‘asymmetric Harris sheets’, and construct new examples. It is possible to analytically solve the inverse problem in some cases, but others must be tackled numerically. We present new exact Vlasov-Maxwell equilibria for asymmetric current sheets, which can be written as a sum of shifted Maxwellian distributions. This is ideal for implementations in particle-in-cell simulations.
We study the correspondence between the microscopic and macroscopic descriptions of equilibrium in cylindrical geometry, and then attempt to find Vlasov-Maxwell equilibria for the nonlinear force-free ‘Gold-Hoyle’ model. However, it is necessary to include a background field, which can be arbitrarily weak if desired. The equilibrium can be electrically non-neutral, depending on the bulk flows.Wave of chaos in a spatial eco-epidemiological system : generating realistic patterns of patchiness in rabbit-lynx dynamicsUpadhyay, RanjitRoy, ParimitaVenkataraman, C.Madzvamuse, Anotidahttps://hdl.handle.net/10023/116662022-05-05T15:30:29Z2016-11-01T00:00:00ZIn the present paper, we propose and analyse an eco-epidemiological model with diffusion to study the dynamics of rabbit populations which are consumed by lynx populations. Existence, boundedness, stability and bifurcation analyses of solutions for the proposed rabbit-lynx model are performed. Results show that in the presence of diffusion the model has the potential of exhibiting Turing instability. Numerical results (finite difference and finite element methods) reveal the existence of the wave of chaos and this appears to be a dominant mode of disease dispersal. We also show the mechanism of spatiotemporal pattern formation resulting from the Hopf bifurcation analysis, which can be a potential candidate for understanding the complex spatiotemporal dynamics of eco-epidemiological systems. Implications of the asymptotic transmission rate on disease eradication among rabbit population which in turn enhances the survival of Iberian lynx are discussed.
AM and CV would like to acknowledge support from the Engineering and Physical Sciences Research Council grant (EP/J016780/1) and the Leverhulme Trust Research Project Grant (RPG-2014-149).
2016-11-01T00:00:00ZUpadhyay, RanjitRoy, ParimitaVenkataraman, C.Madzvamuse, AnotidaIn the present paper, we propose and analyse an eco-epidemiological model with diffusion to study the dynamics of rabbit populations which are consumed by lynx populations. Existence, boundedness, stability and bifurcation analyses of solutions for the proposed rabbit-lynx model are performed. Results show that in the presence of diffusion the model has the potential of exhibiting Turing instability. Numerical results (finite difference and finite element methods) reveal the existence of the wave of chaos and this appears to be a dominant mode of disease dispersal. We also show the mechanism of spatiotemporal pattern formation resulting from the Hopf bifurcation analysis, which can be a potential candidate for understanding the complex spatiotemporal dynamics of eco-epidemiological systems. Implications of the asymptotic transmission rate on disease eradication among rabbit population which in turn enhances the survival of Iberian lynx are discussed.Spatial variation in boundary conditions can govern selection and location of eyespots in butterfly wingsVenkataraman, ChandrasekharSekimura, Toshiohttps://hdl.handle.net/10023/116182022-05-10T10:30:37Z2017-01-01T00:00:00ZDespite being the subject of widespread study, many aspects of the development of eyespot patterns in butterfly wings remain poorly understood. In this work, we examine, through numerical simulations, a mathematical model for eyespot focus point formation in which a reaction-diffusion system is assumed to play the role of the patterning mechanism. In the model, changes in the boundary conditions at the veins at the proximal boundary alone are capable of determining whether or not an eyespot focus forms in a given wing cell and the eventual position of focus points within the wing cell. Furthermore, an auxiliary surface reaction diffusion system posed along the entire proximal boundary of the wing cells is proposed as the mechanism that generates the necessary changes in the proximal boundary profiles. In order to illustrate the robustness of the model, we perform simulations on a curved wing geometry that is somewhat closer to a biological realistic domain than the rectangular wing cells previously considered, and we also illustrate the ability of the model to reproduce experimental results on artificial selection of eyespots.
2017-01-01T00:00:00ZVenkataraman, ChandrasekharSekimura, ToshioDespite being the subject of widespread study, many aspects of the development of eyespot patterns in butterfly wings remain poorly understood. In this work, we examine, through numerical simulations, a mathematical model for eyespot focus point formation in which a reaction-diffusion system is assumed to play the role of the patterning mechanism. In the model, changes in the boundary conditions at the veins at the proximal boundary alone are capable of determining whether or not an eyespot focus forms in a given wing cell and the eventual position of focus points within the wing cell. Furthermore, an auxiliary surface reaction diffusion system posed along the entire proximal boundary of the wing cells is proposed as the mechanism that generates the necessary changes in the proximal boundary profiles. In order to illustrate the robustness of the model, we perform simulations on a curved wing geometry that is somewhat closer to a biological realistic domain than the rectangular wing cells previously considered, and we also illustrate the ability of the model to reproduce experimental results on artificial selection of eyespots.Erwin Schrödinger and quantum wave mechanicsO'Connor, John J.Robertson, Edmund F.https://hdl.handle.net/10023/115432024-02-26T00:43:09Z2017-08-22T00:00:00ZThe fathers of matrix quantum mechanics believed that the quantum particles are unanschaulich (unvisualizable) and that quantum particles pop into existence only when we measure them. Challenging the orthodoxy, in 1926 Erwin Schrödinger developed his wave equation that describes the quantum particles as a packet of quantum probability amplitudes evolving in space and time. Thus, Schrödinger visualized the unvisualizable and lifted the veil that has been obscuring the wonders of the quantum world.
2017-08-22T00:00:00ZO'Connor, John J.Robertson, Edmund F.The fathers of matrix quantum mechanics believed that the quantum particles are unanschaulich (unvisualizable) and that quantum particles pop into existence only when we measure them. Challenging the orthodoxy, in 1926 Erwin Schrödinger developed his wave equation that describes the quantum particles as a packet of quantum probability amplitudes evolving in space and time. Thus, Schrödinger visualized the unvisualizable and lifted the veil that has been obscuring the wonders of the quantum world.Hα and EUV observations of a partial CMEChristian, Damian J.Jess, David B.Antolin, PatrickMathioudakis, Mihalishttps://hdl.handle.net/10023/102912022-04-05T15:31:36Z2015-05-12T00:00:00ZWe have obtained Hα high spatial and time resolution observations of the upper solar chromosphere and supplemented these with multi-wavelength observations from the Solar Dynamics Observatory (SDO) and the Hinode Extreme-ultraviolet Imaging Spectrometer. The Hα observations were conducted on 2012 February 11 with the Hydrogen-Alpha Rapid Dynamics Camera instrument at the National Solar Observatory's Dunn Solar Telescope. Our Hα observations found large downflows of chromospheric material returning from coronal heights following a failed prominence eruption. We have detected several large condensations ("blobs") returning to the solar surface at velocities of ≈200 km s−1 in both Hα and several SDO Atmospheric Imaging Assembly band passes. The average derived size of these "blobs" in Hα is 500 by 3000 km2 in the directions perpendicular and parallel to the direction of travel, respectively. A comparison of our "blob" widths to those found from coronal rain, indicate that there are additional, smaller, unresolved "blobs" in agreement with previous studies and recent numerical simulations. Our observed velocities and decelerations of the "blobs" in both Hα and SDO bands are less than those expected for gravitational free-fall and imply additional magnetic or gas pressure impeding the flow. We derived a kinetic energy of ≈2 orders of magnitude lower for the main eruption than a typical coronal mass ejection, which may explain its partial nature.
2015-05-12T00:00:00ZChristian, Damian J.Jess, David B.Antolin, PatrickMathioudakis, MihalisWe have obtained Hα high spatial and time resolution observations of the upper solar chromosphere and supplemented these with multi-wavelength observations from the Solar Dynamics Observatory (SDO) and the Hinode Extreme-ultraviolet Imaging Spectrometer. The Hα observations were conducted on 2012 February 11 with the Hydrogen-Alpha Rapid Dynamics Camera instrument at the National Solar Observatory's Dunn Solar Telescope. Our Hα observations found large downflows of chromospheric material returning from coronal heights following a failed prominence eruption. We have detected several large condensations ("blobs") returning to the solar surface at velocities of ≈200 km s−1 in both Hα and several SDO Atmospheric Imaging Assembly band passes. The average derived size of these "blobs" in Hα is 500 by 3000 km2 in the directions perpendicular and parallel to the direction of travel, respectively. A comparison of our "blob" widths to those found from coronal rain, indicate that there are additional, smaller, unresolved "blobs" in agreement with previous studies and recent numerical simulations. Our observed velocities and decelerations of the "blobs" in both Hα and SDO bands are less than those expected for gravitational free-fall and imply additional magnetic or gas pressure impeding the flow. We derived a kinetic energy of ≈2 orders of magnitude lower for the main eruption than a typical coronal mass ejection, which may explain its partial nature.Detection of supersonic downflows and associated heating events in the transition region above sunspotsKleint, L.Antolin, P.Tian, H.Judge, P.Testa, P.De Pontieu, B.Martínez-Sykora, J.Reeves, K. K.Wuelser, J. P.McKillop, S.Saar, S.Carlsson, M.Boerner, P.Hurlburt, N.Lemen, J.Tarbell, T. D.Title, A.Golub, L.Hansteen, V.Jaeggli, S.Kankelborg, C.https://hdl.handle.net/10023/102822022-04-06T15:32:05Z2014-06-27T00:00:00ZInterface Region Imaging Spectrograph data allow us to study the solar transition region (TR) with an unprecedented spatial resolution of 0″33. On 2013 August 30, we observed bursts of high Doppler shifts suggesting strong supersonic downflows of up to 200 km s–1 and weaker, slightly slower upflows in the spectral lines Mg II h and k, C II 1336, Si IV 1394 Å, and 1403 Å, that are correlated with brightenings in the slitjaw images (SJIs). The bursty behavior lasts throughout the 2 hr observation, with average burst durations of about 20 s. The locations of these short-lived events appear to be the umbral and penumbral footpoints of EUV loops. Fast apparent downflows are observed along these loops in the SJIs and in the Atmospheric Imaging Assembly, suggesting that the loops are thermally unstable. We interpret the observations as cool material falling from coronal heights, and especially coronal rain produced along the thermally unstable loops, which leads to an increase of intensity at the loop footpoints, probably indicating an increase of density and temperature in the TR. The rain speeds are on the higher end of previously reported speeds for this phenomenon, and possibly higher than the free-fall velocity along the loops. On other observing days, similar bright dots are sometimes aligned into ribbons, resembling small flare ribbons. These observations provide a first insight into small-scale heating events in sunspots in the TR.
2014-06-27T00:00:00ZKleint, L.Antolin, P.Tian, H.Judge, P.Testa, P.De Pontieu, B.Martínez-Sykora, J.Reeves, K. K.Wuelser, J. P.McKillop, S.Saar, S.Carlsson, M.Boerner, P.Hurlburt, N.Lemen, J.Tarbell, T. D.Title, A.Golub, L.Hansteen, V.Jaeggli, S.Kankelborg, C.Interface Region Imaging Spectrograph data allow us to study the solar transition region (TR) with an unprecedented spatial resolution of 0″33. On 2013 August 30, we observed bursts of high Doppler shifts suggesting strong supersonic downflows of up to 200 km s–1 and weaker, slightly slower upflows in the spectral lines Mg II h and k, C II 1336, Si IV 1394 Å, and 1403 Å, that are correlated with brightenings in the slitjaw images (SJIs). The bursty behavior lasts throughout the 2 hr observation, with average burst durations of about 20 s. The locations of these short-lived events appear to be the umbral and penumbral footpoints of EUV loops. Fast apparent downflows are observed along these loops in the SJIs and in the Atmospheric Imaging Assembly, suggesting that the loops are thermally unstable. We interpret the observations as cool material falling from coronal heights, and especially coronal rain produced along the thermally unstable loops, which leads to an increase of intensity at the loop footpoints, probably indicating an increase of density and temperature in the TR. The rain speeds are on the higher end of previously reported speeds for this phenomenon, and possibly higher than the free-fall velocity along the loops. On other observing days, similar bright dots are sometimes aligned into ribbons, resembling small flare ribbons. These observations provide a first insight into small-scale heating events in sunspots in the TR.Forward modeling of gyrosynchrotron intensity perturbations by sausage modesReznikova, V. E.Antolin, P.Van Doorsselaere, T.https://hdl.handle.net/10023/102802022-04-05T15:31:37Z2014-03-28T00:00:00ZTo determine the observable radio signatures of the fast sausagestanding wave, we examine gyrosynchrotron (GS) emission modulation usinga linear three-dimensional magnetohydrodynamic model of a plasmacylinder. Effects of the line-of-sight angle and instrumental resolutionon perturbations of the GS intensity are analyzed for two models: a basemodel with strong Razin suppression and a low-density model in which theRazin effect was unimportant. Our finding contradicts previouspredictions made with simpler models: an in-phase variation of intensitybetween low (f <fpeak) and high (f > fpeak) frequencies is found for the low-density model and ananti-phase variation for the base model in the case of a viewing angleof 45°. The spatially inhomogeneous character of the oscillatingemission source and the spatial resolution of the model are found tohave a significant effect on the resulting intensity.
2014-03-28T00:00:00ZReznikova, V. E.Antolin, P.Van Doorsselaere, T.To determine the observable radio signatures of the fast sausagestanding wave, we examine gyrosynchrotron (GS) emission modulation usinga linear three-dimensional magnetohydrodynamic model of a plasmacylinder. Effects of the line-of-sight angle and instrumental resolutionon perturbations of the GS intensity are analyzed for two models: a basemodel with strong Razin suppression and a low-density model in which theRazin effect was unimportant. Our finding contradicts previouspredictions made with simpler models: an in-phase variation of intensitybetween low (f <fpeak) and high (f > fpeak) frequencies is found for the low-density model and ananti-phase variation for the base model in the case of a viewing angleof 45°. The spatially inhomogeneous character of the oscillatingemission source and the spatial resolution of the model are found tohave a significant effect on the resulting intensity.Numerical simulations of sunspot rotation driven by magnetic flux emergenceSturrock, Zoehttps://hdl.handle.net/10023/101292019-04-01T08:33:25Z2017-06-23T00:00:00ZMagnetic flux continually emerges from the Sun, rising through the solar interior, emerging at the photosphere in the form of sunspots and expanding into the atmosphere. Observations of sunspot rotations have been reported for over a century and are often accompanied by solar eruptions and flaring activity. In this thesis, we present 3D numerical simulations of the emergence of twisted flux tubes from the uppermost layers of the solar interior, examining the rotational movements of sunspots in the photospheric plane. The basic experiment introduces the mechanism and characteristics of sunspot rotation by a clear calculation of rotation angle, vorticity, magnetic helicity and energy, whereby we find an untwisting of the interior portion of the field, accompanied by an injection of twist into the atmospheric field. We extend this model by altering the initial field strength and twist of the sub-photospheric tube. This comparison reveals the rotation angle, helicity and current show a direct dependence on field strength. An increase in field strength increases the rotation angle, the length of fieldlines extending into the atmosphere, and the magnetic energy transported to the atmosphere. The fieldline length is crucial as we predict the twist per unit length
equilibrates to a lower value on longer fieldlines, and hence possesses a larger rotation angle. No such direct dependence is found when varying the twist but there is a clear ordering in rotation angle, helicity, and energy, with more highly twisted tubes undergoing larger rotation angles. We believe the final angle of rotation is reached when the system achieves a constant degree of twist along the length of fieldlines. By extrapolating the size of the modelled active region, we find rotation angles and rates comparable with those observed. In addition, we explore sunspot rotation caused by sub-photospheric velocities twisting the
footpoints of flux tubes.
2017-06-23T00:00:00ZSturrock, ZoeMagnetic flux continually emerges from the Sun, rising through the solar interior, emerging at the photosphere in the form of sunspots and expanding into the atmosphere. Observations of sunspot rotations have been reported for over a century and are often accompanied by solar eruptions and flaring activity. In this thesis, we present 3D numerical simulations of the emergence of twisted flux tubes from the uppermost layers of the solar interior, examining the rotational movements of sunspots in the photospheric plane. The basic experiment introduces the mechanism and characteristics of sunspot rotation by a clear calculation of rotation angle, vorticity, magnetic helicity and energy, whereby we find an untwisting of the interior portion of the field, accompanied by an injection of twist into the atmospheric field. We extend this model by altering the initial field strength and twist of the sub-photospheric tube. This comparison reveals the rotation angle, helicity and current show a direct dependence on field strength. An increase in field strength increases the rotation angle, the length of fieldlines extending into the atmosphere, and the magnetic energy transported to the atmosphere. The fieldline length is crucial as we predict the twist per unit length
equilibrates to a lower value on longer fieldlines, and hence possesses a larger rotation angle. No such direct dependence is found when varying the twist but there is a clear ordering in rotation angle, helicity, and energy, with more highly twisted tubes undergoing larger rotation angles. We believe the final angle of rotation is reached when the system achieves a constant degree of twist along the length of fieldlines. By extrapolating the size of the modelled active region, we find rotation angles and rates comparable with those observed. In addition, we explore sunspot rotation caused by sub-photospheric velocities twisting the
footpoints of flux tubes.On the theory of symmetric MHD equilibria with anisotropic pressureHodgson, Jonathan David Brockiehttps://hdl.handle.net/10023/99082019-04-01T08:33:22Z2016-01-01T00:00:00ZIn this thesis we discuss the theory of symmetric MHD equilibria with anisotropic pressure. More
specifically, we focus on gyrotropic pressures, where the pressure tensor can be split into components along
and across the magnetic field. We first explore 2D solutions, which can be found using total field type
formalisms. These formalisms rely on treating quantities as functions of both the magnetic flux function
and the magnetic field strength, and reduce the equilibrium equations to a single Grad-Shafranov equation
that can be solved to find the magnetic flux function. However, these formalisms are not appropriate
when one includes a shear field component of magnetic flux, since they lead to a set of equations which
are implicitly coupled. Therefore, in order to solve the equilibrium problem with a magnetic shear field
component, we introduce the poloidal formalism. This new formalism considers quantities as functions
of the poloidal magnetic field strength (instead of the total magnetic field strength), and yields a set
of two equations which are not coupled, and can be solved to find the magnetic flux function and the
shear field. There are some situations where the poloidal formalism is difficult to use, however, such as
in rotationally symmetric systems. Thus we require a further formalism, which we call the combined
approach, which allows a more general use of the poloidal formalism. One finds that the combined
formalism leads to multi-valued functions, which must be dealt with appropriately. Finally, we present
some numerical examples of MHD equilibria, which have been found using each of the three formalisms
mentioned above.
2016-01-01T00:00:00ZHodgson, Jonathan David BrockieIn this thesis we discuss the theory of symmetric MHD equilibria with anisotropic pressure. More
specifically, we focus on gyrotropic pressures, where the pressure tensor can be split into components along
and across the magnetic field. We first explore 2D solutions, which can be found using total field type
formalisms. These formalisms rely on treating quantities as functions of both the magnetic flux function
and the magnetic field strength, and reduce the equilibrium equations to a single Grad-Shafranov equation
that can be solved to find the magnetic flux function. However, these formalisms are not appropriate
when one includes a shear field component of magnetic flux, since they lead to a set of equations which
are implicitly coupled. Therefore, in order to solve the equilibrium problem with a magnetic shear field
component, we introduce the poloidal formalism. This new formalism considers quantities as functions
of the poloidal magnetic field strength (instead of the total magnetic field strength), and yields a set
of two equations which are not coupled, and can be solved to find the magnetic flux function and the
shear field. There are some situations where the poloidal formalism is difficult to use, however, such as
in rotationally symmetric systems. Thus we require a further formalism, which we call the combined
approach, which allows a more general use of the poloidal formalism. One finds that the combined
formalism leads to multi-valued functions, which must be dealt with appropriately. Finally, we present
some numerical examples of MHD equilibria, which have been found using each of the three formalisms
mentioned above.The usage of a three-compartment model to investigate the metabolic differences between hepatic reductase null and wild-type miceHill, LydiaChaplain, Mark Andrew JosephWolf, RolandKapelyukh, Yuryhttps://hdl.handle.net/10023/96112022-04-22T15:30:20Z2015-10-05T00:00:00ZThe Cytochrome P450 (CYP) system is involved in 90% of the human body’s interactions with xenobiotics and due to this, it has become an area of avid research including the creation of transgenic mice. This paper proposes a three-compartment model which is used to explain the drug metabolism in the Hepatic Reductase Null (HRN) mouse developed by the University of Dundee (Henderson, C. J., Otto, D. M. E., Carrie, D., Magnuson, M. A., McLaren, A. W., Rosewell, I. and Wolf, C. R. (2003) Inactivation of the hepatic cytochrome p450 system by conditional deletion of hepatic cytochrome p450 reductase. J. Biol. Chem. 278, 13480–13486). The model is compared with a two-compartment model using experimental data from studies using wild-type and HRN mice. This comparison allowed for metabolic differences between the two types of mice to be isolated. The three sets of drug data (Gefitinib, Midazolam and Thalidomide) showed that the transgenic mouse has a decreased rate of metabolism.
L.H. is currently funded by the Research Foundation Flanders (FWO) and the Belgian Science Policy Office under Grant No. IAP-VI/10.
2015-10-05T00:00:00ZHill, LydiaChaplain, Mark Andrew JosephWolf, RolandKapelyukh, YuryThe Cytochrome P450 (CYP) system is involved in 90% of the human body’s interactions with xenobiotics and due to this, it has become an area of avid research including the creation of transgenic mice. This paper proposes a three-compartment model which is used to explain the drug metabolism in the Hepatic Reductase Null (HRN) mouse developed by the University of Dundee (Henderson, C. J., Otto, D. M. E., Carrie, D., Magnuson, M. A., McLaren, A. W., Rosewell, I. and Wolf, C. R. (2003) Inactivation of the hepatic cytochrome p450 system by conditional deletion of hepatic cytochrome p450 reductase. J. Biol. Chem. 278, 13480–13486). The model is compared with a two-compartment model using experimental data from studies using wild-type and HRN mice. This comparison allowed for metabolic differences between the two types of mice to be isolated. The three sets of drug data (Gefitinib, Midazolam and Thalidomide) showed that the transgenic mouse has a decreased rate of metabolism.Study of the three-dimensional shape and dynamics of coronal loops observed by Hinode/EISSyntelis, P.Gontikakis, C.Georgoulis, M. K.Alissandrakis, C. E.Tsinganos, K.https://hdl.handle.net/10023/94262022-04-08T15:30:35Z2012-10-01T00:00:00ZWe study plasma flows along selected coronal loops in NOAA Active Region 10926, observed on 3 December 2006 with Hinode’sEUVImaging Spectrograph (EIS). From the shape of the loops traced on intensity images and the Doppler shifts measured along their length we compute their three-dimensional (3D) shape and plasma flow velocity using a simple geometrical model. This calculation was performed for loops visible in the Fe viii 185 Å, Fe x 184 Å, Fe xii 195 Å, Fe xiii202 Å, and Fe xv 284 Å spectral lines. In most cases the flow is unidirectional from one footpoint to the other but there are also cases of draining motions from the top of the loops to their footpoints. Our results indicate that the same loop may show different flow patterns when observed in different spectral lines, suggesting a dynamically complex rather than a monolithic structure. We have also carried out magnetic extrapolations in the linear force-free field approximation using SOHO/MDI magnetograms, aiming toward a first-order identification of extrapolated magnetic field lines corresponding to the reconstructed loops. In all cases, the best-fit extrapolated lines exhibit left-handed twist (α<0), in agreement with the dominant twist of the region.
2012-10-01T00:00:00ZSyntelis, P.Gontikakis, C.Georgoulis, M. K.Alissandrakis, C. E.Tsinganos, K.We study plasma flows along selected coronal loops in NOAA Active Region 10926, observed on 3 December 2006 with Hinode’sEUVImaging Spectrograph (EIS). From the shape of the loops traced on intensity images and the Doppler shifts measured along their length we compute their three-dimensional (3D) shape and plasma flow velocity using a simple geometrical model. This calculation was performed for loops visible in the Fe viii 185 Å, Fe x 184 Å, Fe xii 195 Å, Fe xiii202 Å, and Fe xv 284 Å spectral lines. In most cases the flow is unidirectional from one footpoint to the other but there are also cases of draining motions from the top of the loops to their footpoints. Our results indicate that the same loop may show different flow patterns when observed in different spectral lines, suggesting a dynamically complex rather than a monolithic structure. We have also carried out magnetic extrapolations in the linear force-free field approximation using SOHO/MDI magnetograms, aiming toward a first-order identification of extrapolated magnetic field lines corresponding to the reconstructed loops. In all cases, the best-fit extrapolated lines exhibit left-handed twist (α<0), in agreement with the dominant twist of the region.Solar cycle variation of magnetic flux ropes in a quasi-static coronal evolution modelYeates, A. R.Constable, J. A.Martens, P. C. H.https://hdl.handle.net/10023/90372023-04-18T10:10:49Z2010-05-01T00:00:00ZThe structure of electric current and magnetic helicity in the solar corona is closely linked to solar activity over the 11-year cycle, yet is poorly understood. As an alternative to traditional current-free "potential field" extrapolations, we investigate a model for the global coronal magnetic field which is non-potential and time-dependent, following the build-up and transport of magnetic helicity due to flux emergence and large-scale photospheric motions. This helicity concentrates into twisted magnetic flux ropes, which may lose equilibrium and be ejected. Here, we consider how the magnetic structure predicted by this model-in particular the flux ropes-varies over the solar activity cycle, based on photospheric input data from six periods of cycle 23. The number of flux ropes doubles from minimum to maximum, following the total length of photospheric polarity inversion lines. However, the number of flux rope ejections increases by a factor of eight, following the emergence rate of active regions. This is broadly consistent with the observed cycle modulation of coronal mass ejections, although the actual rate of ejections in the simulation is about a fifth of the rate of observed events. The model predicts that, even at minimum, differential rotation will produce sheared, non-potential, magnetic structure at all latitudes.
2010-05-01T00:00:00ZYeates, A. R.Constable, J. A.Martens, P. C. H.The structure of electric current and magnetic helicity in the solar corona is closely linked to solar activity over the 11-year cycle, yet is poorly understood. As an alternative to traditional current-free "potential field" extrapolations, we investigate a model for the global coronal magnetic field which is non-potential and time-dependent, following the build-up and transport of magnetic helicity due to flux emergence and large-scale photospheric motions. This helicity concentrates into twisted magnetic flux ropes, which may lose equilibrium and be ejected. Here, we consider how the magnetic structure predicted by this model-in particular the flux ropes-varies over the solar activity cycle, based on photospheric input data from six periods of cycle 23. The number of flux ropes doubles from minimum to maximum, following the total length of photospheric polarity inversion lines. However, the number of flux rope ejections increases by a factor of eight, following the emergence rate of active regions. This is broadly consistent with the observed cycle modulation of coronal mass ejections, although the actual rate of ejections in the simulation is about a fifth of the rate of observed events. The model predicts that, even at minimum, differential rotation will produce sheared, non-potential, magnetic structure at all latitudes.Spontaneous reconnection at a separator current layer : I. Nature of the reconnectionE. H. Stevenson, JulieE. Parnell, Clarehttps://hdl.handle.net/10023/89592023-04-18T10:03:44Z2015-12-01T00:00:00ZMagnetic separators, which lie on the boundary between four topologically-distinct flux domains, are prime locations in three-dimensional magnetic fields for reconnection, especially in the magnetosphere between the planetary and interplanetary magnetic fields and also in the solar atmosphere. Little is known about the details of separator reconnection and so the aim of this paper, which is the first of two, is to study the properties of magnetic reconnection at a single separator. Three-dimensional, resistive magnetohydrodynamic numerical experiments are run to study separator reconnection starting from a magnetohydrostatic equilibrium which contains a twisted current layer along a single separator linking a pair of opposite-polarity null points. The resulting reconnection occurs in two phases. The first is short involving rapid reconnection in which the current at the separator is reduced by a factor of around 2.3. Most 75% of the magnetic energy is converted during this phase, via Ohmic dissipation, directly into internal energy, with just 0.1% going into kinetic energy. During this phase the reconnection occurs along most of the separator away from its ends (the nulls), but in an asymmetric manner which changes both spatially and temporally over time. The second phase is much longer and involves slow impulsive-bursty reconnection. Again Ohmic heating dominates over viscous damping. Here the reconnection occurs in small localized bursts at random anywhere along the separator.
2015-12-01T00:00:00ZE. H. Stevenson, JulieE. Parnell, ClareMagnetic separators, which lie on the boundary between four topologically-distinct flux domains, are prime locations in three-dimensional magnetic fields for reconnection, especially in the magnetosphere between the planetary and interplanetary magnetic fields and also in the solar atmosphere. Little is known about the details of separator reconnection and so the aim of this paper, which is the first of two, is to study the properties of magnetic reconnection at a single separator. Three-dimensional, resistive magnetohydrodynamic numerical experiments are run to study separator reconnection starting from a magnetohydrostatic equilibrium which contains a twisted current layer along a single separator linking a pair of opposite-polarity null points. The resulting reconnection occurs in two phases. The first is short involving rapid reconnection in which the current at the separator is reduced by a factor of around 2.3. Most 75% of the magnetic energy is converted during this phase, via Ohmic dissipation, directly into internal energy, with just 0.1% going into kinetic energy. During this phase the reconnection occurs along most of the separator away from its ends (the nulls), but in an asymmetric manner which changes both spatially and temporally over time. The second phase is much longer and involves slow impulsive-bursty reconnection. Again Ohmic heating dominates over viscous damping. Here the reconnection occurs in small localized bursts at random anywhere along the separator.Numerical simulations of footpoint driven coronal heatingO'Hara, Jenniferhttps://hdl.handle.net/10023/88712019-04-01T08:33:23Z2016-06-24T00:00:00ZMagnetic field permeates the solar atmosphere and plays a crucial role in the dynamics, energetics and structures observed. In particular, magnetic flux tubes provide the structure for coronal loops that extend from the solar surface into the corona. In this thesis, we present 3D numerical simulations examining the heating produced by reconnection between flux tubes driven by rotational footpoint motions. The basic model consists of two, initially aligned, flux tubes that are forced to interact by rotational driving velocities on the flux concentrations on the boundaries. A single, twisted current layer is created in the centre of the domain and strong, localised heating is produced. We extend this model by altering the number, distribution and strength of the sources, while maintaining the same total magnetic flux on the boundaries. The dynamical evolution and the resultant magnitude, distribution and timing of the heating events are examined for the different flux distributions. In all cases, the magnetic field is stressed by the boundary motions and a current grows within the domain. A comparison of cases with two and four sources shows that there are more locations of current concentrations, but with reduced maximum current density values, for the four source case. This produces weaker reconnection and less efficient heating. In addition, for the case with two sources, we also consider the effect of splitting up one of the sources into many smaller flux fragments. The evolution and heating are shown to be very similar to the two source case. The impact of increasing the strength of the background field between the flux tubes is also examined and we find that it delays and increases the strength of the heating, although by how much depends on the distribution of the flux sources.
2016-06-24T00:00:00ZO'Hara, JenniferMagnetic field permeates the solar atmosphere and plays a crucial role in the dynamics, energetics and structures observed. In particular, magnetic flux tubes provide the structure for coronal loops that extend from the solar surface into the corona. In this thesis, we present 3D numerical simulations examining the heating produced by reconnection between flux tubes driven by rotational footpoint motions. The basic model consists of two, initially aligned, flux tubes that are forced to interact by rotational driving velocities on the flux concentrations on the boundaries. A single, twisted current layer is created in the centre of the domain and strong, localised heating is produced. We extend this model by altering the number, distribution and strength of the sources, while maintaining the same total magnetic flux on the boundaries. The dynamical evolution and the resultant magnitude, distribution and timing of the heating events are examined for the different flux distributions. In all cases, the magnetic field is stressed by the boundary motions and a current grows within the domain. A comparison of cases with two and four sources shows that there are more locations of current concentrations, but with reduced maximum current density values, for the four source case. This produces weaker reconnection and less efficient heating. In addition, for the case with two sources, we also consider the effect of splitting up one of the sources into many smaller flux fragments. The evolution and heating are shown to be very similar to the two source case. The impact of increasing the strength of the background field between the flux tubes is also examined and we find that it delays and increases the strength of the heating, although by how much depends on the distribution of the flux sources.Effects of thermal conduction and compressive viscosity on the period ratio of the slow modeMacnamara, Cicely KrystynaRoberts, Bernardhttps://hdl.handle.net/10023/84232023-04-18T10:07:24Z2010-06-01T00:00:00ZAims: Increasing observational evidence of wave modes brings us to a closer understanding of the solar corona. Coronal seismology allows us to combine wave observations and theory to determine otherwise unknown parameters. The period ratio, P1/2P2, between the period P1 of the fundamental mode and the period P2 of its first overtone, is one such tool of coronal seismology and its departure from unity provides information about the structure of the corona. Methods: We consider analytically the effects of thermal conduction and compressive viscosity on the period ratio for a longitudinally propagating sound wave. Results: For coronal values of thermal conduction the effect on the period ratio is negligible. For compressive viscosity the effect on the period ratio may become important for some short hot loops. Conclusions: Damping typically has a small effect on the period ratio, suggesting that longitudinal structuring remains the most significant effect.
C.K.M. acknowledges financial support from the CarnegieTrust. Discussions with Dr. I. De Moortel and Prof. A. W. Hood are gratefully acknowledged
2010-06-01T00:00:00ZMacnamara, Cicely KrystynaRoberts, BernardAims: Increasing observational evidence of wave modes brings us to a closer understanding of the solar corona. Coronal seismology allows us to combine wave observations and theory to determine otherwise unknown parameters. The period ratio, P1/2P2, between the period P1 of the fundamental mode and the period P2 of its first overtone, is one such tool of coronal seismology and its departure from unity provides information about the structure of the corona. Methods: We consider analytically the effects of thermal conduction and compressive viscosity on the period ratio for a longitudinally propagating sound wave. Results: For coronal values of thermal conduction the effect on the period ratio is negligible. For compressive viscosity the effect on the period ratio may become important for some short hot loops. Conclusions: Damping typically has a small effect on the period ratio, suggesting that longitudinal structuring remains the most significant effect.Stochastic modelling of chromosomal segregation : errors can introduce correctionMatzavinos, AnastasiosRoitershtein, AlexanderShtylla, BlertaVoller, ZacharyLiu, SijiaChaplain, Mark A.J.https://hdl.handle.net/10023/77112023-04-25T23:42:10Z2014-07-01T00:00:00ZCell division is a complex process requiring the cell to have many internal checks so that division may proceed and be completed correctly. Failure to divide correctly can have serious consequences, including progression to cancer. During mitosis, chromosomal segregation is one such process that is crucial for successful progression. Accurate segregation of chromosomes during mitosis requires regulation of the interactions between chromosomes and spindle microtubules. If left uncorrected, chromosome attachment errors can cause chromosome segregation defects which have serious effects on cell fates. In early prometaphase, where kinetochores are exposed to multiple microtubules originating from the two poles, there are frequent errors in kinetochore-microtubule attachment. Erroneous attachments are classified into two categories, syntelic and merotelic. In this paper, we consider a stochastic model for a possible function of syntelic and merotelic kinetochores, and we provide theoretical evidence that merotely can contribute to lessening the stochastic noise in the time for completion of the mitotic process in eukaryotic cells.
2014-07-01T00:00:00ZMatzavinos, AnastasiosRoitershtein, AlexanderShtylla, BlertaVoller, ZacharyLiu, SijiaChaplain, Mark A.J.Cell division is a complex process requiring the cell to have many internal checks so that division may proceed and be completed correctly. Failure to divide correctly can have serious consequences, including progression to cancer. During mitosis, chromosomal segregation is one such process that is crucial for successful progression. Accurate segregation of chromosomes during mitosis requires regulation of the interactions between chromosomes and spindle microtubules. If left uncorrected, chromosome attachment errors can cause chromosome segregation defects which have serious effects on cell fates. In early prometaphase, where kinetochores are exposed to multiple microtubules originating from the two poles, there are frequent errors in kinetochore-microtubule attachment. Erroneous attachments are classified into two categories, syntelic and merotelic. In this paper, we consider a stochastic model for a possible function of syntelic and merotelic kinetochores, and we provide theoretical evidence that merotely can contribute to lessening the stochastic noise in the time for completion of the mitotic process in eukaryotic cells.The formation and eruption of magnetic flux ropes in solar and stellar coronaeGibb, Gordon Peter Samuelhttps://hdl.handle.net/10023/70692019-07-01T10:17:33Z2015-11-30T00:00:00ZFlux ropes are magnetic structures commonly found in the solar corona. They are thought to play an important role in solar flares and coronal mass ejections. Understanding their formation and eruption is of paramount importance for our understanding of space weather. In this thesis the magnetofrictional method is applied to simulate the formation of flux ropes and track their evolution up to eruption both in solar and stellar coronae.
Initially, the coronal magnetic field of a solar active region is simulated using observed magnetograms to drive the coronal evolution. From the sequence of magnetograms the formation of a flux rope is simulated, and compared with coronal observations.
Secondly a procedure to produce proxy SOLIS synoptic magnetograms from SDO/HMI and SOHO/MDI magnetograms is presented. This procedure allows SOLIS-like synoptic magnetograms to be produced during times when SOLIS magnetograms are not available.
Thirdly, a series of scaling laws for the formation and life-times of flux ropes in stellar coronae are determined as a function of stellar differential rotation and surface diffusion. These scaling laws can be used to infer the response of stellar coronae to the transport of magnetic fields at their surface.
Finally, global long-term simulations of stellar corona are carried out to determine the coronal response to flux emergence and differential rotation. A bipole emergence model is developed and is used in conjunction with a surface flux transport model in order to drive the global coronal evolution. These global simulations allow the flux, energy and flux rope distributions to be studied as a function of a star’s differential rotation and flux emergence rate.
2015-11-30T00:00:00ZGibb, Gordon Peter SamuelFlux ropes are magnetic structures commonly found in the solar corona. They are thought to play an important role in solar flares and coronal mass ejections. Understanding their formation and eruption is of paramount importance for our understanding of space weather. In this thesis the magnetofrictional method is applied to simulate the formation of flux ropes and track their evolution up to eruption both in solar and stellar coronae.
Initially, the coronal magnetic field of a solar active region is simulated using observed magnetograms to drive the coronal evolution. From the sequence of magnetograms the formation of a flux rope is simulated, and compared with coronal observations.
Secondly a procedure to produce proxy SOLIS synoptic magnetograms from SDO/HMI and SOHO/MDI magnetograms is presented. This procedure allows SOLIS-like synoptic magnetograms to be produced during times when SOLIS magnetograms are not available.
Thirdly, a series of scaling laws for the formation and life-times of flux ropes in stellar coronae are determined as a function of stellar differential rotation and surface diffusion. These scaling laws can be used to infer the response of stellar coronae to the transport of magnetic fields at their surface.
Finally, global long-term simulations of stellar corona are carried out to determine the coronal response to flux emergence and differential rotation. A bipole emergence model is developed and is used in conjunction with a surface flux transport model in order to drive the global coronal evolution. These global simulations allow the flux, energy and flux rope distributions to be studied as a function of a star’s differential rotation and flux emergence rate.Propagation and damping of MHD waves in the solar atmosphereKiddie, Greghttps://hdl.handle.net/10023/70542019-07-01T10:14:21Z2014-06-27T00:00:00ZQuasi-periodic disturbances have been observed in the outer solar atmosphere for many years. Although first interpreted as upflows (Schrijver et al. (1999)), they have been widely regarded as slow magneto-acoustic waves, due to their observed velocities and periods. Here we conduct a detailed analysis of the velocities of these disturbances across several wavelengths using the Atmospheric Imaging Assembly (AIA) on board the Solar Dynamics Observatory (SDO). We analysed 41 examples, including both sunspot and non-sunspot regions of the Sun. We found that the velocities of propagating disturbances (PDs) located at sunspots are more likely to be temperature dependent, whereas the velocities of PDs at non-sunspot locations do not show a clear temperature dependence. This suggests an interpretation in terms of slow magneto-acoustic waves in sunspots but the nature of PDs in non-sunspot (plage) regions remains unclear. Finally, we found that removing the contribution due to the cooler ions in the 193 wavelength suggests that a substantial part of the 193 emission of sunspot PDs can be attributed to the cool component of 193. Phase mixing is a well known and studied phenomenon in the solar corona, to enhance the dissipation of Alfvén waves (Heyvaerts and Priest (1982)). In this study we run numerical simulations of a continuously driven Alfvén wave in a low beta plasma along a uniform magnetic field. We model phase mixing by introducing a density inhomogeneity. Thermal conduction is then added into the model in the form of Braginskii thermal conduction. This acts to transport heat along the magnetic field. A parameter study will be carried out to investigate how changing the density structure and other parameters changes the results. We go on to consider the effect of wave reflection on phase mixing. We found that wave reflection has no effect on the damping of Alfvén waves but increases the heat in the system. We also consider a more realistic experiment where we drive both boundaries and study how the loop is heated in this situation. We also study what effect changing the frequency of one of the drivers so there is a small difference between the frequencies (10%) and a large difference (50%). We find the general behaviour is similar, but the heat is tilted.
We have investigated basic phase mixing model which incorporates the mass exchange between the corona and the chromosphere. Chromospheric evaporation is approximated by using a non dimensional version of the RTV (Rosner et al. (1978)) scaling laws, relating heating (by phase mixing of Alfvén waves), density and temperature. By combining this scaling law with our numerical MHD model for phase mixing of Alfvén waves, we investigate the modification of the density profile through the mass up flow. We find a rapid modification of the density profile, leading to drifting of the heating layers. We also find that similar results are own seen in the propagating Alfvén wave case when we incorporate the effects of reflection.
2014-06-27T00:00:00ZKiddie, GregQuasi-periodic disturbances have been observed in the outer solar atmosphere for many years. Although first interpreted as upflows (Schrijver et al. (1999)), they have been widely regarded as slow magneto-acoustic waves, due to their observed velocities and periods. Here we conduct a detailed analysis of the velocities of these disturbances across several wavelengths using the Atmospheric Imaging Assembly (AIA) on board the Solar Dynamics Observatory (SDO). We analysed 41 examples, including both sunspot and non-sunspot regions of the Sun. We found that the velocities of propagating disturbances (PDs) located at sunspots are more likely to be temperature dependent, whereas the velocities of PDs at non-sunspot locations do not show a clear temperature dependence. This suggests an interpretation in terms of slow magneto-acoustic waves in sunspots but the nature of PDs in non-sunspot (plage) regions remains unclear. Finally, we found that removing the contribution due to the cooler ions in the 193 wavelength suggests that a substantial part of the 193 emission of sunspot PDs can be attributed to the cool component of 193. Phase mixing is a well known and studied phenomenon in the solar corona, to enhance the dissipation of Alfvén waves (Heyvaerts and Priest (1982)). In this study we run numerical simulations of a continuously driven Alfvén wave in a low beta plasma along a uniform magnetic field. We model phase mixing by introducing a density inhomogeneity. Thermal conduction is then added into the model in the form of Braginskii thermal conduction. This acts to transport heat along the magnetic field. A parameter study will be carried out to investigate how changing the density structure and other parameters changes the results. We go on to consider the effect of wave reflection on phase mixing. We found that wave reflection has no effect on the damping of Alfvén waves but increases the heat in the system. We also consider a more realistic experiment where we drive both boundaries and study how the loop is heated in this situation. We also study what effect changing the frequency of one of the drivers so there is a small difference between the frequencies (10%) and a large difference (50%). We find the general behaviour is similar, but the heat is tilted.
We have investigated basic phase mixing model which incorporates the mass exchange between the corona and the chromosphere. Chromospheric evaporation is approximated by using a non dimensional version of the RTV (Rosner et al. (1978)) scaling laws, relating heating (by phase mixing of Alfvén waves), density and temperature. By combining this scaling law with our numerical MHD model for phase mixing of Alfvén waves, we investigate the modification of the density profile through the mass up flow. We find a rapid modification of the density profile, leading to drifting of the heating layers. We also find that similar results are own seen in the propagating Alfvén wave case when we incorporate the effects of reflection.On the properties of single-separator MHS equilibria and the nature of separator reconnectionStevenson, Julie E. H.https://hdl.handle.net/10023/66782019-04-01T08:33:27Z2015-06-26T00:00:00ZThis thesis considers the properties of MHS equilibria formed through non-resistive MHD relaxation of analytical non-potential magnetic field models, which contain two null points connected by a generic separator. Four types of analytical magnetic fields are formulated, with different forms of current. The magnetic field model which has a uniform current directed along the separator, is used through the rest of this thesis to form MHS equilibria and to study reconnection.
This magnetic field, which is not force-free, embedded in a high-beta plasma, relaxes non-resistively using a 3D MHD code. The relaxation causes the field about the separator to collapse leading to a twisted current layer forming along the separator. The MHS equilibrium current layer slowly becomes stronger, longer, wider and thinner with time. Its properties, and the properties of the plasma, are found to depend on the initial parameters of the magnetic field, which control the geometry of the magnetic configuration.
Such a MHS equilibria is used in a high plasma-beta reconnection experiment. An anomalous resistivity ensures that only the central strong current in the separator current layer is dissipated. The reconnection occurs in two phases characterised by fast and slow reconnection, respectively. Waves, launched from the diffusion site, communicate the loss of force balance at the current layer and set up flows in the system. The energy transport in this system is dominated by Ohmic dissipation.
Several methods are presented which allow a low plasma-beta value to be approached in the single-separator model. One method is chosen and this model is relaxed non-resistively to form a MHS equilibrium. A twisted current layer grows along the separator, containing stronger current than in the high plasma-beta experiments, and has a local enhancement in pressure inside it. The growth rate of this current layer is similar to that found in the high plasma-beta experiments, however, the current layer becomes thinner and narrower over time.
2015-06-26T00:00:00ZStevenson, Julie E. H.This thesis considers the properties of MHS equilibria formed through non-resistive MHD relaxation of analytical non-potential magnetic field models, which contain two null points connected by a generic separator. Four types of analytical magnetic fields are formulated, with different forms of current. The magnetic field model which has a uniform current directed along the separator, is used through the rest of this thesis to form MHS equilibria and to study reconnection.
This magnetic field, which is not force-free, embedded in a high-beta plasma, relaxes non-resistively using a 3D MHD code. The relaxation causes the field about the separator to collapse leading to a twisted current layer forming along the separator. The MHS equilibrium current layer slowly becomes stronger, longer, wider and thinner with time. Its properties, and the properties of the plasma, are found to depend on the initial parameters of the magnetic field, which control the geometry of the magnetic configuration.
Such a MHS equilibria is used in a high plasma-beta reconnection experiment. An anomalous resistivity ensures that only the central strong current in the separator current layer is dissipated. The reconnection occurs in two phases characterised by fast and slow reconnection, respectively. Waves, launched from the diffusion site, communicate the loss of force balance at the current layer and set up flows in the system. The energy transport in this system is dominated by Ohmic dissipation.
Several methods are presented which allow a low plasma-beta value to be approached in the single-separator model. One method is chosen and this model is relaxed non-resistively to form a MHS equilibrium. A twisted current layer grows along the separator, containing stronger current than in the high plasma-beta experiments, and has a local enhancement in pressure inside it. The growth rate of this current layer is similar to that found in the high plasma-beta experiments, however, the current layer becomes thinner and narrower over time.MHD simulations of coronal heatingTam, Kuan V.https://hdl.handle.net/10023/63732019-07-01T10:06:04Z2014-12-01T00:00:00ZThe problem of heating the solar corona requires the conversion of magnetic energy into thermal energy. Presently, there are two promising mechanisms for heating the solar corona: wave heating and nanoflare heating. In this thesis, we consider nanoflare heating only. Previous modelling has shown that the kink instability can trigger energy release and heating in large scale loops, as the field rapidly relaxes to a lower energy state under the Taylor relaxation theory. Two distinct experiments were developed to understand the coronal heating problem: the avalanche effect within a multiple loop system, and the importance of thermal conduction and optically thin radiation during the evolution of the kinked-unstable coronal magnetic field.
The first experiment showed that a kink-unstable thread can also destabilise nearby threads under some conditions. The second experiment showed that the inclusion of thermal conduction and optically thin radiation causes significant change to the internal energy of the coronal loop. After the initial instability occurs, there is continual heating throughout the relaxation process. Our simulation results show that the data is consistent with observation values, and the relaxation process can take over 200 seconds to reach the final relaxed state. The inclusion of both effects perhaps provides a more realistic and rapid heating experiment compared to previous investigations.
2014-12-01T00:00:00ZTam, Kuan V.The problem of heating the solar corona requires the conversion of magnetic energy into thermal energy. Presently, there are two promising mechanisms for heating the solar corona: wave heating and nanoflare heating. In this thesis, we consider nanoflare heating only. Previous modelling has shown that the kink instability can trigger energy release and heating in large scale loops, as the field rapidly relaxes to a lower energy state under the Taylor relaxation theory. Two distinct experiments were developed to understand the coronal heating problem: the avalanche effect within a multiple loop system, and the importance of thermal conduction and optically thin radiation during the evolution of the kinked-unstable coronal magnetic field.
The first experiment showed that a kink-unstable thread can also destabilise nearby threads under some conditions. The second experiment showed that the inclusion of thermal conduction and optically thin radiation causes significant change to the internal energy of the coronal loop. After the initial instability occurs, there is continual heating throughout the relaxation process. Our simulation results show that the data is consistent with observation values, and the relaxation process can take over 200 seconds to reach the final relaxed state. The inclusion of both effects perhaps provides a more realistic and rapid heating experiment compared to previous investigations.On the topology of global coronal magnetic fieldsEdwards, Sarah J.https://hdl.handle.net/10023/58962019-04-01T08:33:46Z2014-12-01T00:00:00ZThis thesis considers the magnetic topology of the global solar corona. To understand the magnetic topology we use the magnetic skeleton which provides us with a robust description of the magnetic field. To do this we use a Potential Field model extrapolated from observations of the photospheric magnetic field. Various measurements of the photospheric magnetic field are used from both ground-based observatories (Kitt-Peak and SOLIS) and space-based observatories (MDI and HMI).
Using the magnetic skeleton we characterise particular topological structures and discuss their variations throughout the solar cycle. We find that, from the topology, there are two types of solar minimum magnetic field and one type of solar maximum. The global structure of the coronal magnetic field depends on the relative strengths of the polar fields and the low-latitude fields. During a strong solar dipole minimum the heliospheric current sheet sits near the equator and the heliospheric current sheet curtains enclose a large amount of mixed polarity field which is associated with many low-altitude null points. In a weak solar dipole minimum the heliospheric current sheet becomes warped and large scale topological features can form that are associated with weak magnetic field regions. At solar maximum the heliospheric current sheet is highly warped and there are more null points at high altitudes than at solar minimum.
The number of null points in a magnetic field can be seen as a measure of the complexity of the field so this is investigated. We find that the number of nulls above 10Mm falls off with height as a power law whose slope depends on the phase of the solar cycle.
We compare the magnetic topology we found at particular times with observations of the Doppler velocity and intensity around particular active regions to see if it is possible to determine whether plasma upflows at the edge of active regions are linked to open field regions.
2014-12-01T00:00:00ZEdwards, Sarah J.This thesis considers the magnetic topology of the global solar corona. To understand the magnetic topology we use the magnetic skeleton which provides us with a robust description of the magnetic field. To do this we use a Potential Field model extrapolated from observations of the photospheric magnetic field. Various measurements of the photospheric magnetic field are used from both ground-based observatories (Kitt-Peak and SOLIS) and space-based observatories (MDI and HMI).
Using the magnetic skeleton we characterise particular topological structures and discuss their variations throughout the solar cycle. We find that, from the topology, there are two types of solar minimum magnetic field and one type of solar maximum. The global structure of the coronal magnetic field depends on the relative strengths of the polar fields and the low-latitude fields. During a strong solar dipole minimum the heliospheric current sheet sits near the equator and the heliospheric current sheet curtains enclose a large amount of mixed polarity field which is associated with many low-altitude null points. In a weak solar dipole minimum the heliospheric current sheet becomes warped and large scale topological features can form that are associated with weak magnetic field regions. At solar maximum the heliospheric current sheet is highly warped and there are more null points at high altitudes than at solar minimum.
The number of null points in a magnetic field can be seen as a measure of the complexity of the field so this is investigated. We find that the number of nulls above 10Mm falls off with height as a power law whose slope depends on the phase of the solar cycle.
We compare the magnetic topology we found at particular times with observations of the Doppler velocity and intensity around particular active regions to see if it is possible to determine whether plasma upflows at the edge of active regions are linked to open field regions.Vortical control of forced two-dimensional turbulenceFontane, Jerome Jacob LouisDritschel, David GerardScott, Richard Kirknesshttps://hdl.handle.net/10023/52362023-04-18T09:50:15Z2013-01-14T00:00:00ZA new numerical technique for the simulation of forced two-dimensional turbulence[D. Dritschel and J. Fontane, “The combined Lagrangian advection method,” J. Comput. Phys.229, 5408–5417 (Year: 2010)10.1016/j.jcp.2010.03.048] is used to examine the validity of Kraichnan-Batchelor scaling laws at higher Reynolds number than previously accessible with classical pseudo-spectral methods, making use of large simulation ensembles to allow a detailed consideration of the inverse cascade in a quasi-steady state. Our results support the recent finding of Scott [R. Scott, “Nonrobustness of the two-dimensional turbulent inverse cascade,” Phys. Rev. E75, 046301 (Year: 2007)10.1103/PhysRevE.75.046301], namely that when a direct enstrophy cascading range is well-represented numerically, a steeper energy spectrum proportional to k−2 is obtained in place of the classical k −5/3 prediction. It is further shown that this steep spectrum is associated with a faster growth of energy at large scales, scaling like t −1 rather than Kraichnan's prediction of t −3/2. The deviation from Kraichnan's theory is related to the emergence of a population of vortices that dominate the distribution of energy across scales, and whose number density and vorticity distribution with respect to vortex area are related to the shape of the enstrophy spectrum. An analytical model is proposed which closely matches the numerical spectra between the large scales and the forcing scale.
Jérôme Fontane is supported by the European Community in the framework of the CONVECT project under Grant No. PIEF-GA-2008-221003.
2013-01-14T00:00:00ZFontane, Jerome Jacob LouisDritschel, David GerardScott, Richard KirknessA new numerical technique for the simulation of forced two-dimensional turbulence[D. Dritschel and J. Fontane, “The combined Lagrangian advection method,” J. Comput. Phys.229, 5408–5417 (Year: 2010)10.1016/j.jcp.2010.03.048] is used to examine the validity of Kraichnan-Batchelor scaling laws at higher Reynolds number than previously accessible with classical pseudo-spectral methods, making use of large simulation ensembles to allow a detailed consideration of the inverse cascade in a quasi-steady state. Our results support the recent finding of Scott [R. Scott, “Nonrobustness of the two-dimensional turbulent inverse cascade,” Phys. Rev. E75, 046301 (Year: 2007)10.1103/PhysRevE.75.046301], namely that when a direct enstrophy cascading range is well-represented numerically, a steeper energy spectrum proportional to k−2 is obtained in place of the classical k −5/3 prediction. It is further shown that this steep spectrum is associated with a faster growth of energy at large scales, scaling like t −1 rather than Kraichnan's prediction of t −3/2. The deviation from Kraichnan's theory is related to the emergence of a population of vortices that dominate the distribution of energy across scales, and whose number density and vorticity distribution with respect to vortex area are related to the shape of the enstrophy spectrum. An analytical model is proposed which closely matches the numerical spectra between the large scales and the forcing scale.Resistive magnetohydrodynamic reconnection : resolving long-term, chaotic dynamicsKeppens, R.Porth, O.Galsgaard, K.Frederiksen, J.T.Restante, A.L.Lapenta, G.Parnell, C.https://hdl.handle.net/10023/52332022-04-05T14:30:50Z2013-09-13T00:00:00ZIn this paper, we address the long-term evolution of an idealised double current system entering reconnection regimes where chaotic behavior plays a prominent role. Our aim is to quantify the energetics in high magnetic Reynolds number evolutions, enriched by secondary tearing events, multiple magnetic island coalescence, and compressive versus resistive heating scenarios. Our study will pay particular attention to the required numerical resolutions achievable by modern (grid-adaptive) computations, and comment on the challenge associated with resolving chaotic island formation and interaction. We will use shock-capturing, conservative, grid-adaptive simulations for investigating trends dominated by both physical (resistivity) and numerical (resolution) parameters, and confront them with (visco-)resistive magnetohydrodynamic simulations performed with very different, but equally widely used discretization schemes. This will allow us to comment on the obtained evolutions in a manner irrespective of the adopted discretization strategy. Our findings demonstrate that all schemes used (finite volume based shock-capturing, high order finite differences, and particle in cell-like methods) qualitatively agree on the various evolutionary stages, and that resistivity values of order 0.001 already can lead to chaotic island appearance. However, none of the methods exploited demonstrates convergence in the strong sense in these chaotic regimes. At the same time, nonperturbed tests for showing convergence over long time scales in ideal to resistive regimes are provided as well, where all methods are shown to agree. Both the advantages and disadvantages of specific discretizations as applied to this challenging problem are discussed.
We acknowledge financial support from the EC FP7/2007-2013 Grant Agreement SWIFF (No. 263340) and from project GOA/2009/009 (KU Leuven). This research has been funded by the Interuniversity Attraction Poles Programme initiated by the Belgian Science Policy Office (IAP P7/08 CHARM). Part of the simulations used the infrastructure of the VSC-Flemish Supercomputer Center, funded by the Hercules Foundation and the Flemish Government-Department EWI. Another part of the simulations was done at the former Danish Center for Scientific Computing at Copenhagen University which is now part of DeIC Danish e-Infrastructure Cooperation.
2013-09-13T00:00:00ZKeppens, R.Porth, O.Galsgaard, K.Frederiksen, J.T.Restante, A.L.Lapenta, G.Parnell, C.In this paper, we address the long-term evolution of an idealised double current system entering reconnection regimes where chaotic behavior plays a prominent role. Our aim is to quantify the energetics in high magnetic Reynolds number evolutions, enriched by secondary tearing events, multiple magnetic island coalescence, and compressive versus resistive heating scenarios. Our study will pay particular attention to the required numerical resolutions achievable by modern (grid-adaptive) computations, and comment on the challenge associated with resolving chaotic island formation and interaction. We will use shock-capturing, conservative, grid-adaptive simulations for investigating trends dominated by both physical (resistivity) and numerical (resolution) parameters, and confront them with (visco-)resistive magnetohydrodynamic simulations performed with very different, but equally widely used discretization schemes. This will allow us to comment on the obtained evolutions in a manner irrespective of the adopted discretization strategy. Our findings demonstrate that all schemes used (finite volume based shock-capturing, high order finite differences, and particle in cell-like methods) qualitatively agree on the various evolutionary stages, and that resistivity values of order 0.001 already can lead to chaotic island appearance. However, none of the methods exploited demonstrates convergence in the strong sense in these chaotic regimes. At the same time, nonperturbed tests for showing convergence over long time scales in ideal to resistive regimes are provided as well, where all methods are shown to agree. Both the advantages and disadvantages of specific discretizations as applied to this challenging problem are discussed.The effect of slip length on vortex rebound from a rigid boundarySutherland, D.Macaskill, C.Dritschel, D.G.https://hdl.handle.net/10023/52322023-04-18T09:53:11Z2013-09-23T00:00:00ZThe problem of a dipole incident normally on a rigid boundary, for moderate to large Reynolds numbers, has recently been treated numerically using a volume penalisation method by Nguyen van yen, Farge, and Schneider [Phys. Rev. Lett.106, 184502 (2011)]. Their results indicate that energy dissipating structures persist in the inviscid limit. They found that the use of penalisation methods intrinsically introduces some slip at the boundary wall, where the slip approaches zero as the Reynolds number goes to infinity, so reducing to the no-slip case in this limit. We study the same problem, for both no-slip and partial slip cases, using compact differences on a Chebyshev grid in the direction normal to the wall and Fourier methods in the direction along the wall. We find that for the no-slip case there is no indication of the persistence of energy dissipating structures in the limit as viscosity approaches zero and that this also holds for any fixed slip length. However, when the slip length is taken to vary inversely with Reynolds number then the results of Nguyen van yen et al. are regained. It therefore appears that the prediction that energy dissipating structures persist in the inviscid limit follows from the two limits of wall slip length going to zero, and viscosity going to zero, not being treated independently in their use of the volume penalisation method.
2013-09-23T00:00:00ZSutherland, D.Macaskill, C.Dritschel, D.G.The problem of a dipole incident normally on a rigid boundary, for moderate to large Reynolds numbers, has recently been treated numerically using a volume penalisation method by Nguyen van yen, Farge, and Schneider [Phys. Rev. Lett.106, 184502 (2011)]. Their results indicate that energy dissipating structures persist in the inviscid limit. They found that the use of penalisation methods intrinsically introduces some slip at the boundary wall, where the slip approaches zero as the Reynolds number goes to infinity, so reducing to the no-slip case in this limit. We study the same problem, for both no-slip and partial slip cases, using compact differences on a Chebyshev grid in the direction normal to the wall and Fourier methods in the direction along the wall. We find that for the no-slip case there is no indication of the persistence of energy dissipating structures in the limit as viscosity approaches zero and that this also holds for any fixed slip length. However, when the slip length is taken to vary inversely with Reynolds number then the results of Nguyen van yen et al. are regained. It therefore appears that the prediction that energy dissipating structures persist in the inviscid limit follows from the two limits of wall slip length going to zero, and viscosity going to zero, not being treated independently in their use of the volume penalisation method.Shallow-water vortex equilibria and their stabilityPłotka, H.Dritschel, D.G.https://hdl.handle.net/10023/47622023-04-18T09:51:41Z2011-01-01T00:00:00ZWe first describe the equilibrium form and stability of steadily-rotating simply-connected vortex patches in the single-layer quasi-geostrophic model of geophysical fluid dynamics. This model, valid for rotating shallow-water flow in the limit of small Rossby and Froude numbers, has an intrinsic length scale L called the "Rossby deformation length" relating the strength of stratification to that of the background rotation rate. Specifically, L = c/f where c = √gH is a characteristic gravity-wave speed, g is gravity (or "reduced" gravity in a two-layer context where one layer is infinitely deep), H is the mean active layer depth, and f is the Coriolis frequency (here constant). We next introduce ageostrophic effects by using the full shallow-water model to generate what we call "quasi-equilibria". These equilibria are not strictly steady, but radiate such weak gravity waves that they are steady for all practical purposes. Through an artificial ramping procedure, we ramp up the potential vorticity anomaly of the fluid particles in our quasi-geostrophic equilibria to obtain shallow-water quasi-equilibria at finite Rossby number. We show a few examples of these states in this paper.
2011-01-01T00:00:00ZPłotka, H.Dritschel, D.G.We first describe the equilibrium form and stability of steadily-rotating simply-connected vortex patches in the single-layer quasi-geostrophic model of geophysical fluid dynamics. This model, valid for rotating shallow-water flow in the limit of small Rossby and Froude numbers, has an intrinsic length scale L called the "Rossby deformation length" relating the strength of stratification to that of the background rotation rate. Specifically, L = c/f where c = √gH is a characteristic gravity-wave speed, g is gravity (or "reduced" gravity in a two-layer context where one layer is infinitely deep), H is the mean active layer depth, and f is the Coriolis frequency (here constant). We next introduce ageostrophic effects by using the full shallow-water model to generate what we call "quasi-equilibria". These equilibria are not strictly steady, but radiate such weak gravity waves that they are steady for all practical purposes. Through an artificial ramping procedure, we ramp up the potential vorticity anomaly of the fluid particles in our quasi-geostrophic equilibria to obtain shallow-water quasi-equilibria at finite Rossby number. We show a few examples of these states in this paper.Boundary layer flow beneath an internal solitary wave of elevationCarr, MagdaDavies, P Ahttps://hdl.handle.net/10023/43312023-04-18T09:40:38Z2010-02-01T00:00:00ZThe wave-induced flow over a fixed bottom boundary beneath an internal solitary wave of elevation propagating in an unsheared, two-layer, stably stratified fluid is investigated experimentally. Measurements of the velocity field close to the bottom boundary are presented to illustrate that in the lower layer the fluid velocity near the bottom reverses direction as the wave decelerates while higher in the water column the fluid velocity is in the same direction as the wave propagation. The observation is similar in nature to that for wave-induced flow beneath a surface solitary wave. Contrary to theoretical predictions for internal solitary waves, no evidence for either boundary layer separation or vortex formation is found beneath the front half of the wave in the adverse pressure gradient region of the flow.
2010-02-01T00:00:00ZCarr, MagdaDavies, P AThe wave-induced flow over a fixed bottom boundary beneath an internal solitary wave of elevation propagating in an unsheared, two-layer, stably stratified fluid is investigated experimentally. Measurements of the velocity field close to the bottom boundary are presented to illustrate that in the lower layer the fluid velocity near the bottom reverses direction as the wave decelerates while higher in the water column the fluid velocity is in the same direction as the wave propagation. The observation is similar in nature to that for wave-induced flow beneath a surface solitary wave. Contrary to theoretical predictions for internal solitary waves, no evidence for either boundary layer separation or vortex formation is found beneath the front half of the wave in the adverse pressure gradient region of the flow.An analytical, phenomenological and numerical study of geophysical and magnetohydrodynamic turbulence in two dimensionsBlackbourn, Luke A. K.https://hdl.handle.net/10023/42912019-07-01T10:12:10Z2013-11-29T00:00:00ZIn this thesis I study a variety of two-dimensional turbulent systems using a
mixed analytical, phenomenological and numerical approach. The systems under
consideration are governed by the two-dimensional Navier-Stokes (2DNS),
surface quasigeostrophic (SQG), alpha-turbulence and magnetohydrodynamic (MHD)
equations. The main analytical focus is on the number of degrees of freedom
of a given system, defined as the least value $N$ such that all
$n$-dimensional ($n$ ≥ $N$) volume elements along a given trajectory contract
during the course of evolution. By equating $N$ with the number of active
Fourier-space modes, that is the number of modes in the inertial range, and
assuming power-law spectra in the inertial range, the scaling of $N$ with the
Reynolds number $Re$ allows bounds to be put on the exponent of the spectrum.
This allows the recovery of analytic results that have until now only been
derived phenomenologically, such as the $k$[superscript(-5/3)] energy spectrum in the
energy inertial range in SQG turbulence. Phenomenologically I study the modal
interactions that control the transfer of various conserved quantities. Among
other results I show that in MHD dynamo triads (those converting kinetic into
magnetic energy) are associated with a direct magnetic energy flux while
anti-dynamo triads (those converting magnetic into kinetic energy) are
associated with an inverse magnetic energy flux. As both dynamo and anti-dynamo
interacting triads are integral parts of the direct energy transfer, the
anti-dynamo inverse flux partially neutralises the dynamo direct flux, arguably
resulting in relatively weak direct energy transfer and giving rise to dynamo
saturation. These theoretical results are backed up by high resolution
numerical simulations, out of which have emerged some new results such as the
suggestion that for alpha turbulence the generalised enstrophy spectra are not
closely approximated by those that have been derived phenomenologically, and
new theories may be needed in order to explain them.
2013-11-29T00:00:00ZBlackbourn, Luke A. K.In this thesis I study a variety of two-dimensional turbulent systems using a
mixed analytical, phenomenological and numerical approach. The systems under
consideration are governed by the two-dimensional Navier-Stokes (2DNS),
surface quasigeostrophic (SQG), alpha-turbulence and magnetohydrodynamic (MHD)
equations. The main analytical focus is on the number of degrees of freedom
of a given system, defined as the least value $N$ such that all
$n$-dimensional ($n$ ≥ $N$) volume elements along a given trajectory contract
during the course of evolution. By equating $N$ with the number of active
Fourier-space modes, that is the number of modes in the inertial range, and
assuming power-law spectra in the inertial range, the scaling of $N$ with the
Reynolds number $Re$ allows bounds to be put on the exponent of the spectrum.
This allows the recovery of analytic results that have until now only been
derived phenomenologically, such as the $k$[superscript(-5/3)] energy spectrum in the
energy inertial range in SQG turbulence. Phenomenologically I study the modal
interactions that control the transfer of various conserved quantities. Among
other results I show that in MHD dynamo triads (those converting kinetic into
magnetic energy) are associated with a direct magnetic energy flux while
anti-dynamo triads (those converting magnetic into kinetic energy) are
associated with an inverse magnetic energy flux. As both dynamo and anti-dynamo
interacting triads are integral parts of the direct energy transfer, the
anti-dynamo inverse flux partially neutralises the dynamo direct flux, arguably
resulting in relatively weak direct energy transfer and giving rise to dynamo
saturation. These theoretical results are backed up by high resolution
numerical simulations, out of which have emerged some new results such as the
suggestion that for alpha turbulence the generalised enstrophy spectra are not
closely approximated by those that have been derived phenomenologically, and
new theories may be needed in order to explain them.Magnetohydrodynamics dynamical relaxation of coronal magnetic fields : IV. 3D tilted nullsFuentes-Fernandez, JorgeParnell, Clare E.https://hdl.handle.net/10023/40842024-03-02T00:43:00Z2013-09-12T00:00:00ZIn this paper we study current accumulations in 3D "tilted" nulls formed by a folding of the spine and fan. A non-zero component of current parallel to the fan is required such that the null's fan plane and spine are not perpendicular. Our aims are to provide valid magnetohydrostatic equilibria and to describe the current accumulations in various cases involving finite plasma pressure.To create our equilibrium current structures we use a full, non-resistive, magnetohydrodynamic (MHD) code so that no reconnection is allowed. A series of experiments are performed in which a perturbed 3D tilted null relaxes towards an equilibrium via real, viscous damping forces. Changes to the initial plasma pressure and to magnetic parameters are investigated systematically.An initially tilted fan is associated with a non-zero Lorentz force that drives the fan and spine to collapse towards each other, in a similar manner to the collapse of a 2D X-point. In the final equilibrium state for an initially radial null with only the current perpendicular to the spine, the current concentrates along the tilt axis of the fan and in a layer about the null point with a sharp peak at the null itself. The continued growth of this peak indicates that the system is in an asymptotic regime involving an infinite time singularity at the null. When the initial tilt disturbance (current perpendicular to the spine) is combined with a spiral-type disturbance (current parallel to the spine), the final current density concentrates in three regions: one on the fan along its tilt axis and two around the spine, above and below the fan. The increased area of current accumulation leads to a weakening of the singularity formed at the null. The 3D spine-fan collapse with generic current studied here provides the ideal setup for non-steady reconnection studies.
2013-09-12T00:00:00ZFuentes-Fernandez, JorgeParnell, Clare E.In this paper we study current accumulations in 3D "tilted" nulls formed by a folding of the spine and fan. A non-zero component of current parallel to the fan is required such that the null's fan plane and spine are not perpendicular. Our aims are to provide valid magnetohydrostatic equilibria and to describe the current accumulations in various cases involving finite plasma pressure.To create our equilibrium current structures we use a full, non-resistive, magnetohydrodynamic (MHD) code so that no reconnection is allowed. A series of experiments are performed in which a perturbed 3D tilted null relaxes towards an equilibrium via real, viscous damping forces. Changes to the initial plasma pressure and to magnetic parameters are investigated systematically.An initially tilted fan is associated with a non-zero Lorentz force that drives the fan and spine to collapse towards each other, in a similar manner to the collapse of a 2D X-point. In the final equilibrium state for an initially radial null with only the current perpendicular to the spine, the current concentrates along the tilt axis of the fan and in a layer about the null point with a sharp peak at the null itself. The continued growth of this peak indicates that the system is in an asymptotic regime involving an infinite time singularity at the null. When the initial tilt disturbance (current perpendicular to the spine) is combined with a spiral-type disturbance (current parallel to the spine), the final current density concentrates in three regions: one on the fan along its tilt axis and two around the spine, above and below the fan. The increased area of current accumulation leads to a weakening of the singularity formed at the null. The 3D spine-fan collapse with generic current studied here provides the ideal setup for non-steady reconnection studies.Magnetohydrodynamics dynamical relaxation of coronal magnetic fields : III. 3D spiral nullsFuentes-Fernandez, JorgeParnell, Clare E.https://hdl.handle.net/10023/39782022-04-14T11:32:06Z2012-06-01T00:00:00ZContext: The majority of studies on stressed 3D magnetic null points consider magnetic reconnection driven by an external perturbation, but the formation of a genuine current sheet equilibrium remains poorly understood. This problem has been considered more extensively in two-dimensions, but lacks a generalization into 3D fields. Aims: 3D magnetic nulls are more complex than 2D nulls and the field can take a greater range of magnetic geometries local to the null. Here, we focus on one type and consider the dynamical non-resistive relaxation of 3D spiral nulls with initial spine-aligned current. We aim to provide a valid magnetohydrostatic equilibrium, and describe the electric current accumulations in various cases, involving a finite plasma pressure. Methods: A full MHD code is used, with the resistivity set to zero so that reconnection is not allowed, to run a series of experiments in which a perturbed spiral 3D null point is allowed to relax towards an equilibrium, via real, viscous damping forces. Changes to the initial plasma pressure and other magnetic parameters are investigated systematically. Results: For the axi-symmetric case, the evolution of the field and the plasma is such that it concentrates the current density in two cone-shaped regions along the spine, thus concentrating the twist of the magnetic field around the spine, leaving a radial configuration in the fan plane. The plasma pressure redistributes in order to maintain the current density accumulations. However, it is found that changes in the initial plasma pressure do not modify the final state significantly. In the cases where the initial magnetic field is not axi-symmetric, a infinite-time singularity of current perpendicular to the fan is found at the location of the null.
2012-06-01T00:00:00ZFuentes-Fernandez, JorgeParnell, Clare E.Context: The majority of studies on stressed 3D magnetic null points consider magnetic reconnection driven by an external perturbation, but the formation of a genuine current sheet equilibrium remains poorly understood. This problem has been considered more extensively in two-dimensions, but lacks a generalization into 3D fields. Aims: 3D magnetic nulls are more complex than 2D nulls and the field can take a greater range of magnetic geometries local to the null. Here, we focus on one type and consider the dynamical non-resistive relaxation of 3D spiral nulls with initial spine-aligned current. We aim to provide a valid magnetohydrostatic equilibrium, and describe the electric current accumulations in various cases, involving a finite plasma pressure. Methods: A full MHD code is used, with the resistivity set to zero so that reconnection is not allowed, to run a series of experiments in which a perturbed spiral 3D null point is allowed to relax towards an equilibrium, via real, viscous damping forces. Changes to the initial plasma pressure and other magnetic parameters are investigated systematically. Results: For the axi-symmetric case, the evolution of the field and the plasma is such that it concentrates the current density in two cone-shaped regions along the spine, thus concentrating the twist of the magnetic field around the spine, leaving a radial configuration in the fan plane. The plasma pressure redistributes in order to maintain the current density accumulations. However, it is found that changes in the initial plasma pressure do not modify the final state significantly. In the cases where the initial magnetic field is not axi-symmetric, a infinite-time singularity of current perpendicular to the fan is found at the location of the null.Inhomogeneous magnetic fields in the solar atmosphereBrowning, Philippahttps://hdl.handle.net/10023/38302019-07-01T10:17:37Z1984-01-01T00:00:00ZThe magnetic field in the solar atmosphere is highly inhomogeneous. In the photosphere, the field is concentrated into intense flux tubes and the coronal magnetic field consists of many loops and regions of open field. This thesis investigates some of the basic properties of inhomogeneous solar magnetic fields.
First of all, the equilibrium properties of untwisted flux tubes, confined by a spatially varying external pressure distribution, are investigated. The behaviour of thick flux tubes, including the effects of a transverse field component and a variation in the field across the tube, is compared with slender flux tube theory. It is shown that slender tube theory is accurate for tubes which are approximately slender, but that completely misleading results can be obtained by applying slender tube theory if the pressure distribution is not slowly varying.
Twisted flux tubes are then studied, with the aim of finding how twisting affects a tube confined by an inhomogeneous pressure distribution. It is shown that, in general, a tube expands as it is twisted; this is illustrated both by extensions to slender tube theory and by some exact analytical solutions. A family of linear solutions is used to model the evolution of a finite tube confined by a falling external pressure. It is shown that, if the confining pressure falls too low, the tube may burst, with some dynamic process ensuing.
The equilibrium properties of a flux tube with a curved axis are then investigated, with the main aim of modelling coronal loops. Previous theory for the equilibrium of a curved slender flux tube in a gravitationally stratified atmosphere, with a balance between magnetic buoyancy and tension forces, is extended to take into account an external field and the effects of twist. Increasing the magnitude of the external field tends to lower the summit height of the tube. It is found that non-equilibrium sets in if the footpoints are separated more than a certain critical width, which does not depend on the magnitude of the external field. It is found that two possible equilibrium heights can exist for a twisted tube; however, if the tube is twisted too far, or if the footpoints are moved apart, non-equilibrium can set in. The critical width at which non-equilibrium occurs is lower for a twisted tube than for an untwisted one. This is suggested as an explanation for the rise of a filament prior to a two ribbon flare, and as a mechanism for coronal transients.
An alternative description of the coronal magnetic field is given, using a perturbation expansion for an almost potential field, with small pressure gradients. The field is assumed to be line-tied at the photospheric base.
Then the equilibrium properties of the global magnetic field of a star are investigated. A linear and non-linear family of solutions to the magnetostatic equilibrium equation are found. The linear solutions are used to investigate the twisting up of force-free dipolar and quadrupolar fields, including in a simple manner the effects of a stellar wind. In both cases, it was found that the field becomes physically unreasonable if it is twisted too far, with field lines detached from the star being formed, which would be pulled out by the stellar wind. Thus, if the field is twisted more than a critical amount, non-equilibrium sets in and some catastrophic behaviour takes place. This is suggested as a possible mechanism for stellar flares. Similar results are found in a study of the effects of increasing the pressure gradients at the stellar surface of a magnetostatic dipole-like field. The linear solutions are also used to study the equilibrium of a finite magnetosphere, and multiple equilibria are found.
Finally, one aspect of the propagation of waves in an inhomogeneous magnetic field is studied, with particular reference to the problem of heating the solar corona. The mechanism of phase-mixing, which provides a means of dissipating shear Alfven waves that propagate in an inhomogeneous magnetic field, is investigated. The onset of Kelvin-Helmholtz instability, which could disrupt the wave and thus enhance the dissipation, is studied. First, the dispersion relation of the instability is calculated for the case of fully developed phase-mixing. Then, the onset of the instability is investigated, to find out whether the instability can grow before the phase-mixing is fully developed. It is found that instability can set in after only a very few wave periods. It is suggested that the instability triggers off a turbulent cascade which dissipates the wave energy. The heating rates that could be produced by such a process are calculated, and are found to be more than adequate for coronal heating.
1984-01-01T00:00:00ZBrowning, PhilippaThe magnetic field in the solar atmosphere is highly inhomogeneous. In the photosphere, the field is concentrated into intense flux tubes and the coronal magnetic field consists of many loops and regions of open field. This thesis investigates some of the basic properties of inhomogeneous solar magnetic fields.
First of all, the equilibrium properties of untwisted flux tubes, confined by a spatially varying external pressure distribution, are investigated. The behaviour of thick flux tubes, including the effects of a transverse field component and a variation in the field across the tube, is compared with slender flux tube theory. It is shown that slender tube theory is accurate for tubes which are approximately slender, but that completely misleading results can be obtained by applying slender tube theory if the pressure distribution is not slowly varying.
Twisted flux tubes are then studied, with the aim of finding how twisting affects a tube confined by an inhomogeneous pressure distribution. It is shown that, in general, a tube expands as it is twisted; this is illustrated both by extensions to slender tube theory and by some exact analytical solutions. A family of linear solutions is used to model the evolution of a finite tube confined by a falling external pressure. It is shown that, if the confining pressure falls too low, the tube may burst, with some dynamic process ensuing.
The equilibrium properties of a flux tube with a curved axis are then investigated, with the main aim of modelling coronal loops. Previous theory for the equilibrium of a curved slender flux tube in a gravitationally stratified atmosphere, with a balance between magnetic buoyancy and tension forces, is extended to take into account an external field and the effects of twist. Increasing the magnitude of the external field tends to lower the summit height of the tube. It is found that non-equilibrium sets in if the footpoints are separated more than a certain critical width, which does not depend on the magnitude of the external field. It is found that two possible equilibrium heights can exist for a twisted tube; however, if the tube is twisted too far, or if the footpoints are moved apart, non-equilibrium can set in. The critical width at which non-equilibrium occurs is lower for a twisted tube than for an untwisted one. This is suggested as an explanation for the rise of a filament prior to a two ribbon flare, and as a mechanism for coronal transients.
An alternative description of the coronal magnetic field is given, using a perturbation expansion for an almost potential field, with small pressure gradients. The field is assumed to be line-tied at the photospheric base.
Then the equilibrium properties of the global magnetic field of a star are investigated. A linear and non-linear family of solutions to the magnetostatic equilibrium equation are found. The linear solutions are used to investigate the twisting up of force-free dipolar and quadrupolar fields, including in a simple manner the effects of a stellar wind. In both cases, it was found that the field becomes physically unreasonable if it is twisted too far, with field lines detached from the star being formed, which would be pulled out by the stellar wind. Thus, if the field is twisted more than a critical amount, non-equilibrium sets in and some catastrophic behaviour takes place. This is suggested as a possible mechanism for stellar flares. Similar results are found in a study of the effects of increasing the pressure gradients at the stellar surface of a magnetostatic dipole-like field. The linear solutions are also used to study the equilibrium of a finite magnetosphere, and multiple equilibria are found.
Finally, one aspect of the propagation of waves in an inhomogeneous magnetic field is studied, with particular reference to the problem of heating the solar corona. The mechanism of phase-mixing, which provides a means of dissipating shear Alfven waves that propagate in an inhomogeneous magnetic field, is investigated. The onset of Kelvin-Helmholtz instability, which could disrupt the wave and thus enhance the dissipation, is studied. First, the dispersion relation of the instability is calculated for the case of fully developed phase-mixing. Then, the onset of the instability is investigated, to find out whether the instability can grow before the phase-mixing is fully developed. It is found that instability can set in after only a very few wave periods. It is suggested that the instability triggers off a turbulent cascade which dissipates the wave energy. The heating rates that could be produced by such a process are calculated, and are found to be more than adequate for coronal heating.The structure, stability and interaction of geophysical vorticesPłotka, Hannahttps://hdl.handle.net/10023/37292019-04-01T08:33:31Z2013-06-28T00:00:00ZThis thesis examines the structure, stability and interaction of geophysical vortices. We do so by restricting our attention to relative vortex equilibria, or states which appear stationary in a co-rotating frame of reference. We approach the problem from three different perspectives, namely by first studying the single-vortex, quasi-geostrophic shallow-water problem, next by generalising it to an (asymmetric) two-vortex problem, and finally by re-visiting the single-vortex problem, making use of the more realistic, although more complicated, shallow-water model.
We find that in all of the systems studied, small vortices (compared to the Rossby deformation length) are more likely to be unstable than large ones. For the single-vortex problem, this means that large vortices can sustain much greater deformations before destabilising than small vortices, and for the two-vortex problem this means that vortices are able to come closer together before destabilising. Additionally, we find that for large vortices, the degree of asymmetry of a vortex pair does not affect its stability, although it does affect the underlying steady state into which an unstable state transitions. Lastly, by carefully defining the "equivalence" between cyclones and anticyclones which appear in the shallow-water system, we find that cyclones are more stable than anticyclones. This is contrary to what is generally reported in the literature.
2013-06-28T00:00:00ZPłotka, HannaThis thesis examines the structure, stability and interaction of geophysical vortices. We do so by restricting our attention to relative vortex equilibria, or states which appear stationary in a co-rotating frame of reference. We approach the problem from three different perspectives, namely by first studying the single-vortex, quasi-geostrophic shallow-water problem, next by generalising it to an (asymmetric) two-vortex problem, and finally by re-visiting the single-vortex problem, making use of the more realistic, although more complicated, shallow-water model.
We find that in all of the systems studied, small vortices (compared to the Rossby deformation length) are more likely to be unstable than large ones. For the single-vortex problem, this means that large vortices can sustain much greater deformations before destabilising than small vortices, and for the two-vortex problem this means that vortices are able to come closer together before destabilising. Additionally, we find that for large vortices, the degree of asymmetry of a vortex pair does not affect its stability, although it does affect the underlying steady state into which an unstable state transitions. Lastly, by carefully defining the "equivalence" between cyclones and anticyclones which appear in the shallow-water system, we find that cyclones are more stable than anticyclones. This is contrary to what is generally reported in the literature.Two-dimensional magnetohydrodynamic turbulence in the small magnetic Prandtl number limitDritschel, David GerardTobias, Stevehttps://hdl.handle.net/10023/36982022-04-14T15:30:43Z2012-07-01T00:00:00ZIn this paper we introduce a new method for computations of two-dimensional magnetohydrodynamic (MHD) turbulence at low magnetic Prandtl number $\Pra=\nu/\eta$. When $\Pra \ll 1$, the magnetic field dissipates at a scale much larger than the velocity field. The method we utilise is a novel hybrid contour--spectral method, the ``Combined Lagrangian Advection Method'', formally to integrate the equations with zero viscous dissipation. The method is compared with a standard pseudo-spectral method for decreasing $\Pra$ for the problem of decaying two-dimensional MHD turbulence. The method is shown to agree well for a wide range of imposed magnetic field strengths. Examples of problems for which such a method may prove invaluable are also given.
2012-07-01T00:00:00ZDritschel, David GerardTobias, SteveIn this paper we introduce a new method for computations of two-dimensional magnetohydrodynamic (MHD) turbulence at low magnetic Prandtl number $\Pra=\nu/\eta$. When $\Pra \ll 1$, the magnetic field dissipates at a scale much larger than the velocity field. The method we utilise is a novel hybrid contour--spectral method, the ``Combined Lagrangian Advection Method'', formally to integrate the equations with zero viscous dissipation. The method is compared with a standard pseudo-spectral method for decreasing $\Pra$ for the problem of decaying two-dimensional MHD turbulence. The method is shown to agree well for a wide range of imposed magnetic field strengths. Examples of problems for which such a method may prove invaluable are also given.Equilibrium and stability properties of collisionless current sheet modelsWilson, Fionahttps://hdl.handle.net/10023/35482019-07-01T10:05:03Z2013-06-28T00:00:00ZThe work in this thesis focuses primarily on equilibrium and stability properties of collisionless current sheet models, in particular of the force-free Harris sheet model.
A detailed investigation is carried out into the properties of the distribution function found by Harrison and Neukirch (Physical Review Letters 102, 135003, 2009) for the force-free Harris sheet, which is so far the only known nonlinear force-free Vlasov-Maxwell equilibrium. Exact conditions on the parameters of the distribution function are found, which show when it can be single or multi-peaked in two of the velocity space directions. This is important because it may have implications for the stability of the equilibrium.
One major aim of this thesis is to find new force-free equilibrium distribution functions. By using a new method which is different from that of Harrison and Neukirch, it is possible to find a complete family of distribution functions for the force-free Harris sheet, which includes the Harrison and Neukirch distribution function (Physical Review Letters 102, 135003, 2009). Each member of this family has a different dependence on the particle energy, although the dependence on the canonical momenta remains the same. Three detailed analytical examples are presented. Other possibilities for finding further collisionless force-free equilibrium distribution functions have been explored, but were unsuccessful.
The first linear stability analysis of the Harrison and Neukirch equilibrium distribution function is then carried out, concentrating on macroscopic instabilities, and considering two-dimensional perturbations only. The analysis is based on the technique of integration over unperturbed orbits. Similarly to the Harris sheet case (Nuovo Cimento, 23:115, 1962), this is only possible by using approximations to the exact orbits, which are unknown. Furthermore, the approximations for the Harris sheet case cannot be used for the force-free Harris sheet, and so new techniques have to be developed in order to make analytical progress. Full analytical expressions for the perturbed current density are derived but, for the sake of simplicity, only the long wavelength limit is investigated. The dependence of the stability on various equilibrium parameters is investigated.
2013-06-28T00:00:00ZWilson, FionaThe work in this thesis focuses primarily on equilibrium and stability properties of collisionless current sheet models, in particular of the force-free Harris sheet model.
A detailed investigation is carried out into the properties of the distribution function found by Harrison and Neukirch (Physical Review Letters 102, 135003, 2009) for the force-free Harris sheet, which is so far the only known nonlinear force-free Vlasov-Maxwell equilibrium. Exact conditions on the parameters of the distribution function are found, which show when it can be single or multi-peaked in two of the velocity space directions. This is important because it may have implications for the stability of the equilibrium.
One major aim of this thesis is to find new force-free equilibrium distribution functions. By using a new method which is different from that of Harrison and Neukirch, it is possible to find a complete family of distribution functions for the force-free Harris sheet, which includes the Harrison and Neukirch distribution function (Physical Review Letters 102, 135003, 2009). Each member of this family has a different dependence on the particle energy, although the dependence on the canonical momenta remains the same. Three detailed analytical examples are presented. Other possibilities for finding further collisionless force-free equilibrium distribution functions have been explored, but were unsuccessful.
The first linear stability analysis of the Harrison and Neukirch equilibrium distribution function is then carried out, concentrating on macroscopic instabilities, and considering two-dimensional perturbations only. The analysis is based on the technique of integration over unperturbed orbits. Similarly to the Harris sheet case (Nuovo Cimento, 23:115, 1962), this is only possible by using approximations to the exact orbits, which are unknown. Furthermore, the approximations for the Harris sheet case cannot be used for the force-free Harris sheet, and so new techniques have to be developed in order to make analytical progress. Full analytical expressions for the perturbed current density are derived but, for the sake of simplicity, only the long wavelength limit is investigated. The dependence of the stability on various equilibrium parameters is investigated.Instability in internal solitary waves with trapped coresCarr, MagdaKing, Stuart EdwardDritschel, David Gerardhttps://hdl.handle.net/10023/33972023-04-18T09:44:51Z2012-01-01T00:00:00ZA numerical method that employs a combination of contour advection and pseudo-spectral techniques is used to investigate instability in internal solitary waves with trapped cores. A three-layer configuration for the background stratification in which the top two layers are linearly stratified and the lower layer is homogeneous is considered throughout. The strength of the stratification in the very top layer is chosen to be sufficient so that waves of depression with trapped cores can be generated. The flow is assumed to satisfy the Dubriel-Jacotin-Long equation both inside and outside of the core region. The Brunt-Vaisala frequency is modelled such that it varies from a constant value outside of the core to zero inside the core over a sharp but continuous transition length. This results in a stagnant core in which the vorticity is zero and the density is homogeneous and approximately equal to that at the core boundary. The time dependent simulations show that instability occurs on the boundary of the core. The instability takes the form of Kelvin-Helmholtz billows. If the instability in the vorticity field is energetic enough, disturbance in the buoyancy field is also seen and fluid exchange takes place across the core boundary. Occurrence of the Kelvin-Helmholtz billows is attributed to the sharp change in the vorticity field at the boundary between the core and the pycnocline. The numerical scheme is not limited by small Richardson number unlike the other alternatives currently available in the literature which appear to be.
2012-01-01T00:00:00ZCarr, MagdaKing, Stuart EdwardDritschel, David GerardA numerical method that employs a combination of contour advection and pseudo-spectral techniques is used to investigate instability in internal solitary waves with trapped cores. A three-layer configuration for the background stratification in which the top two layers are linearly stratified and the lower layer is homogeneous is considered throughout. The strength of the stratification in the very top layer is chosen to be sufficient so that waves of depression with trapped cores can be generated. The flow is assumed to satisfy the Dubriel-Jacotin-Long equation both inside and outside of the core region. The Brunt-Vaisala frequency is modelled such that it varies from a constant value outside of the core to zero inside the core over a sharp but continuous transition length. This results in a stagnant core in which the vorticity is zero and the density is homogeneous and approximately equal to that at the core boundary. The time dependent simulations show that instability occurs on the boundary of the core. The instability takes the form of Kelvin-Helmholtz billows. If the instability in the vorticity field is energetic enough, disturbance in the buoyancy field is also seen and fluid exchange takes place across the core boundary. Occurrence of the Kelvin-Helmholtz billows is attributed to the sharp change in the vorticity field at the boundary between the core and the pycnocline. The numerical scheme is not limited by small Richardson number unlike the other alternatives currently available in the literature which appear to be.Finite and infinite ergodic theory for linear and conformal dynamical systemsMunday, Sarahttps://hdl.handle.net/10023/32202019-04-01T08:33:41Z2011-11-30T00:00:00ZThe first main topic of this thesis is the thorough analysis of two families of piecewise linear
maps on the unit interval, the α-Lüroth and α-Farey maps. Here, α denotes a countably infinite
partition of the unit interval whose atoms only accumulate at the origin. The basic properties
of these maps will be developed, including that each α-Lüroth map (denoted Lα) gives rise to a
series expansion of real numbers in [0,1], a certain type of Generalised Lüroth Series. The first
example of such an expansion was given by Lüroth. The map Lα is the jump transformation
of the corresponding α-Farey map Fα. The maps Lα and Fα share the same relationship as the
classical Farey and Gauss maps which give rise to the continued fraction expansion of a real
number. We also consider the topological properties of Fα and some Diophantine-type sets of
numbers expressed in terms of the α-Lüroth expansion.
Next we investigate certain ergodic-theoretic properties of the maps Lα and Fα. It will turn
out that the Lebesgue measure λ is invariant for every map Lα and that there exists a unique
Lebesgue-absolutely continuous invariant measure for Fα. We will give a precise expression for
the density of this measure. Our main result is that both Lα and Fα are exact, and thus ergodic.
The interest in the invariant measure for Fα lies in the fact that under a particular condition on
the underlying partition α, the invariant measure associated to the map Fα is infinite.
Then we proceed to introduce and examine the sequence of α-sum-level sets arising from
the α-Lüroth map, for an arbitrary given partition α. These sets can be written dynamically in
terms of Fα. The main result concerning the α-sum-level sets is to establish weak and strong
renewal laws. Note that for the Farey map and the Gauss map, the analogue of this result has
been obtained by Kesseböhmer and Stratmann. There the results were derived by using advanced
infinite ergodic theory, rather than the strong renewal theorems employed here. This underlines
the fact that one of the main ingredients of infinite ergodic theory is provided by some delicate
estimates in renewal theory.
Our final main result concerning the α-Lüroth and α-Farey systems is to provide a fractal-geometric
description of the Lyapunov spectra associated with each of the maps Lα and Fα.
The Lyapunov spectra for the Farey map and the Gauss map have been investigated in detail by
Kesseböhmer and Stratmann. The Farey map and the Gauss map are non-linear, whereas the
systems we consider are always piecewise linear. However, since our analysis is based on a large
family of different partitions of U , the class of maps which we consider in this paper allows us
to detect a variety of interesting new phenomena, including that of phase transitions.
Finally, we come to the conformal systems of the title. These are the limit sets of discrete
subgroups of the group of isometries of the hyperbolic plane. For these so-called Fuchsian
groups, our first main result is to establish the Hausdorff dimension of some Diophantine-type
sets contained in the limit set that are similar to those considered for the maps Lα. These sets
are then used in our second main result to analyse the more geometrically defined strict-Jarník
limit set of a Fuchsian group. Finally, we obtain a “weak multifractal spectrum” for the Patterson
measure associated to the Fuchsian group.
2011-11-30T00:00:00ZMunday, SaraThe first main topic of this thesis is the thorough analysis of two families of piecewise linear
maps on the unit interval, the α-Lüroth and α-Farey maps. Here, α denotes a countably infinite
partition of the unit interval whose atoms only accumulate at the origin. The basic properties
of these maps will be developed, including that each α-Lüroth map (denoted Lα) gives rise to a
series expansion of real numbers in [0,1], a certain type of Generalised Lüroth Series. The first
example of such an expansion was given by Lüroth. The map Lα is the jump transformation
of the corresponding α-Farey map Fα. The maps Lα and Fα share the same relationship as the
classical Farey and Gauss maps which give rise to the continued fraction expansion of a real
number. We also consider the topological properties of Fα and some Diophantine-type sets of
numbers expressed in terms of the α-Lüroth expansion.
Next we investigate certain ergodic-theoretic properties of the maps Lα and Fα. It will turn
out that the Lebesgue measure λ is invariant for every map Lα and that there exists a unique
Lebesgue-absolutely continuous invariant measure for Fα. We will give a precise expression for
the density of this measure. Our main result is that both Lα and Fα are exact, and thus ergodic.
The interest in the invariant measure for Fα lies in the fact that under a particular condition on
the underlying partition α, the invariant measure associated to the map Fα is infinite.
Then we proceed to introduce and examine the sequence of α-sum-level sets arising from
the α-Lüroth map, for an arbitrary given partition α. These sets can be written dynamically in
terms of Fα. The main result concerning the α-sum-level sets is to establish weak and strong
renewal laws. Note that for the Farey map and the Gauss map, the analogue of this result has
been obtained by Kesseböhmer and Stratmann. There the results were derived by using advanced
infinite ergodic theory, rather than the strong renewal theorems employed here. This underlines
the fact that one of the main ingredients of infinite ergodic theory is provided by some delicate
estimates in renewal theory.
Our final main result concerning the α-Lüroth and α-Farey systems is to provide a fractal-geometric
description of the Lyapunov spectra associated with each of the maps Lα and Fα.
The Lyapunov spectra for the Farey map and the Gauss map have been investigated in detail by
Kesseböhmer and Stratmann. The Farey map and the Gauss map are non-linear, whereas the
systems we consider are always piecewise linear. However, since our analysis is based on a large
family of different partitions of U , the class of maps which we consider in this paper allows us
to detect a variety of interesting new phenomena, including that of phase transitions.
Finally, we come to the conformal systems of the title. These are the limit sets of discrete
subgroups of the group of isometries of the hyperbolic plane. For these so-called Fuchsian
groups, our first main result is to establish the Hausdorff dimension of some Diophantine-type
sets contained in the limit set that are similar to those considered for the maps Lα. These sets
are then used in our second main result to analyse the more geometrically defined strict-Jarník
limit set of a Fuchsian group. Finally, we obtain a “weak multifractal spectrum” for the Patterson
measure associated to the Fuchsian group.The propagation and damping of slow magnetoacoustic waves in the solar atmosphereOwen, Nicholas Roberthttps://hdl.handle.net/10023/32152019-04-01T08:33:27Z2012-11-30T00:00:00ZThe propagation and damping of slow magnetoacoustic waves in the solar atmosphere is investigated, with
particular emphasis placed on waves with periodicities of five minutes. The basic model of a uniform
temperature loop is extended by the addition of an equilibrium temperature gradient allowing study of
wave propagation from the transition region to the corona. The inclusion of thermal conduction produces
a phase shift between the perturbations in velocity, density and temperature, which for a non-uniform
equilibrium temperature varies along the loop and may be observable as a phase shift between intensity and
Doppler shift observations. Forward modelling of the simulation results, for both constant and non-constant
equilibrium temperature profiles, is undertaken in order to establish the observational consequences for
TRACE, SoHO/CDS and Hinode/EIS. Slow waves propagating in a non-uniform equilibrium temperature
loop are seen to damp rapidly in the corona, however, as a result of the ionisation balance, the inclusion of
damping can actually increase the amplitude of some parts of the oscillation.
The ability of several data analysis techniques to identify oscillation signatures are examined. In particular,
empirical mode decomposition was found to be a very useful technique for extracting oscillations from a
wide range of data sets and is capable of intrinsically determining background trends. Co-spatial and cotemporal
TRACE 171 A, CDS and EIS data are analysed for evidence of propagating slow waves. Slow
waves with periods of 210 s to 370 s are found with amplitudes of 1.2% to 3.4% in the corona and 2.3% to
6.0% in the transition region.
2012-11-30T00:00:00ZOwen, Nicholas RobertThe propagation and damping of slow magnetoacoustic waves in the solar atmosphere is investigated, with
particular emphasis placed on waves with periodicities of five minutes. The basic model of a uniform
temperature loop is extended by the addition of an equilibrium temperature gradient allowing study of
wave propagation from the transition region to the corona. The inclusion of thermal conduction produces
a phase shift between the perturbations in velocity, density and temperature, which for a non-uniform
equilibrium temperature varies along the loop and may be observable as a phase shift between intensity and
Doppler shift observations. Forward modelling of the simulation results, for both constant and non-constant
equilibrium temperature profiles, is undertaken in order to establish the observational consequences for
TRACE, SoHO/CDS and Hinode/EIS. Slow waves propagating in a non-uniform equilibrium temperature
loop are seen to damp rapidly in the corona, however, as a result of the ionisation balance, the inclusion of
damping can actually increase the amplitude of some parts of the oscillation.
The ability of several data analysis techniques to identify oscillation signatures are examined. In particular,
empirical mode decomposition was found to be a very useful technique for extracting oscillations from a
wide range of data sets and is capable of intrinsically determining background trends. Co-spatial and cotemporal
TRACE 171 A, CDS and EIS data are analysed for evidence of propagating slow waves. Slow
waves with periods of 210 s to 370 s are found with amplitudes of 1.2% to 3.4% in the corona and 2.3% to
6.0% in the transition region.Wave propagation, phase mixing and dissipation in Hall MHDThrelfall, James W.https://hdl.handle.net/10023/31822019-07-01T10:18:43Z2012-06-22T00:00:00ZIn this thesis the effect of the Hall term in the generalised Ohm’s law on Alfvén (shear) and fast wave propagation and dissipation in the ion cyclotron frequency range is investigated.
The damping of an initially Gaussian field perturbation in a uniform Hall MHD plasma is treated analytically. Subsequently a 2D Lagrangian remap code (Lare2d) is used to study the damping and phase mixing of initially Gaussian field perturbations and a harmonic series of boundary-driven perturbations in a uniform field (in the presence of a transverse equilibrium density gradient). The same code is then used to study a range of initially shear and fast-wave perturbations in the vicinity of a magnetic X-type null point.
The magnetic energy associated with an initially Gaussian field perturbation in a uniform resistive plasma is shown to decay algebraically at a rate that is unaffected by the Hall term to leading order in kδ where k is wavenumber and δ is ion skin depth. A similar decay law applies to whistler perturbations in the limit kδ>>>1.
We demonstrate that in both geometries considered, the inclusion of the Hall term reduces the effectiveness of phase-mixing in plasma heating. The reduction in the damping rate in the uniform ﬁeld (non-uniform density) cases, arising from dispersive effects, tends to zero in both the weak and strong phase mixing limits. In the Hall MHD X-point case, minimal reductions are seen for initially shear wave pulses, suggesting that little or no phase-mixing takes place. Nonlinear fast wave pulses which interact with the initial X-point destabilise the local field sufficiently to generate multiple null pairs; subsequent oscillatory current sheet behaviour appears unaffected by earlier differences between the MHD and Hall MHD cases.
2012-06-22T00:00:00ZThrelfall, James W.In this thesis the effect of the Hall term in the generalised Ohm’s law on Alfvén (shear) and fast wave propagation and dissipation in the ion cyclotron frequency range is investigated.
The damping of an initially Gaussian field perturbation in a uniform Hall MHD plasma is treated analytically. Subsequently a 2D Lagrangian remap code (Lare2d) is used to study the damping and phase mixing of initially Gaussian field perturbations and a harmonic series of boundary-driven perturbations in a uniform field (in the presence of a transverse equilibrium density gradient). The same code is then used to study a range of initially shear and fast-wave perturbations in the vicinity of a magnetic X-type null point.
The magnetic energy associated with an initially Gaussian field perturbation in a uniform resistive plasma is shown to decay algebraically at a rate that is unaffected by the Hall term to leading order in kδ where k is wavenumber and δ is ion skin depth. A similar decay law applies to whistler perturbations in the limit kδ>>>1.
We demonstrate that in both geometries considered, the inclusion of the Hall term reduces the effectiveness of phase-mixing in plasma heating. The reduction in the damping rate in the uniform ﬁeld (non-uniform density) cases, arising from dispersive effects, tends to zero in both the weak and strong phase mixing limits. In the Hall MHD X-point case, minimal reductions are seen for initially shear wave pulses, suggesting that little or no phase-mixing takes place. Nonlinear fast wave pulses which interact with the initial X-point destabilise the local field sufficiently to generate multiple null pairs; subsequent oscillatory current sheet behaviour appears unaffected by earlier differences between the MHD and Hall MHD cases.A non-linear force-free field model for the solar magnetic carpetMeyer, Karen Alisonhttps://hdl.handle.net/10023/31142019-04-01T08:33:20Z2012-06-22T00:00:00ZThe magnetic carpet is defined to be the small-scale photospheric magnetic field of the quiet Sun. Observations of the magnetic carpet show it to be highly dynamic, where the time taken for all flux within the magnetic carpet to be replaced is on the order of just a few hours. The magnetic carpet is continually evolving due to the Sun's underlying convection and the interaction of small-scale magnetic features with one another. Due to this, the small-scale coronal field of the magnetic carpet is also expected to be highly dynamic and complex. Previous modelling has shown that much of the flux from the magnetic carpet is stored along low-lying closed connections between magnetic features. This indicates that significant coronal heating could occur low down in the small-scale corona. In this thesis, a new two-component magnetic field model is developed for the evolution of the magnetic carpet. A 2D model is constructed to realistically simulate the evolution of the photospheric field of the magnetic carpet, where many of the parameters for the model are taken from observational studies. The photospheric model contains a granular and supergranular flow profile to describe the motion of the small-scale magnetic features, and includes the processes of flux emergence, cancellation, coalescence and fragmentation. This 2D model then couples to a 3D model as the lower boundary condition, which drives the evolution of the coronal field through a series of non-linear force-free states, via a magnetofrictional relaxation technique. We first apply the magnetofrictional technique to consider the coronal evolution of three basic small-scale photospheric processes: emergence, cancellation and flyby. We consider the interaction of the magnetic features with an overlying coronal magnetic field, and quantify magnetic energy build-up, storage and dissipation. The magnetofrictional technique is then applied to synthetic magnetograms produced from the 2D model, to simulate the evolution of the coronal field in a situation involving many hundreds of magnetic features. We conduct a preliminary analysis of the resultant 3D simulations, considering the magnetic energy stored and dissipated, as well as regions of enhanced velocity and electric current density within the coronal volume. The simulations show that the so-called 'quiet Sun' is not quiet and a significant amount of complex interactions take place.
2012-06-22T00:00:00ZMeyer, Karen AlisonThe magnetic carpet is defined to be the small-scale photospheric magnetic field of the quiet Sun. Observations of the magnetic carpet show it to be highly dynamic, where the time taken for all flux within the magnetic carpet to be replaced is on the order of just a few hours. The magnetic carpet is continually evolving due to the Sun's underlying convection and the interaction of small-scale magnetic features with one another. Due to this, the small-scale coronal field of the magnetic carpet is also expected to be highly dynamic and complex. Previous modelling has shown that much of the flux from the magnetic carpet is stored along low-lying closed connections between magnetic features. This indicates that significant coronal heating could occur low down in the small-scale corona. In this thesis, a new two-component magnetic field model is developed for the evolution of the magnetic carpet. A 2D model is constructed to realistically simulate the evolution of the photospheric field of the magnetic carpet, where many of the parameters for the model are taken from observational studies. The photospheric model contains a granular and supergranular flow profile to describe the motion of the small-scale magnetic features, and includes the processes of flux emergence, cancellation, coalescence and fragmentation. This 2D model then couples to a 3D model as the lower boundary condition, which drives the evolution of the coronal field through a series of non-linear force-free states, via a magnetofrictional relaxation technique. We first apply the magnetofrictional technique to consider the coronal evolution of three basic small-scale photospheric processes: emergence, cancellation and flyby. We consider the interaction of the magnetic features with an overlying coronal magnetic field, and quantify magnetic energy build-up, storage and dissipation. The magnetofrictional technique is then applied to synthetic magnetograms produced from the 2D model, to simulate the evolution of the coronal field in a situation involving many hundreds of magnetic features. We conduct a preliminary analysis of the resultant 3D simulations, considering the magnetic energy stored and dissipated, as well as regions of enhanced velocity and electric current density within the coronal volume. The simulations show that the so-called 'quiet Sun' is not quiet and a significant amount of complex interactions take place.A highly adaptive three dimensional hybrid vortex method for inviscid flows and helically symmetric vortex equilibriaLucas, Danielhttps://hdl.handle.net/10023/30912019-07-01T10:08:26Z2012-06-22T00:00:00ZThis thesis is concerned with three-dimensional vortex dynamics, in particular the modelling of vortex structures in an inviscid context. We are motivated by the open problem of regularity of the inviscid equations, i.e. whether or not these equations possess solutions. This problem is manifest in small scales, where vortex filaments are stretched and intensify as they are drawn into increasingly thin tendrils. This creates great difficulty in the investigation of such flows. Our only means of experimentation is to perform numerical simulations, which require exceptionally high resolution to capture the small scale vortex structures.
A new numerical method to solve the inviscid Euler equations for three-dimensional, incompressible fluids is presented, with special emphasis on spatial adaptivity to resolve as broad a range of scales as possible in a completely self-similar fashion. We present a hybrid vortex method whereby we discretise the vorticity in Lagrangian filaments and perform and inversion to compute velocity on an arbitrary unstructured finite-volume grid. This allows for a two-fold adaptivity strategy. First, although naturally spatially adaptive by definition, the vorticity filaments undergo ‘renoding’. We redistribute nodes along the filament to concentrate their density in regions of high curvature. Secondly the Eulerian mesh is adapted to follow high strain by increasing resolution based on local filament dimensions. These features allow vortex stretching and folding to be resolved in a completely automatic and self-similar way. The method is validated via well known vortex rings and newly discovered helical vortex equilibria are also used to test the method.
We begin by presenting this new class of three-dimensional vortex equilibria which possess helical symmetry. Such vortices are observed in propeller and wind turbine wakes, and their equilibria shapes have until now been unknown. These vortices are described by contours bounding regions of uniform axial vorticity. Material conservation of axial vorticity enables equilibria to be calculated simply by a restriction on the helical stream function. The states are parameterised by their mean radius and centroid position. In the case of a single vortex, the parameter space cannot be fully filled by our numerical approach. We conjecture that multiply connected contours will characterise equilibria where the algorithm fails. We also consider multiple vortices, evenly azimuthally spaced about the origin. In such cases instabilities often lead to a single helical vortex.
2012-06-22T00:00:00ZLucas, DanielThis thesis is concerned with three-dimensional vortex dynamics, in particular the modelling of vortex structures in an inviscid context. We are motivated by the open problem of regularity of the inviscid equations, i.e. whether or not these equations possess solutions. This problem is manifest in small scales, where vortex filaments are stretched and intensify as they are drawn into increasingly thin tendrils. This creates great difficulty in the investigation of such flows. Our only means of experimentation is to perform numerical simulations, which require exceptionally high resolution to capture the small scale vortex structures.
A new numerical method to solve the inviscid Euler equations for three-dimensional, incompressible fluids is presented, with special emphasis on spatial adaptivity to resolve as broad a range of scales as possible in a completely self-similar fashion. We present a hybrid vortex method whereby we discretise the vorticity in Lagrangian filaments and perform and inversion to compute velocity on an arbitrary unstructured finite-volume grid. This allows for a two-fold adaptivity strategy. First, although naturally spatially adaptive by definition, the vorticity filaments undergo ‘renoding’. We redistribute nodes along the filament to concentrate their density in regions of high curvature. Secondly the Eulerian mesh is adapted to follow high strain by increasing resolution based on local filament dimensions. These features allow vortex stretching and folding to be resolved in a completely automatic and self-similar way. The method is validated via well known vortex rings and newly discovered helical vortex equilibria are also used to test the method.
We begin by presenting this new class of three-dimensional vortex equilibria which possess helical symmetry. Such vortices are observed in propeller and wind turbine wakes, and their equilibria shapes have until now been unknown. These vortices are described by contours bounding regions of uniform axial vorticity. Material conservation of axial vorticity enables equilibria to be calculated simply by a restriction on the helical stream function. The states are parameterised by their mean radius and centroid position. In the case of a single vortex, the parameter space cannot be fully filled by our numerical approach. We conjecture that multiply connected contours will characterise equilibria where the algorithm fails. We also consider multiple vortices, evenly azimuthally spaced about the origin. In such cases instabilities often lead to a single helical vortex.Continued fractions which correspond to two series expansions and the strong Hamburger moment problemSri Ranga, A.https://hdl.handle.net/10023/29772019-04-01T08:33:23Z1984-01-01T00:00:00ZJust as the denominator polynomials of a J-fraction are
orthogonal polynomials with respect to some moment functional, the
denominator polynomials of an M-fraction are shown to satisfy a skew
orthogonality relation with respect to a stronger moment functional.
Many of the properties of the numerators and denominators of an M-
fraction are also studied using this pseudo orthogonality relation
of the denominator polynomials. Properties of the zeros of the
denominator polynomials when the associated moment functional is
positive definite are also considered.
A type of continued fraction, referred to as a J-fraction, is
shown to correspond to a power series about the origin and to another
power series about infinity such that the successive convergents of
this fraction include two more additional terms of anyone of the
power series. Given the power series expansions, a method of
obtaining such a J-fraction, whenever it exists, is also looked at.
The first complete proof of the so called strong Hamburger moment
problem using a continued fraction is given. In this case the
continued fraction is a J-fraction.
Finally a special class of J-fraction, referred to as positive
definite J-fractions, is studied in detail.
The four chapters of this thesis are divided into sections.
Each section is given a section number which is made up of the
chapter number followed by the number of the section within the
chapter. The equations in the thesis have an equation number
consisting of the section number followed by the number of the
equation within that section.
In Chapter One, in addition to looking at some of the
historical and recent developments of corresponding continued
fractions and their applications, we also present some preliminaries.
Chapter Two deals with a different approach of understanding
the properties of the numerators and denominators of corresponding
(two point) rational functions and, continued fractions. This
approach, which is based on a pseudo orthogonality relation of the
denominator polynomials of the corresponding rational functions,
provides an insight into understanding the moment problems. In
particular, results are established which suggest a possible type
of continued fraction for solving the strong Hamburger moment
problem.
In the third chapter we study in detail the existence
conditions and corresponding properties of this new type of continued
fraction, which we call J-fractions. A method of derivation of one
of these 3-fractions is also considered. In the same chapter we also
look at the all important application of solving the strong Hamburger
moment problem, using these 3-fractions.
The fourth and final chapter is devoted entirely to the study
of the convergence behaviour of a certain class of J-fractions,
namely positive definite J-fractions. This study also provides some
interesting convergence criteria for a real and regular 3-fraction.
Finally a word concerning the literature on continued fractions
and moment problems. The more recent and up-to-date exposition on
the analytic theory of continued fractions and their applications is
the text of Jones and Thron [1980]. The two volumes of Baker and
Graves-Morris [1981] provide a very good treatment on one of the
computational aspects of the continued fractions, namely Pade
approximants. There are also the earlier texts of Wall [1948] and
Khovanskii [1963], in which the former gives an extensive insight
into the analytic theory of continued fractions while the latter,
being simpler, remains the ideal book for the beginner. In his
treatise on Applied and Computational Complex Analysis, Henrici
[1977] has also included an excellent chapter on continued fractions.
Wall [1948] also includes a few chapters on moment problems and
related areas. A much wider treatment of the classical moment
problems is provided in the excellent texts of Shohat and Tamarkin
[1943] and Akhieser [1965].
1984-01-01T00:00:00ZSri Ranga, A.Just as the denominator polynomials of a J-fraction are
orthogonal polynomials with respect to some moment functional, the
denominator polynomials of an M-fraction are shown to satisfy a skew
orthogonality relation with respect to a stronger moment functional.
Many of the properties of the numerators and denominators of an M-
fraction are also studied using this pseudo orthogonality relation
of the denominator polynomials. Properties of the zeros of the
denominator polynomials when the associated moment functional is
positive definite are also considered.
A type of continued fraction, referred to as a J-fraction, is
shown to correspond to a power series about the origin and to another
power series about infinity such that the successive convergents of
this fraction include two more additional terms of anyone of the
power series. Given the power series expansions, a method of
obtaining such a J-fraction, whenever it exists, is also looked at.
The first complete proof of the so called strong Hamburger moment
problem using a continued fraction is given. In this case the
continued fraction is a J-fraction.
Finally a special class of J-fraction, referred to as positive
definite J-fractions, is studied in detail.
The four chapters of this thesis are divided into sections.
Each section is given a section number which is made up of the
chapter number followed by the number of the section within the
chapter. The equations in the thesis have an equation number
consisting of the section number followed by the number of the
equation within that section.
In Chapter One, in addition to looking at some of the
historical and recent developments of corresponding continued
fractions and their applications, we also present some preliminaries.
Chapter Two deals with a different approach of understanding
the properties of the numerators and denominators of corresponding
(two point) rational functions and, continued fractions. This
approach, which is based on a pseudo orthogonality relation of the
denominator polynomials of the corresponding rational functions,
provides an insight into understanding the moment problems. In
particular, results are established which suggest a possible type
of continued fraction for solving the strong Hamburger moment
problem.
In the third chapter we study in detail the existence
conditions and corresponding properties of this new type of continued
fraction, which we call J-fractions. A method of derivation of one
of these 3-fractions is also considered. In the same chapter we also
look at the all important application of solving the strong Hamburger
moment problem, using these 3-fractions.
The fourth and final chapter is devoted entirely to the study
of the convergence behaviour of a certain class of J-fractions,
namely positive definite J-fractions. This study also provides some
interesting convergence criteria for a real and regular 3-fraction.
Finally a word concerning the literature on continued fractions
and moment problems. The more recent and up-to-date exposition on
the analytic theory of continued fractions and their applications is
the text of Jones and Thron [1980]. The two volumes of Baker and
Graves-Morris [1981] provide a very good treatment on one of the
computational aspects of the continued fractions, namely Pade
approximants. There are also the earlier texts of Wall [1948] and
Khovanskii [1963], in which the former gives an extensive insight
into the analytic theory of continued fractions while the latter,
being simpler, remains the ideal book for the beginner. In his
treatise on Applied and Computational Complex Analysis, Henrici
[1977] has also included an excellent chapter on continued fractions.
Wall [1948] also includes a few chapters on moment problems and
related areas. A much wider treatment of the classical moment
problems is provided in the excellent texts of Shohat and Tamarkin
[1943] and Akhieser [1965].Solar flare particle acceleration in collapsing magnetic trapsGrady, Keith J.https://hdl.handle.net/10023/28392019-07-01T10:17:48Z2012-06-22T00:00:00ZThe topic of this thesis is a detailed investigation of different aspects of the particle acceleration mechanisms operating in Collapsing Magnetic Traps (CMTs), which have been suggested as one possible mechanism for particle acceleration during solar flares.
The acceleration processes in CMTs are investigated using guiding centre test particle calculations.
Results including terms of different orders in the guiding centre approximation are compared to help identify which of the terms are important for the acceleration of particles. For a basic 2D CMT model the effects of different initial conditions (position, kinetic energy and pitch angle) of particles are investigated in detail. The main result is that the particles that gain most energy are those with initial pitch angles close to 90° and start in weak field regions in the centre of the CMT. The dominant acceleration mechanism for these particles is betatron acceleration, but other
particles also show signatures of Fermi acceleration.
The basic CMT model is then extended by (a) including a magnetic field component in the invariant direction and (b) by making it asymmetric. It is found that the addition of a guide field does not change the characteristics of particle acceleration very much, but for the asymmetric models the associated energy gain is found to be much smaller than in symmetric models, because the
particles can no longer remain very close to the trap centre throughout their orbit.
The test particle method is then also applied to a CMT model from the literature which contains a magnetic X-line and open and closed field lines and the results are compared with the previous results and the findings in the literature.
Finally, the theoretical framework of CMT models is extended to 2.5D models with shear flow and to fully 3D models, allowing the construction of more realistic CMT models in the future.
2012-06-22T00:00:00ZGrady, Keith J.The topic of this thesis is a detailed investigation of different aspects of the particle acceleration mechanisms operating in Collapsing Magnetic Traps (CMTs), which have been suggested as one possible mechanism for particle acceleration during solar flares.
The acceleration processes in CMTs are investigated using guiding centre test particle calculations.
Results including terms of different orders in the guiding centre approximation are compared to help identify which of the terms are important for the acceleration of particles. For a basic 2D CMT model the effects of different initial conditions (position, kinetic energy and pitch angle) of particles are investigated in detail. The main result is that the particles that gain most energy are those with initial pitch angles close to 90° and start in weak field regions in the centre of the CMT. The dominant acceleration mechanism for these particles is betatron acceleration, but other
particles also show signatures of Fermi acceleration.
The basic CMT model is then extended by (a) including a magnetic field component in the invariant direction and (b) by making it asymmetric. It is found that the addition of a guide field does not change the characteristics of particle acceleration very much, but for the asymmetric models the associated energy gain is found to be much smaller than in symmetric models, because the
particles can no longer remain very close to the trap centre throughout their orbit.
The test particle method is then also applied to a CMT model from the literature which contains a magnetic X-line and open and closed field lines and the results are compared with the previous results and the findings in the literature.
Finally, the theoretical framework of CMT models is extended to 2.5D models with shear flow and to fully 3D models, allowing the construction of more realistic CMT models in the future.Applications of statistics in flood frequency analysisAhmad, Muhammad Idreeshttps://hdl.handle.net/10023/26662019-04-01T08:33:53Z1989-01-01T00:00:00ZEstimation of the probability of occurrence of future flood events at one
or more locations across a river system is frequently required for the design of
bridges, culverts, spillways, dams and other engineering works. This study
investigates some of the statistical aspects for estimating the flood frequency
distribution at a single site and on regional basis.
It is demonstrated that generalized logistic (GL) distribution has many
properties well suited for the modelling of flood frequency data. The GL
distribution performs better than the other commonly recommended flood frequency
distributions in terms of several key properties. Specifically, it is capable of
reproducing almost the same degree of skewness typically present in observed
flood data. It appears to be more robust to the presence of extreme outliers in the
upper tail of the distribution. It has a relatively simpler mathematical form. Thus all
the well known methods of parameter estimation can be easily implemented.
It is shown that the method of probability weighted moments (PWM)
using the conventionally recommended plotting position substantially effects the
estimation of the shape parameter of the generalized extreme value (GEV)
distribution by relocating the annual maximum flood series. A location invariant
plotting position is introduced to use in estimating, by the method of PWM, the
parameters of the GEV and the GL distributions.
Tests based on empirical distribution function (EDF) statistics are
proposed to assess the goodness of fit of the flood frequency distributions. A
modified EDF test is derived that gives greater emphasis to the upper tail of a
distribution which is more important for flood frequency prediction. Significance
points are derived for the GEV and GL distributions when the parameters are to be
estimated from the sample data by the method of PWMs. The critical points are
considerably smaller than for the case where the parameters of a distribution are
assumed to be specified. Approximate formulae over the whole range of the
distribution for these tests are also developed which can be used for regional
assessment of GEV and GL models based on all the annual maximum series
simultaneously in a hydrological region.
In order to pool at-site flood data across a region into a single series for
regional analysis, the effect of standardization by at-site mean on the estimation of
the regional shape parameter of the GEV distribution is examined. Our simulation
study based on various synthetic regions reveals that the standardization by the at-site
mean underestimates the shape parameter of the GEV by about 30% of its true
value and also contributes to the separation of skewness of observed and simulated
floods. A two parameter standardization by the at-site estimates of location and
scale parameters is proposed. It does not distort the shape of the flood frequency
data in the pooling process. Therefore, it offers significantly improved estimate of
the shape parameter, allows pooling data with heterogeneous coefficients of
variation and helps to explain the separation of skewness effect.
Regions on the basis of flood statistics L-CV and USKEW are derived
for Scotland and North England. Only about 50% of the basins could be correctly
identified as belonging to these regions by a set of seven catchment characteristics.
The alternative approach of grouping basins solely on the basis of physical
properties is preferable. Six physically homogeneous groups of basins are
identified by WARD's multivariate clustering algorithm using the same seven
characteristics. These regions have hydrological homogeneity in addition to their
physical homogeneity. Dimensionless regional flood frequency curves are produced
by fitting GEV and GL distributions for each region. The GEV regional growth
curves imply a larger return period for a given magnitude flood. When floods are
described by GL model the respective return periods are considerably smaller.
1989-01-01T00:00:00ZAhmad, Muhammad IdreesEstimation of the probability of occurrence of future flood events at one
or more locations across a river system is frequently required for the design of
bridges, culverts, spillways, dams and other engineering works. This study
investigates some of the statistical aspects for estimating the flood frequency
distribution at a single site and on regional basis.
It is demonstrated that generalized logistic (GL) distribution has many
properties well suited for the modelling of flood frequency data. The GL
distribution performs better than the other commonly recommended flood frequency
distributions in terms of several key properties. Specifically, it is capable of
reproducing almost the same degree of skewness typically present in observed
flood data. It appears to be more robust to the presence of extreme outliers in the
upper tail of the distribution. It has a relatively simpler mathematical form. Thus all
the well known methods of parameter estimation can be easily implemented.
It is shown that the method of probability weighted moments (PWM)
using the conventionally recommended plotting position substantially effects the
estimation of the shape parameter of the generalized extreme value (GEV)
distribution by relocating the annual maximum flood series. A location invariant
plotting position is introduced to use in estimating, by the method of PWM, the
parameters of the GEV and the GL distributions.
Tests based on empirical distribution function (EDF) statistics are
proposed to assess the goodness of fit of the flood frequency distributions. A
modified EDF test is derived that gives greater emphasis to the upper tail of a
distribution which is more important for flood frequency prediction. Significance
points are derived for the GEV and GL distributions when the parameters are to be
estimated from the sample data by the method of PWMs. The critical points are
considerably smaller than for the case where the parameters of a distribution are
assumed to be specified. Approximate formulae over the whole range of the
distribution for these tests are also developed which can be used for regional
assessment of GEV and GL models based on all the annual maximum series
simultaneously in a hydrological region.
In order to pool at-site flood data across a region into a single series for
regional analysis, the effect of standardization by at-site mean on the estimation of
the regional shape parameter of the GEV distribution is examined. Our simulation
study based on various synthetic regions reveals that the standardization by the at-site
mean underestimates the shape parameter of the GEV by about 30% of its true
value and also contributes to the separation of skewness of observed and simulated
floods. A two parameter standardization by the at-site estimates of location and
scale parameters is proposed. It does not distort the shape of the flood frequency
data in the pooling process. Therefore, it offers significantly improved estimate of
the shape parameter, allows pooling data with heterogeneous coefficients of
variation and helps to explain the separation of skewness effect.
Regions on the basis of flood statistics L-CV and USKEW are derived
for Scotland and North England. Only about 50% of the basins could be correctly
identified as belonging to these regions by a set of seven catchment characteristics.
The alternative approach of grouping basins solely on the basis of physical
properties is preferable. Six physically homogeneous groups of basins are
identified by WARD's multivariate clustering algorithm using the same seven
characteristics. These regions have hydrological homogeneity in addition to their
physical homogeneity. Dimensionless regional flood frequency curves are produced
by fitting GEV and GL distributions for each region. The GEV regional growth
curves imply a larger return period for a given magnitude flood. When floods are
described by GL model the respective return periods are considerably smaller.Coupling of the solar wind, magnetosphere and ionosphere by MHD wavesRussell, Alexander J. B.https://hdl.handle.net/10023/25712019-07-01T10:13:50Z2010-11-30T00:00:00ZThe solar wind, magnetosphere and ionosphere are coupled by magnetohydrodynamic waves, and this gives rise to new and often unexpected behaviours that cannot be produced by a single, isolated part of the system. This thesis examines two broad instances of coupling: field-line resonance (FLR) which couples fast and Alfvén waves, and magnetosphere-ionosphere (MI-) coupling via Alfvén waves.
The first part of this thesis investigates field-line resonance for equilibria that vary in two dimensions perpendicular to the background magnetic field. This research confirms that our intuitive understanding of FLR from 1D is a good guide to events in 2D, and places 2D FLR onto a firm mathematical basis by systematic solution of the governing equations. It also reveals the new concept of ‘imprinting’ of spatial forms: spatial variations of the resonant Alfvén wave correlate strongly with the spatial form of the fast wave that drives the resonance.
MI-coupling gives rise to ionosphere-magnetosphere (IM-) waves, and we have made a detailed analysis of these waves for a 1D sheet E-region. IM-waves are characterised by two quantities: a speed v_{IM} and an angular frequency ω_{IM} , for which we have obtained analytic expressions. For an ideal magnetosphere, IM-waves are advective and move in the direction of the electric field with speed v_{IM}. The advection speed is a non-linear expression that decreases with height-integrated E-region plasma-density, hence, wavepackets steepen on their trailing edge, rapidly accessing small length-scales through wavebreaking. Inclusion of electron inertial effects in the magnetosphere introduces dispersion to IM-waves. In the strongly inertial limit (wavelength λ << λ_{e} , where λ_{e} is the electron inertial length at the base of the magnetosphere), the group velocity of linear waves goes to zero, and the waves oscillate at ω_{IM} which is an upper limit on the angular frequency of IM-waves for any wavelength. Estimates of v_{IM} show that this speed can be a significant fraction (perhaps half) of the E_{⊥} × B_{0} drift in the E-region, producing speeds of up to several hundred metres per second. The upper limit on angular frequency, ωIM , is estimated to give periods from a few hundredths of a second to several minutes. IM-waves are damped by recombination and background ionisation, giving an e-folding decay time that can vary from tens of seconds to tens of minutes.
We have also investigated the dynamics and steady-states that occur when the magnetosphere-ionosphere system is driven by large-scale Alfvénic field-aligned currents. Steady-states are dominated by two approximate solutions: an ‘upper’ solution that is valid in places where the E-region is a near perfect conductor, and a ‘lower’ solution that is valid where E-region depletion makes recombination negligible. These analytic solutions are extremely useful tools and the global steady-state can be constructed by matching these solutions across suitable boundary-layers. Furthermore, the upper solution reveals that E-region density cavities form and widen (with associated broadening of the magnetospheric downward current channel) if the downward current density exceeds the maximum current density that can be supplied by background E-region ionisation. We also supply expressions for the minimum E-region plasma-density and shortest length-scale in the steady-state.
IM-waves and steady-states are extremely powerful tools for interpreting MI-dynamics. When an E-region density cavity widens through coupling to an ideal, single-fluid MHD magnetosphere, it does so by forming a discontinuity that steps between the upper and lower steady-states. This discontinuity acts as part of an ideal IM-wave and moves in the direction of the electric field at a speed U = \sqrt{v_{IM}^{+} v_{IM}^{-}}, which is the geometric mean of v_{IM} evaluated immediately to the left and right of the discontinuity. This widening speed is typically several hundreds of metres per second. If electron inertial effects are included in the magnetosphere, then the discontinuity is smoothed, and a series of undershoots and overshoots develops behind it. These undershoots and overshoots evolve as inertial IM-waves. Initially they are weakly inertial, with a wavelength of about λ_{e}, however, strong gradients of ω_{IM} cause IM-waves to phase-mix, making their wavelength inversely proportional to time. Therefore, the waves rapidly become strongly inertial and oscillate at ω_{IM}. The inertial IM-waves drive upgoing Alfvén waves in the magnetosphere, which populate a region over the downward current channel, close to its edge. In this manner, the E-region depletion mechanism, that we have detailed, creates small-scale Alfvén waves in large-scale current systems, with properties determined by MI-coupling.
2010-11-30T00:00:00ZRussell, Alexander J. B.The solar wind, magnetosphere and ionosphere are coupled by magnetohydrodynamic waves, and this gives rise to new and often unexpected behaviours that cannot be produced by a single, isolated part of the system. This thesis examines two broad instances of coupling: field-line resonance (FLR) which couples fast and Alfvén waves, and magnetosphere-ionosphere (MI-) coupling via Alfvén waves.
The first part of this thesis investigates field-line resonance for equilibria that vary in two dimensions perpendicular to the background magnetic field. This research confirms that our intuitive understanding of FLR from 1D is a good guide to events in 2D, and places 2D FLR onto a firm mathematical basis by systematic solution of the governing equations. It also reveals the new concept of ‘imprinting’ of spatial forms: spatial variations of the resonant Alfvén wave correlate strongly with the spatial form of the fast wave that drives the resonance.
MI-coupling gives rise to ionosphere-magnetosphere (IM-) waves, and we have made a detailed analysis of these waves for a 1D sheet E-region. IM-waves are characterised by two quantities: a speed v_{IM} and an angular frequency ω_{IM} , for which we have obtained analytic expressions. For an ideal magnetosphere, IM-waves are advective and move in the direction of the electric field with speed v_{IM}. The advection speed is a non-linear expression that decreases with height-integrated E-region plasma-density, hence, wavepackets steepen on their trailing edge, rapidly accessing small length-scales through wavebreaking. Inclusion of electron inertial effects in the magnetosphere introduces dispersion to IM-waves. In the strongly inertial limit (wavelength λ << λ_{e} , where λ_{e} is the electron inertial length at the base of the magnetosphere), the group velocity of linear waves goes to zero, and the waves oscillate at ω_{IM} which is an upper limit on the angular frequency of IM-waves for any wavelength. Estimates of v_{IM} show that this speed can be a significant fraction (perhaps half) of the E_{⊥} × B_{0} drift in the E-region, producing speeds of up to several hundred metres per second. The upper limit on angular frequency, ωIM , is estimated to give periods from a few hundredths of a second to several minutes. IM-waves are damped by recombination and background ionisation, giving an e-folding decay time that can vary from tens of seconds to tens of minutes.
We have also investigated the dynamics and steady-states that occur when the magnetosphere-ionosphere system is driven by large-scale Alfvénic field-aligned currents. Steady-states are dominated by two approximate solutions: an ‘upper’ solution that is valid in places where the E-region is a near perfect conductor, and a ‘lower’ solution that is valid where E-region depletion makes recombination negligible. These analytic solutions are extremely useful tools and the global steady-state can be constructed by matching these solutions across suitable boundary-layers. Furthermore, the upper solution reveals that E-region density cavities form and widen (with associated broadening of the magnetospheric downward current channel) if the downward current density exceeds the maximum current density that can be supplied by background E-region ionisation. We also supply expressions for the minimum E-region plasma-density and shortest length-scale in the steady-state.
IM-waves and steady-states are extremely powerful tools for interpreting MI-dynamics. When an E-region density cavity widens through coupling to an ideal, single-fluid MHD magnetosphere, it does so by forming a discontinuity that steps between the upper and lower steady-states. This discontinuity acts as part of an ideal IM-wave and moves in the direction of the electric field at a speed U = \sqrt{v_{IM}^{+} v_{IM}^{-}}, which is the geometric mean of v_{IM} evaluated immediately to the left and right of the discontinuity. This widening speed is typically several hundreds of metres per second. If electron inertial effects are included in the magnetosphere, then the discontinuity is smoothed, and a series of undershoots and overshoots develops behind it. These undershoots and overshoots evolve as inertial IM-waves. Initially they are weakly inertial, with a wavelength of about λ_{e}, however, strong gradients of ω_{IM} cause IM-waves to phase-mix, making their wavelength inversely proportional to time. Therefore, the waves rapidly become strongly inertial and oscillate at ω_{IM}. The inertial IM-waves drive upgoing Alfvén waves in the magnetosphere, which populate a region over the downward current channel, close to its edge. In this manner, the E-region depletion mechanism, that we have detailed, creates small-scale Alfvén waves in large-scale current systems, with properties determined by MI-coupling.Atmospheric transport and critical layer mixing in the troposphere and stratosphereSmy, Louise Annhttps://hdl.handle.net/10023/25382019-04-01T08:33:35Z2012-06-22T00:00:00ZThis thesis aims to improve the understanding of transport and critical layer mixing in the troposphere and stratosphere. A dynamical approach is taken based on potential vorticity which has long been recognised as the essential field inducing the flow and thermodynamic structure of the atmosphere. Within the dynamical framework of critical layer mixing of potential vorticity, three main topics are addressed.
First, an idealised model of critical layer mixing in the stratospheric surf zone is examined. The effect of the shear across the critical layer on the critical layer evolution itself is investigated. In particular it is found that at small shear barotropic instability occurs and the mixing efficiency of the critical layer increases due to the instability. The effect of finite deformation length is also considered which extends previous work.
Secondly, the dynamical coupling between the stratosphere and troposphere is examined by considering the effect of direct perturbations to stratospheric potential vorticity on the evolution of midlatitude baroclinic instability. Both zonally symmetric and asymmetric perturbations to the stratospheric potential vorticity are considered, the former representative of a strong polar vortex, the latter representative of the stratospheric state following a major sudden warming. A comparison of these perturbations gives some insight into the possible influence of pre or post-sudden warming conditions on the tropospheric evolution.
Finally, the influence of the stratospheric potential vorticity distribution on lateral mixing and transport into and out of the tropical pipe, the low latitude ascending branch of the Brewer-Dobson circulation, is investigated. The stratospheric potential vorticity distribution in the tropical stratosphere is found to have a clear pattern according to the phase of the quasi-biennial oscillation (QBO). The extent of the QBO influence is quantified, by analysing trajectories of Lagrangian particles using an online trajectory code recently implemented in the Met Office's Unified Model.
2012-06-22T00:00:00ZSmy, Louise AnnThis thesis aims to improve the understanding of transport and critical layer mixing in the troposphere and stratosphere. A dynamical approach is taken based on potential vorticity which has long been recognised as the essential field inducing the flow and thermodynamic structure of the atmosphere. Within the dynamical framework of critical layer mixing of potential vorticity, three main topics are addressed.
First, an idealised model of critical layer mixing in the stratospheric surf zone is examined. The effect of the shear across the critical layer on the critical layer evolution itself is investigated. In particular it is found that at small shear barotropic instability occurs and the mixing efficiency of the critical layer increases due to the instability. The effect of finite deformation length is also considered which extends previous work.
Secondly, the dynamical coupling between the stratosphere and troposphere is examined by considering the effect of direct perturbations to stratospheric potential vorticity on the evolution of midlatitude baroclinic instability. Both zonally symmetric and asymmetric perturbations to the stratospheric potential vorticity are considered, the former representative of a strong polar vortex, the latter representative of the stratospheric state following a major sudden warming. A comparison of these perturbations gives some insight into the possible influence of pre or post-sudden warming conditions on the tropospheric evolution.
Finally, the influence of the stratospheric potential vorticity distribution on lateral mixing and transport into and out of the tropical pipe, the low latitude ascending branch of the Brewer-Dobson circulation, is investigated. The stratospheric potential vorticity distribution in the tropical stratosphere is found to have a clear pattern according to the phase of the quasi-biennial oscillation (QBO). The extent of the QBO influence is quantified, by analysing trajectories of Lagrangian particles using an online trajectory code recently implemented in the Met Office's Unified Model.The investigation of quasi-separatrix layers in solar magnetic fieldsRestante, Anna Lisahttps://hdl.handle.net/10023/21062019-07-01T10:19:51Z2011-06-20T00:00:00ZThe structure of the magnetic field is often an important factor in
many energetic processes in the solar corona.
To determine the topology of the magnetic field features such as null
points, separatrix surfaces, and separators must be found.
It has been found that these features may be preferred sites for the formation of current sheets associated with the
accumulation of free magnetic energy.
Over the last decade, it also became clear that the geometrical
analogs of the separatrices, the so-called quasi separatrix
layers, have similar properties.
This thesis has the aim of investigating these properties and to find correlations between these quantities.
Our goal is to determine the relation between the geometrical features associated with the QSLs and with current structures, sites of reconnection and topological features.
With these aims
we conduct three different studies.
First, we investigate a non linear force free magnetic field extrapolation from observed magnetogram data taken during a solar flare eruption concentrating our attention on two snapshots, one before the event and one after.
We determine the QSLs and related structures and by considering carefully how these change between the two snapshots we are able to propose a possible scenario for how the flare occurred.
In our second project we consider potential source distributions. We take different potential point source models: two four sources models already presented in the literature and a random distribution of fifteen sources.
From these potential models we conduct a detailed analysis of the relationship between topological features and QSLs.
It is found that the maxima of the Q-factor in the photosphere are located near and above the position of the subphotospheric null points (extending part way along their spines) and that their narrow QSLs are associated with the curves defined by the photospheric endpoints of all fan field lines that start from subphotospheric sources.
Our last study investigates two different flux rope emergence simulations. In particular, we take one case with and one without an overlying magnetic field.
Here, we can identify the QSLs, current, and sites of reconnection and determine the relation between them.
From this work we found that not all high-Q regions are associated with current and/or reconnection and vice-versa.
We also investigated the geometry of the field lines associated with high-Q regions to determine which geometrical behaviour of the magnetic field they are associated with. Those that are associated with reconnection also coincide with topological features such as separators.
2011-06-20T00:00:00ZRestante, Anna LisaThe structure of the magnetic field is often an important factor in
many energetic processes in the solar corona.
To determine the topology of the magnetic field features such as null
points, separatrix surfaces, and separators must be found.
It has been found that these features may be preferred sites for the formation of current sheets associated with the
accumulation of free magnetic energy.
Over the last decade, it also became clear that the geometrical
analogs of the separatrices, the so-called quasi separatrix
layers, have similar properties.
This thesis has the aim of investigating these properties and to find correlations between these quantities.
Our goal is to determine the relation between the geometrical features associated with the QSLs and with current structures, sites of reconnection and topological features.
With these aims
we conduct three different studies.
First, we investigate a non linear force free magnetic field extrapolation from observed magnetogram data taken during a solar flare eruption concentrating our attention on two snapshots, one before the event and one after.
We determine the QSLs and related structures and by considering carefully how these change between the two snapshots we are able to propose a possible scenario for how the flare occurred.
In our second project we consider potential source distributions. We take different potential point source models: two four sources models already presented in the literature and a random distribution of fifteen sources.
From these potential models we conduct a detailed analysis of the relationship between topological features and QSLs.
It is found that the maxima of the Q-factor in the photosphere are located near and above the position of the subphotospheric null points (extending part way along their spines) and that their narrow QSLs are associated with the curves defined by the photospheric endpoints of all fan field lines that start from subphotospheric sources.
Our last study investigates two different flux rope emergence simulations. In particular, we take one case with and one without an overlying magnetic field.
Here, we can identify the QSLs, current, and sites of reconnection and determine the relation between them.
From this work we found that not all high-Q regions are associated with current and/or reconnection and vice-versa.
We also investigated the geometry of the field lines associated with high-Q regions to determine which geometrical behaviour of the magnetic field they are associated with. Those that are associated with reconnection also coincide with topological features such as separators.The period ratio P₁/2P₂ in coronal wavesMacnamara, Cicely K.https://hdl.handle.net/10023/21012019-07-01T10:06:08Z2011-11-30T00:00:00ZIncreasing observational evidence of wave modes brings us to a closer understanding of the solar corona.
Coronal seismology allows us to combine wave observations and theory to determine otherwise unknown
parameters. The period ratio, P₁/2P₂, between the period P₁ of the fundamental mode and the period P₂ of
its first overtone is one such tool of coronal seismology and its departure from unity provides information
about the structure of the corona.
In this thesis we consider the period ratio P₁/2P₂ of coronal loops from a theoretical standpoint. Previous
theory and observations indicate that the period ratio is likely to be less than unity for oscillations of
coronal loops. We consider the role of damping and density structuring on the period ratio.
In Chapter 2 we consider analytically the one-dimensional wave equation with the inclusion of a generic
damping term for both uniform and non-uniform media. Results suggest that the period ratio is dominated
by longitudinal structuring rather than damping.
In Chapter 3 we consider analytically the effects of thermal conduction and compressive viscosity on the
period ratio for a longitudinally propagating sound wave. We find that damping by either thermal conduction
or compressive viscosity typically has a small effect on the period ratio. For coronal values of thermal
conduction the effect on the period ratio is negligible. For compressive viscosity the effect on the period
ratio may become important for some short hot loops.
In Chapter 4 we extend the analysis of Chapter 3 to include radiative cooling and find that it too has a
negligible effect on the period ratio for typical coronal values. As an extension to the investigation, damping
rates are considered for thermal conduction, compressive viscosity and radiative cooling. The damping
time is found to be optimal for each mechanism in a different temperature range, namely below 1 MK for
radiative cooling, 2 − 6 MK for thermal conduction and above 6 MK for compressive viscosity.
In Chapter 5 we consider analytically the period ratio for the fast kink, sausage and n = N modes of a
magnetic slab, discussing both an Epstein density profile and a simple step function profile. We find that
transverse density structuring in the form of an Epstein profile or a step function profile may contribute to
the shift of the period ratio for long thin slab-like structures. The similarity in the behaviour of the period
ratio for both profiles means either can be used as a robust model. We consider also other profiles numerically
for the kink mode, which are found to be either slab-like or Epstein-like suggesting again that it is not
necessary to distinguish the nature of the density profile when considering the period ratio.
2011-11-30T00:00:00ZMacnamara, Cicely K.Increasing observational evidence of wave modes brings us to a closer understanding of the solar corona.
Coronal seismology allows us to combine wave observations and theory to determine otherwise unknown
parameters. The period ratio, P₁/2P₂, between the period P₁ of the fundamental mode and the period P₂ of
its first overtone is one such tool of coronal seismology and its departure from unity provides information
about the structure of the corona.
In this thesis we consider the period ratio P₁/2P₂ of coronal loops from a theoretical standpoint. Previous
theory and observations indicate that the period ratio is likely to be less than unity for oscillations of
coronal loops. We consider the role of damping and density structuring on the period ratio.
In Chapter 2 we consider analytically the one-dimensional wave equation with the inclusion of a generic
damping term for both uniform and non-uniform media. Results suggest that the period ratio is dominated
by longitudinal structuring rather than damping.
In Chapter 3 we consider analytically the effects of thermal conduction and compressive viscosity on the
period ratio for a longitudinally propagating sound wave. We find that damping by either thermal conduction
or compressive viscosity typically has a small effect on the period ratio. For coronal values of thermal
conduction the effect on the period ratio is negligible. For compressive viscosity the effect on the period
ratio may become important for some short hot loops.
In Chapter 4 we extend the analysis of Chapter 3 to include radiative cooling and find that it too has a
negligible effect on the period ratio for typical coronal values. As an extension to the investigation, damping
rates are considered for thermal conduction, compressive viscosity and radiative cooling. The damping
time is found to be optimal for each mechanism in a different temperature range, namely below 1 MK for
radiative cooling, 2 − 6 MK for thermal conduction and above 6 MK for compressive viscosity.
In Chapter 5 we consider analytically the period ratio for the fast kink, sausage and n = N modes of a
magnetic slab, discussing both an Epstein density profile and a simple step function profile. We find that
transverse density structuring in the form of an Epstein profile or a step function profile may contribute to
the shift of the period ratio for long thin slab-like structures. The similarity in the behaviour of the period
ratio for both profiles means either can be used as a robust model. We consider also other profiles numerically
for the kink mode, which are found to be either slab-like or Epstein-like suggesting again that it is not
necessary to distinguish the nature of the density profile when considering the period ratio.Small-scale magnetic feature evolution as observed by Hinode/NFI and SOHO/MDIThornton, L. M.https://hdl.handle.net/10023/20832019-04-01T08:33:19Z2011-11-30T00:00:00ZThe surface (photosphere) of the Sun is threaded throughout by magnetic fields. Groups of magnetic fields form magnetic features (of a wide range of sizes in flux and area) on the surface where the fields are directed into or out of the Sun. The aim of this thesis is to examine in detail the four key processes, emergence, cancellation, fragmentation and coalescence, which determine the behaviour of small-scale magnetic features, in the Sun’s photosphere. I identify features in both Hinode/NFI and SOHO/MDI full-disk to enable these processes to be examined at the currently smallest observable scales and over an entire solar cycle.
The emerging event frequency versus flux distribution, for intranetwork emerging regions to active regions, is found to follow a power-law distribution with index -2.50, which spans nearly 7 orders of magnitude in flux (10¹⁶ - 10²³ Mx) and 18 orders of magnitude in frequency. The global rate of flux emergence is found to be 3.9 x 10²⁴ Mx day⁻¹. Since the slope of all emerged fluxes is less than -2 this implies that most of the new flux that is fed into the solar atmosphere is from small-scale emerging events. This single power-law distribution over all emerged fluxes suggest a scale-free dynamo, therefore indicating that in addition to dynamo actions in the tachocline producing sunspots, a turbulent dynamo may act throughout the convection zone. Similarly for cancellations I find a power-law relationship between the frequency of cancellation and the peak flux lost per cancelling event (for events detected in both Hinode/NFI and SOHO/MDI full-disk), with slope -2.10. Again, the process of cancellation appears to be scale free and the slope is less than -2 indicating that numerous small-scale features are cancelling the majority of flux on the Sun. I also estimate the frequency of all surface processes at solar maximum and find, 1.3 x 10⁸, 4.5 x 10⁷, 4.0 x 10⁷ and 3.6 x 10⁶ events per day over the whole surface for emergence, cancellation, fragmentation and coalescence events, respectively. All the surface processes are found to behave in a similar manner over all flux scales. The majority of events for all processes occur in features with flux below 10²º Mx, which highlights the dynamic nature of the magnetic carpet. Using SOHO/MDI full-disk data I investigate the cyclic variation of the 4 key processes throughout cycle 23. It is found that the rate of emerging events, cancellations, fragmentations and coalescences varied in anti-phase with the solar cycle by factors of 3.4, 3.1, 2.4 and 2.2, respectively over the cycle. Not surprisingly, therefore, the number of network features detected throughout the cycle also exhibits an anti-phase variation over the solar cycle by a factor of 1.9. The mean peak flux of tracked small-scale network, fragmenting, coalescing and cancelling features showed in-phase relationships with the solar cycle by factors of 1.4, 1.7, 2.4 and 1.2, respectively. The total flux which is emerged and cancelled by small-scale events, varied in anti-phase with the solar cycle, by factors of 1.9 and 3.2. This is clearly due to the variation in the number of emerging and cancelling events and the fact that the flux of individual emerging events showed no cyclic variation. The results in this thesis show that the large-scale solar cycle plays a complex role in the surface processes features undergo. The fact that the number of ephemeral regions emerging has an anti-phase variation to the solar cycle has a knock-on effect in the number of features which are available to undergo surface processes. Also decaying active regions, during more active periods, contribute more small-scale features, with high flux density, into the network which has an effect on the surface processes. This work has revealed the significant importance of small-scale features in the flux budget through continual emergence and cancellation, plus highlighted how through dynamic surface motions, small-scale features form the fundamental components with which the network is developed.
2011-11-30T00:00:00ZThornton, L. M.The surface (photosphere) of the Sun is threaded throughout by magnetic fields. Groups of magnetic fields form magnetic features (of a wide range of sizes in flux and area) on the surface where the fields are directed into or out of the Sun. The aim of this thesis is to examine in detail the four key processes, emergence, cancellation, fragmentation and coalescence, which determine the behaviour of small-scale magnetic features, in the Sun’s photosphere. I identify features in both Hinode/NFI and SOHO/MDI full-disk to enable these processes to be examined at the currently smallest observable scales and over an entire solar cycle.
The emerging event frequency versus flux distribution, for intranetwork emerging regions to active regions, is found to follow a power-law distribution with index -2.50, which spans nearly 7 orders of magnitude in flux (10¹⁶ - 10²³ Mx) and 18 orders of magnitude in frequency. The global rate of flux emergence is found to be 3.9 x 10²⁴ Mx day⁻¹. Since the slope of all emerged fluxes is less than -2 this implies that most of the new flux that is fed into the solar atmosphere is from small-scale emerging events. This single power-law distribution over all emerged fluxes suggest a scale-free dynamo, therefore indicating that in addition to dynamo actions in the tachocline producing sunspots, a turbulent dynamo may act throughout the convection zone. Similarly for cancellations I find a power-law relationship between the frequency of cancellation and the peak flux lost per cancelling event (for events detected in both Hinode/NFI and SOHO/MDI full-disk), with slope -2.10. Again, the process of cancellation appears to be scale free and the slope is less than -2 indicating that numerous small-scale features are cancelling the majority of flux on the Sun. I also estimate the frequency of all surface processes at solar maximum and find, 1.3 x 10⁸, 4.5 x 10⁷, 4.0 x 10⁷ and 3.6 x 10⁶ events per day over the whole surface for emergence, cancellation, fragmentation and coalescence events, respectively. All the surface processes are found to behave in a similar manner over all flux scales. The majority of events for all processes occur in features with flux below 10²º Mx, which highlights the dynamic nature of the magnetic carpet. Using SOHO/MDI full-disk data I investigate the cyclic variation of the 4 key processes throughout cycle 23. It is found that the rate of emerging events, cancellations, fragmentations and coalescences varied in anti-phase with the solar cycle by factors of 3.4, 3.1, 2.4 and 2.2, respectively over the cycle. Not surprisingly, therefore, the number of network features detected throughout the cycle also exhibits an anti-phase variation over the solar cycle by a factor of 1.9. The mean peak flux of tracked small-scale network, fragmenting, coalescing and cancelling features showed in-phase relationships with the solar cycle by factors of 1.4, 1.7, 2.4 and 1.2, respectively. The total flux which is emerged and cancelled by small-scale events, varied in anti-phase with the solar cycle, by factors of 1.9 and 3.2. This is clearly due to the variation in the number of emerging and cancelling events and the fact that the flux of individual emerging events showed no cyclic variation. The results in this thesis show that the large-scale solar cycle plays a complex role in the surface processes features undergo. The fact that the number of ephemeral regions emerging has an anti-phase variation to the solar cycle has a knock-on effect in the number of features which are available to undergo surface processes. Also decaying active regions, during more active periods, contribute more small-scale features, with high flux density, into the network which has an effect on the surface processes. This work has revealed the significant importance of small-scale features in the flux budget through continual emergence and cancellation, plus highlighted how through dynamic surface motions, small-scale features form the fundamental components with which the network is developed.Current sheets in the solar corona : formation, fragmentation and heatingBowness, Ruthhttps://hdl.handle.net/10023/20812019-04-01T08:33:45Z2011-11-30T00:00:00ZIn this thesis we investigate current sheets in the solar corona. The well known 1D model for the tearing mode instability is presented, before progressing to 2D where we introduce a non-uniform resistivity. The effect this has on growth rates is investigated and we find that the inclusion of the non-uniform term in η cause a decrease in the growth rate of the dominant mode. Analytical approximations and numerical simulations are then used to model current sheet formation by considering two distinct experiments. First, a magnetic field is sheared in two directions, perpendicular to each other. A twisted current layer is formed and we find that as we increase grid resolution, the maximum current increases, the width of the current layer decreases and the total current in the layer is approximately constant. This, together with the residual Lorentz force calculated, suggests that a current sheet is trying to form. The current layer then starts to fragment. By considering the parallel electric field and calculating the perpendicular vorticity, we find evidence of reconnection. The resulting temperatures easily reach the required coronal values. The second set of simulations carried out model an initially straight magnetic field which is stressed by elliptical boundary motions. A highly twisted current layer is formed and analysis of the energetics, current structures, magnetic field and the resulting temperatures is carried out. Results are similar in nature to that of the shearing experiment.
2011-11-30T00:00:00ZBowness, RuthIn this thesis we investigate current sheets in the solar corona. The well known 1D model for the tearing mode instability is presented, before progressing to 2D where we introduce a non-uniform resistivity. The effect this has on growth rates is investigated and we find that the inclusion of the non-uniform term in η cause a decrease in the growth rate of the dominant mode. Analytical approximations and numerical simulations are then used to model current sheet formation by considering two distinct experiments. First, a magnetic field is sheared in two directions, perpendicular to each other. A twisted current layer is formed and we find that as we increase grid resolution, the maximum current increases, the width of the current layer decreases and the total current in the layer is approximately constant. This, together with the residual Lorentz force calculated, suggests that a current sheet is trying to form. The current layer then starts to fragment. By considering the parallel electric field and calculating the perpendicular vorticity, we find evidence of reconnection. The resulting temperatures easily reach the required coronal values. The second set of simulations carried out model an initially straight magnetic field which is stressed by elliptical boundary motions. A highly twisted current layer is formed and analysis of the energetics, current structures, magnetic field and the resulting temperatures is carried out. Results are similar in nature to that of the shearing experiment.Magnetic flux transport simulations : applications to solar and stellar magnetic fieldsCook, Graeme Roberthttps://hdl.handle.net/10023/20722019-04-01T08:33:57Z2011-11-01T00:00:00ZMagnetic fields play a key role in a wide variety of phenomena found on the Sun. One such phenomena
is the Coronal Mass Ejection (CME) where a large amount of material is ejected from the
Sun. CME’s may directly affect the earth, therefore understanding their origin is of key importance
for space weather and the near-Earth environment.
In this thesis, the nature and evolution of solar magnetic fields is considered through a combination
of Magnetic Flux Transport Simulations and Potential Field Source Surface Models. The Magnetic
Flux Transport Simulations produce a realistic description of the evolution and distribution of the
radial magnetic field at the level of the solar photosphere. This is then applied as a lower boundary
condition for the Potential Field Source Surface Models which prescribe a coronal magnetic field.
Using these two techniques, the location and variation of coronal null points, a key element in the
Magnetic Breakout Model of CMEs, are determined. Results show that the number of coronal null
points follow a cyclic variation in phase with the solar cycle. In addition, they preferentially form
at lower latitudes as a result of the complex active latitude field. Although a significant number of
coronal nulls may exist at any one time (≈ 17), it is shown that only half may satisfy the necessary
condition for breakout. From this it is concluded that while the Magnetic Breakout Model of CMEs
is an important model in understanding the origin of the CMEs, other processes must occur in order
to explain the observed number of CMEs.
Finally, the Magnetic Flux Transport Simulations are applied to stellar magnetic fields and in particular
to the fast rotating star HD171488. From this speculative study it is shown that the Magnetic Flux Transport Simulations constructed for the Sun may be applied in very different stellar circumstances
and that for HD171488 a significantly higher rate of meridional flow (1200-1400 ms⁻¹) is required to
match observed magnetic field distributions.
2011-11-01T00:00:00ZCook, Graeme RobertMagnetic fields play a key role in a wide variety of phenomena found on the Sun. One such phenomena
is the Coronal Mass Ejection (CME) where a large amount of material is ejected from the
Sun. CME’s may directly affect the earth, therefore understanding their origin is of key importance
for space weather and the near-Earth environment.
In this thesis, the nature and evolution of solar magnetic fields is considered through a combination
of Magnetic Flux Transport Simulations and Potential Field Source Surface Models. The Magnetic
Flux Transport Simulations produce a realistic description of the evolution and distribution of the
radial magnetic field at the level of the solar photosphere. This is then applied as a lower boundary
condition for the Potential Field Source Surface Models which prescribe a coronal magnetic field.
Using these two techniques, the location and variation of coronal null points, a key element in the
Magnetic Breakout Model of CMEs, are determined. Results show that the number of coronal null
points follow a cyclic variation in phase with the solar cycle. In addition, they preferentially form
at lower latitudes as a result of the complex active latitude field. Although a significant number of
coronal nulls may exist at any one time (≈ 17), it is shown that only half may satisfy the necessary
condition for breakout. From this it is concluded that while the Magnetic Breakout Model of CMEs
is an important model in understanding the origin of the CMEs, other processes must occur in order
to explain the observed number of CMEs.
Finally, the Magnetic Flux Transport Simulations are applied to stellar magnetic fields and in particular
to the fast rotating star HD171488. From this speculative study it is shown that the Magnetic Flux Transport Simulations constructed for the Sun may be applied in very different stellar circumstances
and that for HD171488 a significantly higher rate of meridional flow (1200-1400 ms⁻¹) is required to
match observed magnetic field distributions.An investigation into the use of balance in operational numerical weather predictionDevlin, David J. J.https://hdl.handle.net/10023/19032019-07-01T10:18:21Z2011-01-01T00:00:00ZPresented in this study is a wide-ranging investigation into
the use of properties of balance in an operational numerical
weather prediction context.
Initially, a joint numerical and observational study is undertaken. We used
the Unified Model (UM), the suite of atmospheric and oceanic prediction
software used at the UK Met Office (UKMO), to locate symmetric
instabilities (SIs), an indicator of imbalanced motion. These are
areas of negative Ertel potential vorticity (in the Northern
hemisphere) calculated on surfaces of constant potential temperature.
Once located, the SIs were compared with satellite and aircraft
observational data. As a full three-dimensional calculation of Ertel PV
proved outwith the scope of this study we calculated the
two-dimensional, vertical component of the absolute vorticity, to assess
the inertial stability criterion. We found that at the synoptic scale in
the atmosphere, if there existed a symmetric instability, it was dominated
by an inertial instability.
With the appropriate observational data, evidence of inertial instability
from the vertical component of the absolute vorticity, predicted by
the UM was found at 12km horizontal grid resolution. Varying the
horizontal grid resolution allowed the estimation of a grid length scale,
above which, the inertial instability was not captured by the observational
data, of approximately 20km. Independently, aircraft data was used to
estimate that horizontal grid
resolutions above 20-25km should not model any features
of imbalance providing a real world estimate of the
lower bound of the grid resolution that should be employed by a
balanced atmospheric prediction model. A further investigation of the UM
concluded that the data assimilation scheme and time of initialisation
had no effect on the generation of SIs.
An investigation was then made into the robustness of balanced
models in the shallow water context, employing the contour-advective
semi-Lagrangian (CASL) algorithm, Dritschel & Ambaum (1997), a novel
numerical algorithm that exploits the underlying balance observed
within a geophysical flow at leading order. Initially two algorithms
were considered, which differed by the prognostic variables employed.
Each algorithm had their three-time-level semi-implicit time integration
scheme de-centred to mirror the time integration scheme of the UM. We
found that the version with potential vorticity (PV), divergence and
acceleration divergence, CA[subscript(δ,γ)], as prognostic variables
preserved the Bolin-Charney balance to a much greater degree than the
model with PV, divergence and depth anomaly CA[subscript(tilde{h},δ)],
as prognostic variables. This demonstrated that CA[subscript(δ,γ)] was better equipped to benefit from de-centring, an essential property
of any operational numerical weather prediction (NWP) model.
We then investigate the robustness of CA[subscript(δ,γ)] by simulating flows with Rossby and Froude number O(1), to find the
operational limits of the algorithm. We also investigated increasing
the efficiency of CA[subscript(δ,γ)] by increasing the
time-step Δt employed while decreasing specific convergence
criteria of the algorithm while preserving accuracy. We find that
significant efficiency gains are possible for predominantly
mid-latitude flows, a necessary step for the use of
CA[subscript(δ,γ)] in an operational NWP context.
The study is concluded by employing CASL
in the non-hydrostatic context under the Boussinesq approximation,
which allows weak stratification to be considered,
a step closer to physical reality than the shallow water case. CASL is
compared to the primitive equation pseudospectral (PEPS) and
vorticity-based pseudospectral (VPS) algorithms, both as the names suggest,
spectral-based algorithms, which again
differ by the prognostic variables employed. This
comparison is drawn to highlight the computational advantages that
CASL has over common numerical methods used in many operational
forecast centres. We find that CASL requires
significantly less artificial numerical diffusion than its
pseudospectral counterparts in simulations of Rossby number ~O(1).
Consequently, CASL obtains a much less diffuse, more accurate solution,
at a lower resolution and therefore lower computational cost.
At low Rossby number, where the flow is strongly influence by the Earth's
rotation, it is found that CASL is the most cost-effective
method. In addition, CASL also preserves a much greater proportion
of balance, diagnosed with nonlinear quasigeostrophic balance (NQG), another significant advantage
over its pseudospectral counterparts.
2011-01-01T00:00:00ZDevlin, David J. J.Presented in this study is a wide-ranging investigation into
the use of properties of balance in an operational numerical
weather prediction context.
Initially, a joint numerical and observational study is undertaken. We used
the Unified Model (UM), the suite of atmospheric and oceanic prediction
software used at the UK Met Office (UKMO), to locate symmetric
instabilities (SIs), an indicator of imbalanced motion. These are
areas of negative Ertel potential vorticity (in the Northern
hemisphere) calculated on surfaces of constant potential temperature.
Once located, the SIs were compared with satellite and aircraft
observational data. As a full three-dimensional calculation of Ertel PV
proved outwith the scope of this study we calculated the
two-dimensional, vertical component of the absolute vorticity, to assess
the inertial stability criterion. We found that at the synoptic scale in
the atmosphere, if there existed a symmetric instability, it was dominated
by an inertial instability.
With the appropriate observational data, evidence of inertial instability
from the vertical component of the absolute vorticity, predicted by
the UM was found at 12km horizontal grid resolution. Varying the
horizontal grid resolution allowed the estimation of a grid length scale,
above which, the inertial instability was not captured by the observational
data, of approximately 20km. Independently, aircraft data was used to
estimate that horizontal grid
resolutions above 20-25km should not model any features
of imbalance providing a real world estimate of the
lower bound of the grid resolution that should be employed by a
balanced atmospheric prediction model. A further investigation of the UM
concluded that the data assimilation scheme and time of initialisation
had no effect on the generation of SIs.
An investigation was then made into the robustness of balanced
models in the shallow water context, employing the contour-advective
semi-Lagrangian (CASL) algorithm, Dritschel & Ambaum (1997), a novel
numerical algorithm that exploits the underlying balance observed
within a geophysical flow at leading order. Initially two algorithms
were considered, which differed by the prognostic variables employed.
Each algorithm had their three-time-level semi-implicit time integration
scheme de-centred to mirror the time integration scheme of the UM. We
found that the version with potential vorticity (PV), divergence and
acceleration divergence, CA[subscript(δ,γ)], as prognostic variables
preserved the Bolin-Charney balance to a much greater degree than the
model with PV, divergence and depth anomaly CA[subscript(tilde{h},δ)],
as prognostic variables. This demonstrated that CA[subscript(δ,γ)] was better equipped to benefit from de-centring, an essential property
of any operational numerical weather prediction (NWP) model.
We then investigate the robustness of CA[subscript(δ,γ)] by simulating flows with Rossby and Froude number O(1), to find the
operational limits of the algorithm. We also investigated increasing
the efficiency of CA[subscript(δ,γ)] by increasing the
time-step Δt employed while decreasing specific convergence
criteria of the algorithm while preserving accuracy. We find that
significant efficiency gains are possible for predominantly
mid-latitude flows, a necessary step for the use of
CA[subscript(δ,γ)] in an operational NWP context.
The study is concluded by employing CASL
in the non-hydrostatic context under the Boussinesq approximation,
which allows weak stratification to be considered,
a step closer to physical reality than the shallow water case. CASL is
compared to the primitive equation pseudospectral (PEPS) and
vorticity-based pseudospectral (VPS) algorithms, both as the names suggest,
spectral-based algorithms, which again
differ by the prognostic variables employed. This
comparison is drawn to highlight the computational advantages that
CASL has over common numerical methods used in many operational
forecast centres. We find that CASL requires
significantly less artificial numerical diffusion than its
pseudospectral counterparts in simulations of Rossby number ~O(1).
Consequently, CASL obtains a much less diffuse, more accurate solution,
at a lower resolution and therefore lower computational cost.
At low Rossby number, where the flow is strongly influence by the Earth's
rotation, it is found that CASL is the most cost-effective
method. In addition, CASL also preserves a much greater proportion
of balance, diagnosed with nonlinear quasigeostrophic balance (NQG), another significant advantage
over its pseudospectral counterparts.MHD evolution of magnetic null points to static equilibriaFuentes Fernández, Jorgehttps://hdl.handle.net/10023/18972019-07-01T10:13:28Z2011-05-18T00:00:00ZIn magnetised plasmas, magnetic reconnection is the process of magnetic field merging and recombination through which considerable amounts of magnetic energy may be converted into other forms of energy. Reconnection is a key mechanism for solar flares and coronal mass ejections in the solar atmosphere, it is believed to be an important source of heating of the solar corona, and it plays a major role in the acceleration of particles in the Earth's magnetotail. For reconnection to occur, the magnetic field must, in localised regions, be able to diffuse through the plasma. Ideal locations for diffusion to occur are electric current layers formed from rapidly changing magnetic fields in short space scales. In this thesis we consider the formation and nature of these current layers in magnetised plasmas.
The study of current sheets and current layers in two, and more recently, three dimensions, has been a key field of research in the last decades. However, many of these studies do not take plasma pressure effects into consideration, and rather they consider models of current sheets where the magnetic forces sum to zero. More recently, others have started to consider models in which the plasma beta is non-zero, but they simply focus on the actual equilibrium state involving a current layer and do not consider how such an equilibrium may be achieved physically. In particular, they do not allow energy conversion between magnetic and internal energy of the plasma on their way to approaching the final equilibrium.
In this thesis, we aim to describe the formation of equilibrium states involving current layers at both two and three dimensional magnetic null points, which are specific locations where the magnetic field vanishes. The different equilibria are obtained through the non-resistive dynamical evolution of perturbed hydromagnetic systems. The dynamic evolution relaxes via viscous damping, resulting in viscous heating.
We have run a series of numerical experiments using LARE, a Lagrangian-remap code, that solves the full magnetohydrodynamic (MHD) equations with user controlled viscosity and resistivity. To allow strong current accumulations to be created in a static equilibrium, we set the resistivity to be zero and hence simply reach our equilibria by solving the ideal MHD equations.
We first consider the relaxation of simple homogeneous straight magnetic fields embedded in a plasma, and determine the role of the coupling between magnetic and plasma forces, both analytically and numerically. Then, we study the formation of current accumulations at 2D magnetic X-points and at 3D magnetic nulls with spine-aligned and fan-aligned current. At both 2D X-points and 3D nulls with fan-aligned current, the current density becomes singular at the location of the null. It is impossible to be precisely achieve an exact singularity, and instead, we find a gradual continuous increase of the peak current over time, and small, highly localised forces acting to form the singularity. In the 2D case, we give a qualitative description of the field around the magnetic null using a singular function, which is found to vary within the different topological regions of the field. Also, the final equilibrium depends exponentially on the initial plasma pressure. In the 3D spine-aligned experiments, in contrast, the current density is mainly accumulated along and about the spine, but not at the null. In this case, we find that the plasma pressure does not play an important role in the final equilibrium.
Our results show that current sheet formation (and presumably reconnection) around magnetic nulls is held back by non-zero plasma betas, although the value of the plasma pressure appears to be much less important for torsional reconnection. In future studies, we may consider a broader family of 3D nulls, comparing the results with the analytical calculations in 2D, and the relaxation of more complex scenarios such as 3D magnetic separators.
2011-05-18T00:00:00ZFuentes Fernández, JorgeIn magnetised plasmas, magnetic reconnection is the process of magnetic field merging and recombination through which considerable amounts of magnetic energy may be converted into other forms of energy. Reconnection is a key mechanism for solar flares and coronal mass ejections in the solar atmosphere, it is believed to be an important source of heating of the solar corona, and it plays a major role in the acceleration of particles in the Earth's magnetotail. For reconnection to occur, the magnetic field must, in localised regions, be able to diffuse through the plasma. Ideal locations for diffusion to occur are electric current layers formed from rapidly changing magnetic fields in short space scales. In this thesis we consider the formation and nature of these current layers in magnetised plasmas.
The study of current sheets and current layers in two, and more recently, three dimensions, has been a key field of research in the last decades. However, many of these studies do not take plasma pressure effects into consideration, and rather they consider models of current sheets where the magnetic forces sum to zero. More recently, others have started to consider models in which the plasma beta is non-zero, but they simply focus on the actual equilibrium state involving a current layer and do not consider how such an equilibrium may be achieved physically. In particular, they do not allow energy conversion between magnetic and internal energy of the plasma on their way to approaching the final equilibrium.
In this thesis, we aim to describe the formation of equilibrium states involving current layers at both two and three dimensional magnetic null points, which are specific locations where the magnetic field vanishes. The different equilibria are obtained through the non-resistive dynamical evolution of perturbed hydromagnetic systems. The dynamic evolution relaxes via viscous damping, resulting in viscous heating.
We have run a series of numerical experiments using LARE, a Lagrangian-remap code, that solves the full magnetohydrodynamic (MHD) equations with user controlled viscosity and resistivity. To allow strong current accumulations to be created in a static equilibrium, we set the resistivity to be zero and hence simply reach our equilibria by solving the ideal MHD equations.
We first consider the relaxation of simple homogeneous straight magnetic fields embedded in a plasma, and determine the role of the coupling between magnetic and plasma forces, both analytically and numerically. Then, we study the formation of current accumulations at 2D magnetic X-points and at 3D magnetic nulls with spine-aligned and fan-aligned current. At both 2D X-points and 3D nulls with fan-aligned current, the current density becomes singular at the location of the null. It is impossible to be precisely achieve an exact singularity, and instead, we find a gradual continuous increase of the peak current over time, and small, highly localised forces acting to form the singularity. In the 2D case, we give a qualitative description of the field around the magnetic null using a singular function, which is found to vary within the different topological regions of the field. Also, the final equilibrium depends exponentially on the initial plasma pressure. In the 3D spine-aligned experiments, in contrast, the current density is mainly accumulated along and about the spine, but not at the null. In this case, we find that the plasma pressure does not play an important role in the final equilibrium.
Our results show that current sheet formation (and presumably reconnection) around magnetic nulls is held back by non-zero plasma betas, although the value of the plasma pressure appears to be much less important for torsional reconnection. In future studies, we may consider a broader family of 3D nulls, comparing the results with the analytical calculations in 2D, and the relaxation of more complex scenarios such as 3D magnetic separators.Numerical modelling of two HMX-based plastic-bonded explosives at the mesoscaleHandley, Caroline A.https://hdl.handle.net/10023/17092019-04-01T08:33:17Z2011-06-22T00:00:00ZMesoscale models are needed to predict the effect of changes to the microstructure of plastic-bonded explosives on their shock initiation and detonation behaviour. This thesis describes the considerable progress that has been made towards a mesoscale model for two HMX-based explosives PBX9501 and EDC37. In common with previous work in the literature, the model is implemented in hydrocodes that have been designed for shock physics and detonation modelling. Two relevant physics effects, heat conduction and Arrhenius chemistry, are added to a one-dimensional Lagrangian hydrocode and correction factors are identified to improve total energy conservation. Material models are constructed for the HMX crystals and polymer binders in the explosives, and are validated by comparison to Hugoniot data, Pop-plot data and detonation wave profiles. One and two-dimensional simulations of PBX9501 and EDC37 microstructures are used to investigate the response of the bulk explosive to shock loading. The sensitivity of calculated temperature distributions to uncertainties in the material properties data is determined, and a thermodynamic explanation is given for time-independent features in temperature profiles. Hotspots are widely accepted as being responsible for shock initiation in plastic-bonded explosives. It is demonstrated that, although shock heating of crystals and binder is responsible for temperature localisation, it is not a feasible hotspot mechanism in PBX9501 and EDC37 because the temperatures generated are too low to cause significant chemical reaction in the required timescales. Critical hotspot criteria derived for HMX and the binders compare favourably to earlier studies. The speed of reaction propagation from hotspots into the surrounding explosive is validated by comparison to flame propagation data, and the temperature of the gaseous reaction products is identified as being responsible for negative pressure dependence. Hotspot size, separation and temperature requirements are identified which can be used to eliminate candidate mechanisms in future.
2011-06-22T00:00:00ZHandley, Caroline A.Mesoscale models are needed to predict the effect of changes to the microstructure of plastic-bonded explosives on their shock initiation and detonation behaviour. This thesis describes the considerable progress that has been made towards a mesoscale model for two HMX-based explosives PBX9501 and EDC37. In common with previous work in the literature, the model is implemented in hydrocodes that have been designed for shock physics and detonation modelling. Two relevant physics effects, heat conduction and Arrhenius chemistry, are added to a one-dimensional Lagrangian hydrocode and correction factors are identified to improve total energy conservation. Material models are constructed for the HMX crystals and polymer binders in the explosives, and are validated by comparison to Hugoniot data, Pop-plot data and detonation wave profiles. One and two-dimensional simulations of PBX9501 and EDC37 microstructures are used to investigate the response of the bulk explosive to shock loading. The sensitivity of calculated temperature distributions to uncertainties in the material properties data is determined, and a thermodynamic explanation is given for time-independent features in temperature profiles. Hotspots are widely accepted as being responsible for shock initiation in plastic-bonded explosives. It is demonstrated that, although shock heating of crystals and binder is responsible for temperature localisation, it is not a feasible hotspot mechanism in PBX9501 and EDC37 because the temperatures generated are too low to cause significant chemical reaction in the required timescales. Critical hotspot criteria derived for HMX and the binders compare favourably to earlier studies. The speed of reaction propagation from hotspots into the surrounding explosive is validated by comparison to flame propagation data, and the temperature of the gaseous reaction products is identified as being responsible for negative pressure dependence. Hotspot size, separation and temperature requirements are identified which can be used to eliminate candidate mechanisms in future.Theoretical magnetic flux emergenceMacTaggart, Davidhttps://hdl.handle.net/10023/16922019-07-01T10:12:08Z2011-01-01T00:00:00ZMagnetic flux emergence is the subject of how magnetic fields from
the solar interior can rise and expand into the atmosphere to produce
active regions. It is the link that joins dynamics in the convection
zone with dynamics in the atmosphere. In this thesis, we study many
aspects of magnetic flux emergence through mathematical modelling
and computer simulations. Our primary aim is to understand the key
physical processes that lie behind emergence.
The first chapter introduces flux emergence and the theoretical framework,
magnetohydrodynamics (MHD), that describes it. In the second
chapter, we discuss the numerical techniques used to solve the
highly non-linear problems that arise from flux emergence. The third
chapter summarizes the current literature. In the fourth chapter, we
consider how changing the geometry and parameter values of the initial
magnetic field can affect the dynamic evolution of the emerging
magnetic field. For an initial toroidal magnetic field, it is found that
its axis can emerge to the corona if the tube’s initial field strength is
large enough. The fifth chapter describes how flux emergence models
can produce large-scale solar eruptions. A 2.5D model of the breakout
model, using only dynamic flux emergence, fails to produce any large scale
eruptions. A 3D model of toroidal emergence with an overlying
magnetic field does, however, produce multiple large-scale eruptions
and the form of these is related to the breakout model. The sixth
chapter is concerned with signatures of flux emergence and how to
identify emerging twisted magnetic structures correctly. Here, a flux
emergence model produces signatures found in observations. The signatures
from the model, however, have different underlying physical
mechanisms to the original interpretations of the observations. The
thesis concludes with some final thoughts on current trends in theoretical
magnetic flux emergence and possible future directions.
2011-01-01T00:00:00ZMacTaggart, DavidMagnetic flux emergence is the subject of how magnetic fields from
the solar interior can rise and expand into the atmosphere to produce
active regions. It is the link that joins dynamics in the convection
zone with dynamics in the atmosphere. In this thesis, we study many
aspects of magnetic flux emergence through mathematical modelling
and computer simulations. Our primary aim is to understand the key
physical processes that lie behind emergence.
The first chapter introduces flux emergence and the theoretical framework,
magnetohydrodynamics (MHD), that describes it. In the second
chapter, we discuss the numerical techniques used to solve the
highly non-linear problems that arise from flux emergence. The third
chapter summarizes the current literature. In the fourth chapter, we
consider how changing the geometry and parameter values of the initial
magnetic field can affect the dynamic evolution of the emerging
magnetic field. For an initial toroidal magnetic field, it is found that
its axis can emerge to the corona if the tube’s initial field strength is
large enough. The fifth chapter describes how flux emergence models
can produce large-scale solar eruptions. A 2.5D model of the breakout
model, using only dynamic flux emergence, fails to produce any large scale
eruptions. A 3D model of toroidal emergence with an overlying
magnetic field does, however, produce multiple large-scale eruptions
and the form of these is related to the breakout model. The sixth
chapter is concerned with signatures of flux emergence and how to
identify emerging twisted magnetic structures correctly. Here, a flux
emergence model produces signatures found in observations. The signatures
from the model, however, have different underlying physical
mechanisms to the original interpretations of the observations. The
thesis concludes with some final thoughts on current trends in theoretical
magnetic flux emergence and possible future directions.Application of stochastic differential equations and real option theory in investment decision problemsChavanasporn, Walailuckhttps://hdl.handle.net/10023/16912019-04-01T08:33:28Z2010-11-30T00:00:00ZThis thesis contains a discussion of four problems arising from the application of
stochastic differential equations and real option theory to investment decision problems in a continuous-time framework. It is based on four papers written jointly with
the author’s supervisor.
In the first problem, we study an evolutionary stock market model in a continuous-time framework where uncertainty in dividends is produced by a single Wiener process.
The model is an adaptation to a continuous-time framework of a discrete evolutionary
stock market model developed by Evstigneev, Hens and Schenk-Hoppé (2006). We
consider the case of fix-mix strategies and derive the stochastic differential equations
which determine the evolution of the wealth processes of the various market players.
The wealth dynamics for various initial set-ups of the market are simulated.
In the second problem, we apply an entry-exit model in real option theory to study
concessionary agreements between a private company and a state government to
run a privatised business or project. The private company can choose the time to
enter into the agreement and can also choose the time to exit the agreement if the
project becomes unprofitable. An early termination of the agreement by the company
might mean that it has to pay a penalty fee to the government. Optimal times for
the company to enter and exit the agreement are calculated. The dynamics of the
project are assumed to follow either a geometric mean reversion process or geometric
Brownian motion. A comparative analysis is provided. Particular emphasis is given
to the role of uncertainty and how uncertainty affects the average time that the
concessionary agreement is active. The effect of uncertainty is studied by using Monte
Carlo simulation.
In the third problem, we study numerical methods for solving stochastic optimal
control problems which are linear in the control. In particular, we investigate methods
based on spline functions for solving the two-point boundary value problems that
arise from the method of dynamic programming. In the general case, where only
the value function and its first derivative are guaranteed to be continuous, piecewise
quadratic polynomials are used in the solution. However, under certain conditions,
the continuity of the second derivative is also guaranteed. In this case, piecewise
cubic polynomials are used in the solution. We show how the computational time
and memory requirements of the solution algorithm can be improved by effectively
reducing the dimension of the problem. Numerical examples which demonstrate the
effectiveness of our method are provided.
Lastly, we study the situation where, by partial privatisation, a government gives
a private company the opportunity to invest in a government-owned business. After
payment of an initial instalment cost, the private company’s investments are assumed
to be flexible within a range [0, k] while the investment in the business continues. We
model the problem in a real option framework and use a geometric mean reversion
process to describe the dynamics of the business. We use the method of dynamic
programming to determine the optimal time for the private company to enter and
pay the initial instalment cost as well as the optimal dynamic investment strategy
that it follows afterwards. Since an analytic solution cannot be obtained for the
dynamic programming equations, we use quadratic splines to obtain a numerical
solution. Finally we determine the optimal degree of privatisation in our model from
the perspective of the government.
2010-11-30T00:00:00ZChavanasporn, WalailuckThis thesis contains a discussion of four problems arising from the application of
stochastic differential equations and real option theory to investment decision problems in a continuous-time framework. It is based on four papers written jointly with
the author’s supervisor.
In the first problem, we study an evolutionary stock market model in a continuous-time framework where uncertainty in dividends is produced by a single Wiener process.
The model is an adaptation to a continuous-time framework of a discrete evolutionary
stock market model developed by Evstigneev, Hens and Schenk-Hoppé (2006). We
consider the case of fix-mix strategies and derive the stochastic differential equations
which determine the evolution of the wealth processes of the various market players.
The wealth dynamics for various initial set-ups of the market are simulated.
In the second problem, we apply an entry-exit model in real option theory to study
concessionary agreements between a private company and a state government to
run a privatised business or project. The private company can choose the time to
enter into the agreement and can also choose the time to exit the agreement if the
project becomes unprofitable. An early termination of the agreement by the company
might mean that it has to pay a penalty fee to the government. Optimal times for
the company to enter and exit the agreement are calculated. The dynamics of the
project are assumed to follow either a geometric mean reversion process or geometric
Brownian motion. A comparative analysis is provided. Particular emphasis is given
to the role of uncertainty and how uncertainty affects the average time that the
concessionary agreement is active. The effect of uncertainty is studied by using Monte
Carlo simulation.
In the third problem, we study numerical methods for solving stochastic optimal
control problems which are linear in the control. In particular, we investigate methods
based on spline functions for solving the two-point boundary value problems that
arise from the method of dynamic programming. In the general case, where only
the value function and its first derivative are guaranteed to be continuous, piecewise
quadratic polynomials are used in the solution. However, under certain conditions,
the continuity of the second derivative is also guaranteed. In this case, piecewise
cubic polynomials are used in the solution. We show how the computational time
and memory requirements of the solution algorithm can be improved by effectively
reducing the dimension of the problem. Numerical examples which demonstrate the
effectiveness of our method are provided.
Lastly, we study the situation where, by partial privatisation, a government gives
a private company the opportunity to invest in a government-owned business. After
payment of an initial instalment cost, the private company’s investments are assumed
to be flexible within a range [0, k] while the investment in the business continues. We
model the problem in a real option framework and use a geometric mean reversion
process to describe the dynamics of the business. We use the method of dynamic
programming to determine the optimal time for the private company to enter and
pay the initial instalment cost as well as the optimal dynamic investment strategy
that it follows afterwards. Since an analytic solution cannot be obtained for the
dynamic programming equations, we use quadratic splines to obtain a numerical
solution. Finally we determine the optimal degree of privatisation in our model from
the perspective of the government.MHD mode conversion of fast and slow magnetoacoustic waves in the solar coronaMcDougall-Bagnall, A. M. Deehttps://hdl.handle.net/10023/13612019-07-01T10:11:09Z2010-11-30T00:00:00ZThere are three main wave types present in the Sun’s atmosphere: Alfvén waves and fast and slow magnetoacoustic waves. Alfvén waves are purely magnetic and would not exist if it was not for the Sun’s magnetic field. The fast and slow magnetoacoustic waves are so named due to their relative phase speeds. As the magnetic field tends to zero, the slow wave goes to zero as the fast wave becomes the sound wave. When a resonance occurs energy may be transferred between the different modes, causing one to increase in amplitude whilst the other decreases. This is known as mode conversion. Mode conversion of fast and slow magnetoacoustic waves takes place when the characteristic wave speeds, the sound and Alfvén speeds, are equal. This occurs in regions where the ratio of the gas pressure to the magnetic pressure, known as the plasma β, is approximately unity.
In this thesis we investigate the conversion of fast and slow magnetoacoustic waves as they propagate from low- to high-β plasma. This investigation uses a combination of analytical and numerical techniques to gain a full understanding of the process. The MacCormack finite-difference method is used to model a wave as it undergoes mode conversion. Complementing this analytical techniques are employed to find the wave behaviour at, and distant from, the mode-conversion region. These methods are described in Chapter 2.
The simple, one-dimensional model of an isothermal atmosphere permeated by a uniform magnetic field is studied in Chapter 3. Gravitational acceleration is included to ensure that mode conversion takes place. Driving a slow magnetoacoustic wave on the upper boundary conversion takes place as the wave passes from low- to high-β plasma. This is expanded upon in Chapter 4 where the effects of a non-isothermal temperature profile are examined. A tanh profile is selected to mimic the steep temperature gradient found in the transition region. In Chapter 5 the complexity is increased by allowing for a two-dimensional model. For this purpose we choose a radially-expanding magnetic field which is representative of a coronal hole. In this instance the slow magnetoacoustic wave is driven upwards from the surface, again travelling from low to high β. Finally, in Chapter 6 we investigate mode conversion near a two-dimensional, magnetic null point. At the null the plasma β becomes infinitely large and a wave propagating towards the null point will experience mode conversion.
The methods used allow conversion of fast and slow waves to be described in the various model atmospheres. The amount of transmission and conversion are calculated and matched across the mode-conversion layer giving a full description of the wave behaviour.
2010-11-30T00:00:00ZMcDougall-Bagnall, A. M. DeeThere are three main wave types present in the Sun’s atmosphere: Alfvén waves and fast and slow magnetoacoustic waves. Alfvén waves are purely magnetic and would not exist if it was not for the Sun’s magnetic field. The fast and slow magnetoacoustic waves are so named due to their relative phase speeds. As the magnetic field tends to zero, the slow wave goes to zero as the fast wave becomes the sound wave. When a resonance occurs energy may be transferred between the different modes, causing one to increase in amplitude whilst the other decreases. This is known as mode conversion. Mode conversion of fast and slow magnetoacoustic waves takes place when the characteristic wave speeds, the sound and Alfvén speeds, are equal. This occurs in regions where the ratio of the gas pressure to the magnetic pressure, known as the plasma β, is approximately unity.
In this thesis we investigate the conversion of fast and slow magnetoacoustic waves as they propagate from low- to high-β plasma. This investigation uses a combination of analytical and numerical techniques to gain a full understanding of the process. The MacCormack finite-difference method is used to model a wave as it undergoes mode conversion. Complementing this analytical techniques are employed to find the wave behaviour at, and distant from, the mode-conversion region. These methods are described in Chapter 2.
The simple, one-dimensional model of an isothermal atmosphere permeated by a uniform magnetic field is studied in Chapter 3. Gravitational acceleration is included to ensure that mode conversion takes place. Driving a slow magnetoacoustic wave on the upper boundary conversion takes place as the wave passes from low- to high-β plasma. This is expanded upon in Chapter 4 where the effects of a non-isothermal temperature profile are examined. A tanh profile is selected to mimic the steep temperature gradient found in the transition region. In Chapter 5 the complexity is increased by allowing for a two-dimensional model. For this purpose we choose a radially-expanding magnetic field which is representative of a coronal hole. In this instance the slow magnetoacoustic wave is driven upwards from the surface, again travelling from low to high β. Finally, in Chapter 6 we investigate mode conversion near a two-dimensional, magnetic null point. At the null the plasma β becomes infinitely large and a wave propagating towards the null point will experience mode conversion.
The methods used allow conversion of fast and slow waves to be described in the various model atmospheres. The amount of transmission and conversion are calculated and matched across the mode-conversion layer giving a full description of the wave behaviour.Aspects of three-dimensional MHD : magnetic reconnection and rotating coronaeAl-Salti, Nasser S.https://hdl.handle.net/10023/9472019-04-01T08:33:35Z2010-06-23T00:00:00ZSolutions of the magnetohydrodynamic (MHD) equations are very important for modelling laboratory, space and astrophysical plasmas, for example the solar and stellar coronae, as well as for modelling many of the dynamic processes that occur in these different plasma environments such as the fundamental process of magnetic reconnection. Our previous understanding of the behavior of plasmas and their associated dynamic processes has been developed through two-dimensional (2D) models. However, a more realistic model should be three-dimensional (3D), but finding 3D solutions of the MHD equations is, in general, a formidable task. Only very few analytical solutions are known and even calculating solutions with numerical methods is usually far from easy.
In this thesis, 3D solutions which model magnetic reconnection and rigidly rotating magnetized coronae are presented. For magnetic reconnection, a 3D stationary MHD model is used. However, the complexity of the problem meant that so far no generic analytic solutions for reconnection in 3D exist and most work consists of numerical simulations. This has so far hampered progress in our understanding of magnetic reconnection. The model used here allows for analytic solutions at least up to a certain order of approximation and therefore gives some better insight in the significant differences between 2D and 3D reconnection. Three-dimensional numerical solutions are also obtained for this model.
Rigidly rotating magnetized coronae, on the other hand, are modeled using a set of magnetohydrostatic (MHS) equations. A general theoretical framework for calculating 3D MHS solutions outside massive rigidly rotating central bodies is presented. Under certain assumptions, the MHS equations are reduced to a single linear partial differential equation referred to as the fundamental equation of the theory. As a first step, an illustrative case of a massive rigidly rotating magnetized cylinder is considered, which somehow allows for analytic solutions in a certain domain of validity. In general, the fundamental equation of the theory can only be solved numerically and hence numerical example solutions are presented. The theory is then extended to include a more realistic case of massive rigidly rotating spherical bodies. The resulting fundamental equation of the theory in this case is too complicated to allow for analytic solutions and hence only numerical solutions are obtained using similar numerical methods to the ones used in the cylindrical case.
2010-06-23T00:00:00ZAl-Salti, Nasser S.Solutions of the magnetohydrodynamic (MHD) equations are very important for modelling laboratory, space and astrophysical plasmas, for example the solar and stellar coronae, as well as for modelling many of the dynamic processes that occur in these different plasma environments such as the fundamental process of magnetic reconnection. Our previous understanding of the behavior of plasmas and their associated dynamic processes has been developed through two-dimensional (2D) models. However, a more realistic model should be three-dimensional (3D), but finding 3D solutions of the MHD equations is, in general, a formidable task. Only very few analytical solutions are known and even calculating solutions with numerical methods is usually far from easy.
In this thesis, 3D solutions which model magnetic reconnection and rigidly rotating magnetized coronae are presented. For magnetic reconnection, a 3D stationary MHD model is used. However, the complexity of the problem meant that so far no generic analytic solutions for reconnection in 3D exist and most work consists of numerical simulations. This has so far hampered progress in our understanding of magnetic reconnection. The model used here allows for analytic solutions at least up to a certain order of approximation and therefore gives some better insight in the significant differences between 2D and 3D reconnection. Three-dimensional numerical solutions are also obtained for this model.
Rigidly rotating magnetized coronae, on the other hand, are modeled using a set of magnetohydrostatic (MHS) equations. A general theoretical framework for calculating 3D MHS solutions outside massive rigidly rotating central bodies is presented. Under certain assumptions, the MHS equations are reduced to a single linear partial differential equation referred to as the fundamental equation of the theory. As a first step, an illustrative case of a massive rigidly rotating magnetized cylinder is considered, which somehow allows for analytic solutions in a certain domain of validity. In general, the fundamental equation of the theory can only be solved numerically and hence numerical example solutions are presented. The theory is then extended to include a more realistic case of massive rigidly rotating spherical bodies. The resulting fundamental equation of the theory in this case is too complicated to allow for analytic solutions and hence only numerical solutions are obtained using similar numerical methods to the ones used in the cylindrical case.Development and application of a global magnetic field evolution model for the solar coronaYeates, Anthony Robinsonhttps://hdl.handle.net/10023/7342019-07-01T10:08:58Z2009-06-24T00:00:00ZMagnetic ﬁelds are fundamental to the structure and dynamics of the Sun’s corona. Observations show them to be locally complex, with highly sheared and twisted ﬁelds visible in solar ﬁlaments/prominences. The free magnetic energy contained in such ﬁelds is the primary source of energy for coronal mass ejections, which are important—but still poorly understood drivers of space weather in the near-Earth environment.
In this thesis, a new model is developed for the evolution of the large-scale magnetic ﬁeld in the global solar corona. The model is based on observations of the radial magnetic ﬁeld on the solar photosphere (visible surface). New active regions emerge, and their transport and dispersal by surface motions are simulated accurately with a surface ﬂux transport model. The 3D coronal magnetic ﬁeld is evolved in response to these photospheric motions using a magneto-frictional technique. The resulting sequence of nonlinear force-free equilibria traces the build-up of magnetic helicity and free energy over many months.
The global model is applied to study two phenomena: ﬁlaments and coronal mass ejections. The magnetic ﬁeld directions in a large sample of observed ﬁlaments are compared with a 6-month simulation. Depending on the twist of newly-emerging active regions, the correct chirality
is simulated for up to 96% of ﬁlaments tested. On the basis of these simulations, an explanation for the observed hemispheric pattern of ﬁlament chirality is put forward, including why exceptions occur for ﬁlaments in certain locations. Twisted magnetic ﬂux ropes develop in the simulations, often losing equilibrium and lifting off, removing helicity. The physical basis for such losses of equilibrium is demonstrated through 2D analytical models. In the 3D global simulations, the twist of emerging regions is a key parameter controlling the number of lift-offs, which may explain around a third of observed coronal mass ejections.
2009-06-24T00:00:00ZYeates, Anthony RobinsonMagnetic ﬁelds are fundamental to the structure and dynamics of the Sun’s corona. Observations show them to be locally complex, with highly sheared and twisted ﬁelds visible in solar ﬁlaments/prominences. The free magnetic energy contained in such ﬁelds is the primary source of energy for coronal mass ejections, which are important—but still poorly understood drivers of space weather in the near-Earth environment.
In this thesis, a new model is developed for the evolution of the large-scale magnetic ﬁeld in the global solar corona. The model is based on observations of the radial magnetic ﬁeld on the solar photosphere (visible surface). New active regions emerge, and their transport and dispersal by surface motions are simulated accurately with a surface ﬂux transport model. The 3D coronal magnetic ﬁeld is evolved in response to these photospheric motions using a magneto-frictional technique. The resulting sequence of nonlinear force-free equilibria traces the build-up of magnetic helicity and free energy over many months.
The global model is applied to study two phenomena: ﬁlaments and coronal mass ejections. The magnetic ﬁeld directions in a large sample of observed ﬁlaments are compared with a 6-month simulation. Depending on the twist of newly-emerging active regions, the correct chirality
is simulated for up to 96% of ﬁlaments tested. On the basis of these simulations, an explanation for the observed hemispheric pattern of ﬁlament chirality is put forward, including why exceptions occur for ﬁlaments in certain locations. Twisted magnetic ﬂux ropes develop in the simulations, often losing equilibrium and lifting off, removing helicity. The physical basis for such losses of equilibrium is demonstrated through 2D analytical models. In the 3D global simulations, the twist of emerging regions is a key parameter controlling the number of lift-offs, which may explain around a third of observed coronal mass ejections.The contour-advective semi-Lagrangian hybrid algorithm approach to weather forecasting and freely propagating inertia-gravity waves in the shallow-water systemSmith, Robert K.https://hdl.handle.net/10023/7162019-04-01T08:33:45Z2009-06-24T00:00:00ZThis thesis is aimed at extending the spherical barotropic contour-advective semi-Lagrangian (CASL) Algorithm, written in 1996 by David Dritschel and Maarten Ambaum, to more complex test cases within the shallow-water context. This is an integral part for development of any numerical model and the accuracy obtained depends on many factors, including knowledge of the initial state of the atmosphere or ocean, the numerical methods applied, and the resolutions used.
The work undertaken throughout this thesis is highly varied and produces important steps towards creating a versatile suite of programs to model all types of flow, quickly and accurately. This, as will be explained in later chapters, impacts both public safety and the world economy, since much depends on accurate medium range forecasting. There shall be an investigation of a series of tests which demonstrate certain aspects of a dynamical system and its progression into more unstable situations - including the generation and feedback of freely propagating inertia-gravity waves (hereafter “gravity waves"), which transmit throughout the system. The implications for increasing forecast accuracy will be discussed.
Within this thesis two main CASL algorithms are outlined and tested, with the accuracy of the results compared with previous results. In addition, other dynamical fields (besides geopotential height and potential vorticity) are analysed in order to assess how well the models deal with gravity waves. We shall see that such waves are sensitive to the presence, or not, of sharp potential vorticity gradients, as well as to numerical parameter settings. In particular, large time-steps (convenient for semi-Lagrangian schemes) may not only seriously affect gravity waves, but may also have an adverse impact on the primary fields of height and velocity. These problems are exacerbated by a poor resolution of potential vorticity gradients, which we shall attempt to improve.
2009-06-24T00:00:00ZSmith, Robert K.This thesis is aimed at extending the spherical barotropic contour-advective semi-Lagrangian (CASL) Algorithm, written in 1996 by David Dritschel and Maarten Ambaum, to more complex test cases within the shallow-water context. This is an integral part for development of any numerical model and the accuracy obtained depends on many factors, including knowledge of the initial state of the atmosphere or ocean, the numerical methods applied, and the resolutions used.
The work undertaken throughout this thesis is highly varied and produces important steps towards creating a versatile suite of programs to model all types of flow, quickly and accurately. This, as will be explained in later chapters, impacts both public safety and the world economy, since much depends on accurate medium range forecasting. There shall be an investigation of a series of tests which demonstrate certain aspects of a dynamical system and its progression into more unstable situations - including the generation and feedback of freely propagating inertia-gravity waves (hereafter “gravity waves"), which transmit throughout the system. The implications for increasing forecast accuracy will be discussed.
Within this thesis two main CASL algorithms are outlined and tested, with the accuracy of the results compared with previous results. In addition, other dynamical fields (besides geopotential height and potential vorticity) are analysed in order to assess how well the models deal with gravity waves. We shall see that such waves are sensitive to the presence, or not, of sharp potential vorticity gradients, as well as to numerical parameter settings. In particular, large time-steps (convenient for semi-Lagrangian schemes) may not only seriously affect gravity waves, but may also have an adverse impact on the primary fields of height and velocity. These problems are exacerbated by a poor resolution of potential vorticity gradients, which we shall attempt to improve.Balance, gravity waves and jets in turbulent shallow water flowsShipton, Jemmahttps://hdl.handle.net/10023/7082019-04-01T08:33:19Z2009-01-01T00:00:00ZThis thesis contains a thorough investigation of the properties of freely decaying turbulence in a rotating shallow water layer on a sphere. A large number
of simulations, covering an extensive range of Froude and Rossby numbers, have
been carried out using a novel numerical algorithm that exploits the underly-
ing properties of the flow. In general these flows develop coherent structures;
vortices interact, merge and migrate polewards or equatorwards depending or
their sign, leaving behind regions of homogenized potential vorticity separated
by sharp zonal jets. In the first half of the thesis we investigate new ways of looking at these structures. In the second half of the thesis we examine the properties
of the potential vorticity (PV) induced, balanced component and the residual,
unbalanced component of the flows.
Cyclone-anticyclone asymmetry has long been observed in atmospheric and
oceanic data, laboratory experiments and numerical simulations. This asymmetry is usually seen to favour anticyclonic vorticity with the asymmetry becoming more pronounced at higher Froude numbers (e.g. Polvani et al. [1994a]). We find a similar result but note that the cyclones, although fewer, are significantly
more intense and coherent. We present several ways of quantifying this across
the parameter space.
Potential vorticity homogenization is an important geophysical mechanism
responsible for sharpening jets through the expulsion of PV gradients to the edge of flow structures or domains. Sharp gradients of PV are obvious in contour plots
of this field as areas where the contours are bunched together. This suggests that
we can estimate the number of zonal jets by performing a cluster analysis on
the mean latitude of PV contours (this diagnostic is also examined by Dritschel
and McIntyre [2007]). This provides an estimate rather than an exact count of
the number of jets because the jets meander signficantly. We investigate the
accuracy of the estimates provided by different clustering techniques. We find
that the properties of the jets defy such simple classification and instead demand
a more local examination. We achieve this by examining the palinstrophy field.
This field, calculated by taking the gradient of the PV, highlights the regions
where PV contours come closer together, exactly what we would expect in regions
of strong jets. Plots of the palinstrophy field reveal the complex structure of these
features.
The potential vorticity field is even more central to the flow evolution than
the strong link with jets suggests. From a knowledge of the spatial distribution
of PV, it is possible to diagnose the balanced components of all other fields.
These components will not contain inertia-gravity waves but will contain the
dominant, large scale features of the flow. This inversion, or decomposition into
balanced (vortical) and unbalanced (wave) components, is not unique and can be
defined to varying orders of accuracy. We examine the results of four dfferent
definitions of this decomposition, two based on truncations of the full equations
and two based on an iterative procedure applied to the full equations. We find the
iterative procedure to be more accurate in that it attributes more of the flow to
the PV controlled, balanced motion. However, the truncated equations perform
surprisingly well and do not appear to suffer in accuracy at the equator, despite
the fact that the scaling on which they are based has been thought to break down
there.
We round off this study by considering the impact of the unbalanced motion on the flow. This is accomplished by splitting the integration time of the model into
intervals τ < t < τ+dτ and comparing, at the end of each interval, the balanced
components of the flow obtained by a) integrating the model from t = 0 and b)
integrating the full equations, initialised at t = τ with the balanced components
from a) at t = τ. We find that any impact of the unbalanced component of the
flow is less than the numerical noise of the model.
2009-01-01T00:00:00ZShipton, JemmaThis thesis contains a thorough investigation of the properties of freely decaying turbulence in a rotating shallow water layer on a sphere. A large number
of simulations, covering an extensive range of Froude and Rossby numbers, have
been carried out using a novel numerical algorithm that exploits the underly-
ing properties of the flow. In general these flows develop coherent structures;
vortices interact, merge and migrate polewards or equatorwards depending or
their sign, leaving behind regions of homogenized potential vorticity separated
by sharp zonal jets. In the first half of the thesis we investigate new ways of looking at these structures. In the second half of the thesis we examine the properties
of the potential vorticity (PV) induced, balanced component and the residual,
unbalanced component of the flows.
Cyclone-anticyclone asymmetry has long been observed in atmospheric and
oceanic data, laboratory experiments and numerical simulations. This asymmetry is usually seen to favour anticyclonic vorticity with the asymmetry becoming more pronounced at higher Froude numbers (e.g. Polvani et al. [1994a]). We find a similar result but note that the cyclones, although fewer, are significantly
more intense and coherent. We present several ways of quantifying this across
the parameter space.
Potential vorticity homogenization is an important geophysical mechanism
responsible for sharpening jets through the expulsion of PV gradients to the edge of flow structures or domains. Sharp gradients of PV are obvious in contour plots
of this field as areas where the contours are bunched together. This suggests that
we can estimate the number of zonal jets by performing a cluster analysis on
the mean latitude of PV contours (this diagnostic is also examined by Dritschel
and McIntyre [2007]). This provides an estimate rather than an exact count of
the number of jets because the jets meander signficantly. We investigate the
accuracy of the estimates provided by different clustering techniques. We find
that the properties of the jets defy such simple classification and instead demand
a more local examination. We achieve this by examining the palinstrophy field.
This field, calculated by taking the gradient of the PV, highlights the regions
where PV contours come closer together, exactly what we would expect in regions
of strong jets. Plots of the palinstrophy field reveal the complex structure of these
features.
The potential vorticity field is even more central to the flow evolution than
the strong link with jets suggests. From a knowledge of the spatial distribution
of PV, it is possible to diagnose the balanced components of all other fields.
These components will not contain inertia-gravity waves but will contain the
dominant, large scale features of the flow. This inversion, or decomposition into
balanced (vortical) and unbalanced (wave) components, is not unique and can be
defined to varying orders of accuracy. We examine the results of four dfferent
definitions of this decomposition, two based on truncations of the full equations
and two based on an iterative procedure applied to the full equations. We find the
iterative procedure to be more accurate in that it attributes more of the flow to
the PV controlled, balanced motion. However, the truncated equations perform
surprisingly well and do not appear to suffer in accuracy at the equator, despite
the fact that the scaling on which they are based has been thought to break down
there.
We round off this study by considering the impact of the unbalanced motion on the flow. This is accomplished by splitting the integration time of the model into
intervals τ < t < τ+dτ and comparing, at the end of each interval, the balanced
components of the flow obtained by a) integrating the model from t = 0 and b)
integrating the full equations, initialised at t = τ with the balanced components
from a) at t = τ. We find that any impact of the unbalanced component of the
flow is less than the numerical noise of the model.Equilibrium and dynamics of collisionless current sheetsHarrison, Michael Georgehttps://hdl.handle.net/10023/7052019-04-01T08:33:48Z2009-06-24T00:00:00ZIn this thesis examples of translationally invariant one-dimensional (1D) Vlasov-Maxwell (VM) equilibria are investigated. The 1D VM equilibrium equations are equivalent to the motion of
a pseudoparticle in a conservative pseudopotential, with the pseudopotential being proportional to one of the diagonal components of the plasma pressure tensor. A necessary condition on the pseudopotential (plasma pressure) to allow for force-free 1D VM equilibria is formulated. It is
shown that linear force-free 1D VM solutions correspond to the case where the pseudopotential is an attractive central potential. The pseudopotential for the force-free Harris sheet is found and a Fourier transform method is used to find the corresponding distribution function. The solution is extended to include a family of equilibria that describe the transition between the Harris sheet and the force-free Harris sheet. These equilibria are used in 2.5D particle-in-cell simulations of
magnetic reconnection. The structure of the diffusion region is compared for simulations starting from anti-parallel magnetic field configurations with different strengths of guide field and self-consistent linear and non-linear force-free magnetic fields. It is shown that gradients of off-diagonal
components of the electron pressure tensor are the dominant terms that give rise to the
reconnection electric field. The typical scale length of the electron pressure tensor components in the weak guide field case is of the order of the electron bounce widths in a field reversal. In the strong guide field case the scale length reduces to the electron Larmor radius in the guide magnetic field.
2009-06-24T00:00:00ZHarrison, Michael GeorgeIn this thesis examples of translationally invariant one-dimensional (1D) Vlasov-Maxwell (VM) equilibria are investigated. The 1D VM equilibrium equations are equivalent to the motion of
a pseudoparticle in a conservative pseudopotential, with the pseudopotential being proportional to one of the diagonal components of the plasma pressure tensor. A necessary condition on the pseudopotential (plasma pressure) to allow for force-free 1D VM equilibria is formulated. It is
shown that linear force-free 1D VM solutions correspond to the case where the pseudopotential is an attractive central potential. The pseudopotential for the force-free Harris sheet is found and a Fourier transform method is used to find the corresponding distribution function. The solution is extended to include a family of equilibria that describe the transition between the Harris sheet and the force-free Harris sheet. These equilibria are used in 2.5D particle-in-cell simulations of
magnetic reconnection. The structure of the diffusion region is compared for simulations starting from anti-parallel magnetic field configurations with different strengths of guide field and self-consistent linear and non-linear force-free magnetic fields. It is shown that gradients of off-diagonal
components of the electron pressure tensor are the dominant terms that give rise to the
reconnection electric field. The typical scale length of the electron pressure tensor components in the weak guide field case is of the order of the electron bounce widths in a field reversal. In the strong guide field case the scale length reduces to the electron Larmor radius in the guide magnetic field.Magnetic skeletons and 3D magnetic reconnectionHaynes, Andrew L.https://hdl.handle.net/10023/4752019-04-01T08:33:18Z2008-06-23T00:00:00ZThe upper atmosphere of the sun, the solar corona, is approximately 1,000,000K hotter than the surface of the Sun, a property which cannot be explained by the
normal processes of heat conduction and radiation. It is now commonly believed
that the magnetic fields which fill the solar atmosphere, and propagate down
into the interior of the Sun, are important for transferring and transforming
energy from the strong plasma flows inside the Sun into the corona as heat. I have
investigated an elementary flux interaction which forms a fundamental building
block of the coronal heating process. This interaction involves two opposite
polarity sources on the Sun's surface in the presence of an overlying magnetic
field. To fully understand how this interaction transfers heat into the solar
corona, the magnetic skeleton is required, which shows possible sites of
heating that are due to magnetic reconnection.
A magnetic field is best described by its magnetic skeleton. The most
important parts of the magnetic skeleton to find are the null points, from
which separatrix surfaces extend that divide magnetic flux of different
topology. Part of this thesis proposes a new method of finding null
points, for which the accuracy is shown and then compared with another commonly
used method (which gave false results).
Using these techniques for finding the magnetic skeleton in the magnetic
interaction above, the evolution of the skeleton was found to head through
seven distinct states, some of which were far more complicated than expected.
This included a high number of separators (the intersection of two separatrix
surfaces), which are a known location of magnetic reconnection. This
separator reconnection was shown to be the main heating mechanism in
this interaction, from which the total amount and rates of reconnection in the
experiment was calculated. This led to the discovery of recursive reconnection, a process where magnetic flux is reconnected before reconnecting
back to its original state, to allow for the process to repeat again. This
recursive reconnection was shown to allow far more reconnection than would have
been previously expected, all of which releases heat into the neighbouring
areas of the atmosphere.
Finally, the interaction was modelled with sources of different magnetic radii
but of equal flux. This showed that when the antisymmetric nature of the
previous interactions was removed, there was little change in the reconnection
rates, but when the strength of the overlying magnetic field was increased, the
reconnection rates were found to increase. This increase in the overlying
magnetic field strength also produced a new magnetic feature called a
bald-edge, which was found to replace some of the null points. These
bald-edges were found to be associated with surfaces similar to separatrix
surfaces that divide flux of different topology but do not extend from a null
point. Also features similar to separators extend from these bald-edges.
Electronic version does not contain additional mpeg files
2008-06-23T00:00:00ZHaynes, Andrew L.The upper atmosphere of the sun, the solar corona, is approximately 1,000,000K hotter than the surface of the Sun, a property which cannot be explained by the
normal processes of heat conduction and radiation. It is now commonly believed
that the magnetic fields which fill the solar atmosphere, and propagate down
into the interior of the Sun, are important for transferring and transforming
energy from the strong plasma flows inside the Sun into the corona as heat. I have
investigated an elementary flux interaction which forms a fundamental building
block of the coronal heating process. This interaction involves two opposite
polarity sources on the Sun's surface in the presence of an overlying magnetic
field. To fully understand how this interaction transfers heat into the solar
corona, the magnetic skeleton is required, which shows possible sites of
heating that are due to magnetic reconnection.
A magnetic field is best described by its magnetic skeleton. The most
important parts of the magnetic skeleton to find are the null points, from
which separatrix surfaces extend that divide magnetic flux of different
topology. Part of this thesis proposes a new method of finding null
points, for which the accuracy is shown and then compared with another commonly
used method (which gave false results).
Using these techniques for finding the magnetic skeleton in the magnetic
interaction above, the evolution of the skeleton was found to head through
seven distinct states, some of which were far more complicated than expected.
This included a high number of separators (the intersection of two separatrix
surfaces), which are a known location of magnetic reconnection. This
separator reconnection was shown to be the main heating mechanism in
this interaction, from which the total amount and rates of reconnection in the
experiment was calculated. This led to the discovery of recursive reconnection, a process where magnetic flux is reconnected before reconnecting
back to its original state, to allow for the process to repeat again. This
recursive reconnection was shown to allow far more reconnection than would have
been previously expected, all of which releases heat into the neighbouring
areas of the atmosphere.
Finally, the interaction was modelled with sources of different magnetic radii
but of equal flux. This showed that when the antisymmetric nature of the
previous interactions was removed, there was little change in the reconnection
rates, but when the strength of the overlying magnetic field was increased, the
reconnection rates were found to increase. This increase in the overlying
magnetic field strength also produced a new magnetic feature called a
bald-edge, which was found to replace some of the null points. These
bald-edges were found to be associated with surfaces similar to separatrix
surfaces that divide flux of different topology but do not extend from a null
point. Also features similar to separators extend from these bald-edges.Solar flux emergence : a three-dimensional numerical studyMurray, Michelle J.https://hdl.handle.net/10023/4412019-07-01T10:12:22Z2008-06-01T00:00:00ZFlux is continually emerging on the Sun, making its way from the solar interior up into the atmosphere. Emergence occurs on small-scales in the quiet Sun where magnetic fragments emerge, interact and cancel and on large-scales in active regions where magnetic fields emerge and concentrate to form sunspots. This thesis has been concerned with the large-scale emergence process and in particular the results from previous solar flux emergence modelling endeavours.
Modelling uses numerical methods to evolve a domain representing simplified layers of the Sun’s atmosphere, within which the subsurface layer contains magnetic flux. The flux is initialised such that it will rises towards the surface at the start of the simulation. Once the flux reaches the solar surface, it can only emerge into the atmosphere if a magnetic buoyancy instability occurs, after
which it expands rapidly both vertically and horizontally.
The aim of this thesis is to test the robustness of these general findings from simulations to date upon the seed magnetic field. More explicitly, we have used three-dimensional numerical simulations to investigate how variations in the subsurface magnetic field modify the emergence process
and the resulting atmospheric field. We initially consider a simple constant twist flux tube for the seed field and vary the tube’s magnetic field strength and degree of twist. Additionally, we have examined the effects of using non-constant twist flux tubes as the seed field by choosing two different profiles for the twist that are functions of the tube’s radius. Finally, we have investigated the effects of increasing the complexity of the seed field by positioning two flux tubes below the solar
surface and testing two different configurations for the tubes. In both cases, the magnetic fields of the two tubes are such that, once the tubes come into contact with each other, reconnection occurs and a combined flux system is formed.
From our investigations, we conclude that the general emergence results given by previous simulations are robust. However, for constant twist tubes with low field strength and twist, the buoyancy instability fails to be launched when the tubes reach the photosphere and they remain trapped in the low atmosphere. Similarly, when the non-constant twist profile results in a low tension force
throughout the tube, we find that the buoyancy instability is not initialised.
2008-06-01T00:00:00ZMurray, Michelle J.Flux is continually emerging on the Sun, making its way from the solar interior up into the atmosphere. Emergence occurs on small-scales in the quiet Sun where magnetic fragments emerge, interact and cancel and on large-scales in active regions where magnetic fields emerge and concentrate to form sunspots. This thesis has been concerned with the large-scale emergence process and in particular the results from previous solar flux emergence modelling endeavours.
Modelling uses numerical methods to evolve a domain representing simplified layers of the Sun’s atmosphere, within which the subsurface layer contains magnetic flux. The flux is initialised such that it will rises towards the surface at the start of the simulation. Once the flux reaches the solar surface, it can only emerge into the atmosphere if a magnetic buoyancy instability occurs, after
which it expands rapidly both vertically and horizontally.
The aim of this thesis is to test the robustness of these general findings from simulations to date upon the seed magnetic field. More explicitly, we have used three-dimensional numerical simulations to investigate how variations in the subsurface magnetic field modify the emergence process
and the resulting atmospheric field. We initially consider a simple constant twist flux tube for the seed field and vary the tube’s magnetic field strength and degree of twist. Additionally, we have examined the effects of using non-constant twist flux tubes as the seed field by choosing two different profiles for the twist that are functions of the tube’s radius. Finally, we have investigated the effects of increasing the complexity of the seed field by positioning two flux tubes below the solar
surface and testing two different configurations for the tubes. In both cases, the magnetic fields of the two tubes are such that, once the tubes come into contact with each other, reconnection occurs and a combined flux system is formed.
From our investigations, we conclude that the general emergence results given by previous simulations are robust. However, for constant twist tubes with low field strength and twist, the buoyancy instability fails to be launched when the tubes reach the photosphere and they remain trapped in the low atmosphere. Similarly, when the non-constant twist profile results in a low tension force
throughout the tube, we find that the buoyancy instability is not initialised.The origin and dynamic interaction of solar magnetic fieldsWilmot-Smith, A.L.https://hdl.handle.net/10023/4172019-07-01T10:20:10Z2008-06-01T00:00:00ZThe dynamics of the solar corona are dominated by the magnetic field which creates its structure. The
magnetic field in most of the corona is ‘frozen’ to the plasma very effectively. The exception is in small
localised regions of intense current concentrations where the magnetic field can slip through the plasma
and a restructuring of the magnetic field can occur. This process is known as magnetic reconnection and is
believed to be responsible for a wide variety of phenomena in the corona, from the rapid energy release of solar flares to the heating of the high-temperature corona.
The coronal field itself is three-dimensional (3D), but much of our understanding of reconnection has
been developed through two-dimensional (2D) models. This thesis describes several models for fully 3D
reconnection, with both kinematic and fully dynamic models presented. The reconnective behaviour is
shown to be fundamentally different in many respects from the 2D case. In addition a numerical experiment
is described which examines the reconnection process in coronal magnetic flux tubes whose photospheric
footpoints are spun, one type of motion observed to occur on the Sun.
The large-scale coronal field itself is thought to be generated by a magnetohydrodynamic dynamo operating
in the solar interior. Although the dynamo effect itself is not usually associated with reconnection,
since the essential element of the problem is to account for the presence of large-scale fields, reconnection
is essential for the restructuring of the amplified small-scale flux. Here we examine some simple models of
the solar-dynamo process, taking advantage of their simplicity to make a full exploration of their behaviour
in a variety of parameter regimes. A wide variety of dynamic behaviour is found in each of the models,
including aperiodic modulation of cyclic solutions and intermittency that strongly resembles the historic
record of solar magnetic activity.
2008-06-01T00:00:00ZWilmot-Smith, A.L.The dynamics of the solar corona are dominated by the magnetic field which creates its structure. The
magnetic field in most of the corona is ‘frozen’ to the plasma very effectively. The exception is in small
localised regions of intense current concentrations where the magnetic field can slip through the plasma
and a restructuring of the magnetic field can occur. This process is known as magnetic reconnection and is
believed to be responsible for a wide variety of phenomena in the corona, from the rapid energy release of solar flares to the heating of the high-temperature corona.
The coronal field itself is three-dimensional (3D), but much of our understanding of reconnection has
been developed through two-dimensional (2D) models. This thesis describes several models for fully 3D
reconnection, with both kinematic and fully dynamic models presented. The reconnective behaviour is
shown to be fundamentally different in many respects from the 2D case. In addition a numerical experiment
is described which examines the reconnection process in coronal magnetic flux tubes whose photospheric
footpoints are spun, one type of motion observed to occur on the Sun.
The large-scale coronal field itself is thought to be generated by a magnetohydrodynamic dynamo operating
in the solar interior. Although the dynamo effect itself is not usually associated with reconnection,
since the essential element of the problem is to account for the presence of large-scale fields, reconnection
is essential for the restructuring of the amplified small-scale flux. Here we examine some simple models of
the solar-dynamo process, taking advantage of their simplicity to make a full exploration of their behaviour
in a variety of parameter regimes. A wide variety of dynamic behaviour is found in each of the models,
including aperiodic modulation of cyclic solutions and intermittency that strongly resembles the historic
record of solar magnetic activity.Strong interaction between two co-rotating vortices in rotating and stratified flows.Bambrey, Ross R.https://hdl.handle.net/10023/3412019-07-01T10:18:45Z2007-01-01T00:00:00ZIn this study we investigate the interactions between two co-rotating vortices.
These vortices are subject to rapid rotation and stable stratification such as
are found in planetary atmospheres and oceans. By conducting a large number
of simulations of vortex interactions, we intend to provide an overview of the
interactions that could occur in geophysical turbulence.
We consider a wide parameter space covering the vortices height-to-width
aspect-ratios, their volume ratios and the vertical offset between them. The vortices
are initially separated in the horizontal so that they reside at an estimated
margin of stability. The vortices are then allowed to evolve for a period of approximately
20 vortex revolutions.
We find that the most commonly observed interaction under the quasi-geostrophic
(QG) regime is partial-merger, where only part of the smaller vortex is incorporated
into the larger, stronger vortex. On the other hand, a large number of filamentary
and small scale structures are generated during the interaction. We find
that, despite the proliferation of small-scale structures, the self-induced vortex energy
exhibits a mean `inverse-cascade' to larger scale structures. Interestingly we
observe a range of intermediate-scale structures that are preferentially sheared
out during the interactions, leaving two vortex populations, one of large-scale
vortices and one of small-scale vortices.
We take a subset of the parameter space used for the QG study and perform
simulations using a non-hydrostatic model. This system, free of the layer-wise
two-dimensional constraints and geostrophic balance of the QG model, allows for
the generation of inertia-gravity waves and ageostrophic advection. The study of
the interactions between two co-rotating, non-hydrostatic vortices is performed
over four different Rossby numbers, two positive and two negative, allowing for
the comparison of cyclonic and anti-cyclonic interactions. It is found that a
greater amount of wave-like activity is generated during the interactions in anticyclonic
situations. We also see distinct qualitative differences between the interactions
for cyclonic and anti-cyclonic regimes.
2007-01-01T00:00:00ZBambrey, Ross R.In this study we investigate the interactions between two co-rotating vortices.
These vortices are subject to rapid rotation and stable stratification such as
are found in planetary atmospheres and oceans. By conducting a large number
of simulations of vortex interactions, we intend to provide an overview of the
interactions that could occur in geophysical turbulence.
We consider a wide parameter space covering the vortices height-to-width
aspect-ratios, their volume ratios and the vertical offset between them. The vortices
are initially separated in the horizontal so that they reside at an estimated
margin of stability. The vortices are then allowed to evolve for a period of approximately
20 vortex revolutions.
We find that the most commonly observed interaction under the quasi-geostrophic
(QG) regime is partial-merger, where only part of the smaller vortex is incorporated
into the larger, stronger vortex. On the other hand, a large number of filamentary
and small scale structures are generated during the interaction. We find
that, despite the proliferation of small-scale structures, the self-induced vortex energy
exhibits a mean `inverse-cascade' to larger scale structures. Interestingly we
observe a range of intermediate-scale structures that are preferentially sheared
out during the interactions, leaving two vortex populations, one of large-scale
vortices and one of small-scale vortices.
We take a subset of the parameter space used for the QG study and perform
simulations using a non-hydrostatic model. This system, free of the layer-wise
two-dimensional constraints and geostrophic balance of the QG model, allows for
the generation of inertia-gravity waves and ageostrophic advection. The study of
the interactions between two co-rotating, non-hydrostatic vortices is performed
over four different Rossby numbers, two positive and two negative, allowing for
the comparison of cyclonic and anti-cyclonic interactions. It is found that a
greater amount of wave-like activity is generated during the interactions in anticyclonic
situations. We also see distinct qualitative differences between the interactions
for cyclonic and anti-cyclonic regimes.Effect of structuring on coronal loop oscillationsMcEwan, Michael P.https://hdl.handle.net/10023/2652019-07-01T10:07:07Z2007-06-01T00:00:00ZIn this Thesis the theoretical understanding of oscillations in coronal structures is developed. In particular, coronal loops are modelled as magnetic slabs of plasma. The effect of introducing inhomogeneities on the frequency of oscillation is studied. Current observations indicate the existence of magnetohydrodynamic (MHD) modes in the corona, so there is room for improved modelling of these modes to understand the physical processes more completely. One application of the oscillations, on which this Thesis concentrates, is coronal seismology. Here, the improved theoretical models are applied to observed instances of coronal MHD waves with the aim of determining information regarding the medium in which these waves propagate.
In Chapter two, the effect of gravity on the frequency of the longitudinal slow MHD mode is considered. A thin, vertical coronal slab of magnetised plasma, with gravity acting along the longitudinal axis of the slab is studied, and the effect on the frequency of oscillation for the uniform, stratified and structured cases is addressed. In particular, an isothermal plasma, a two-layer plasma and a plasma with a linear temperature profile are studied. Here, a thin coronal loop, with its footpoints embedded in the chromosphere-photosphere is modelled, and the effects introduced by both gravity and the structuring of density at the footpoint layers are studied. In this case, gravity increases the frequency of oscillation and causes amplification of the eigenfunctions by stratification. Furthermore, density enhancements at the footpoints cause a decrease in the oscillating frequency, and can inhibit wave propagation, depending on the parameter regime.
In Chapter three, the effects introduced to the transverse fast MHD mode when gravity acts across a thin coronal slab of magnetised plasma are considered. This study concentrates on the modification of the frequency due to the dynamical effect of gravity in the equation of motion, neglecting the effect of stratification. Here, gravity causes a reduction of the oscillating frequency of the fundamental fast mode, and increases the lower cutoff frequency. In effect, for this configuration, gravity allows the transition between body and surface modes, in a slab geometry.
It is found, in these two studies, that each harmonic is affected in a unique manner due to structuring or stratification of density. With this knowledge, in Chapter four, a new parameter is derived; P1/2P2, the ratio of the period of the fundamental harmonic of oscillation to twice the period of its first harmonic. This parameter is shown to be a measure of the longitudinal structuring of density along a coronal loop, and the departure of this ratio from unity can yield information regarding the lengthscales of the structure. This process is highlighted using the known observations, indicating that P1/2P2 may prove to be a useful diagnostic tool for coronal seismology.
Finally, in Chapter five, outwardly propagating coronal slow MHD modes are observed and are used to infer coronal parameters. The possibility of using these oscillations to infer near-resolution lengthscales in coronal loops -- fine-scale strands -- is also discussed. TRACE observations are used to determine the average period, phase speed, detection length, amplitude and energy flux for the propagating slow MHD mode. The indication is that the source of these oscillations appears very localised in space, and the driver only acts for a few periods, suggesting the perturbations are driven by leaky p-modes (solar surface modes).
2007-06-01T00:00:00ZMcEwan, Michael P.In this Thesis the theoretical understanding of oscillations in coronal structures is developed. In particular, coronal loops are modelled as magnetic slabs of plasma. The effect of introducing inhomogeneities on the frequency of oscillation is studied. Current observations indicate the existence of magnetohydrodynamic (MHD) modes in the corona, so there is room for improved modelling of these modes to understand the physical processes more completely. One application of the oscillations, on which this Thesis concentrates, is coronal seismology. Here, the improved theoretical models are applied to observed instances of coronal MHD waves with the aim of determining information regarding the medium in which these waves propagate.
In Chapter two, the effect of gravity on the frequency of the longitudinal slow MHD mode is considered. A thin, vertical coronal slab of magnetised plasma, with gravity acting along the longitudinal axis of the slab is studied, and the effect on the frequency of oscillation for the uniform, stratified and structured cases is addressed. In particular, an isothermal plasma, a two-layer plasma and a plasma with a linear temperature profile are studied. Here, a thin coronal loop, with its footpoints embedded in the chromosphere-photosphere is modelled, and the effects introduced by both gravity and the structuring of density at the footpoint layers are studied. In this case, gravity increases the frequency of oscillation and causes amplification of the eigenfunctions by stratification. Furthermore, density enhancements at the footpoints cause a decrease in the oscillating frequency, and can inhibit wave propagation, depending on the parameter regime.
In Chapter three, the effects introduced to the transverse fast MHD mode when gravity acts across a thin coronal slab of magnetised plasma are considered. This study concentrates on the modification of the frequency due to the dynamical effect of gravity in the equation of motion, neglecting the effect of stratification. Here, gravity causes a reduction of the oscillating frequency of the fundamental fast mode, and increases the lower cutoff frequency. In effect, for this configuration, gravity allows the transition between body and surface modes, in a slab geometry.
It is found, in these two studies, that each harmonic is affected in a unique manner due to structuring or stratification of density. With this knowledge, in Chapter four, a new parameter is derived; P1/2P2, the ratio of the period of the fundamental harmonic of oscillation to twice the period of its first harmonic. This parameter is shown to be a measure of the longitudinal structuring of density along a coronal loop, and the departure of this ratio from unity can yield information regarding the lengthscales of the structure. This process is highlighted using the known observations, indicating that P1/2P2 may prove to be a useful diagnostic tool for coronal seismology.
Finally, in Chapter five, outwardly propagating coronal slow MHD modes are observed and are used to infer coronal parameters. The possibility of using these oscillations to infer near-resolution lengthscales in coronal loops -- fine-scale strands -- is also discussed. TRACE observations are used to determine the average period, phase speed, detection length, amplitude and energy flux for the propagating slow MHD mode. The indication is that the source of these oscillations appears very localised in space, and the driver only acts for a few periods, suggesting the perturbations are driven by leaky p-modes (solar surface modes).Electron cyclotron heating and current drive using the electron Bernstein modesMcGregor, Duncan Ekundayohttps://hdl.handle.net/10023/2122019-04-01T08:33:24Z2007-01-01T00:00:00ZElectron Bernstein waves are a mode of oscillation in a plasma, thought a candidate for providing radiofrequency heating and non-inductive current drive in spherical tokamaks. Previous studies of these modes have relied on neglecting or simplifying the contribution made by relativistic effects.
This work presents fully relativistic numerical results that show the mode's dispersion relation for a wide range of parameters. Relativistic effects are shown to shift the location of the resonance as in previous studies, but the effects beyond this are shown to matter only in high temperature (10-20keV) plasmas. At these higher temperatures however, the fully relativistic model differs markedly. The assumption that the mode is electrostatic is looked at, and found to be inadequate for describing fully the electron Bernstein modes dispersion relation.
Simple estimates that neglect toroidal effects show current drive efficiency is expected to be an order of magnitude higher than that for conventional electron cyclotron current drive using the O or X modes. It is shown for a number of model tokamaks that heating the center of the plasma and driving current using EBWs is impossible launching from the outside due to strong damping of the wave at higher cyclotron harmonics.
Results from a code based on a more complicated semi-analytic model of current drive, that includes toroidal effects and calculates the average current drive over the magnetic surface, confirm the higher expected current drive efficiency, and the code is shown to give good agreement with a Fokker-Planck code. The higher values of perpendicular refractive index associated with the EBWs are shown to mitigate the deleterious effects of trapping on current drive efficiency to a small extent. The details of the magnetic field are found to be unimportant to the calculation beyond determing where the wave is absorbed.
The codes written to produce these results are outlined before each set of results. The last of these is considerably faster than conventional Fokker-Planck codes and a useful tool in studying electron cyclotron current drive in the future.
2007-01-01T00:00:00ZMcGregor, Duncan EkundayoElectron Bernstein waves are a mode of oscillation in a plasma, thought a candidate for providing radiofrequency heating and non-inductive current drive in spherical tokamaks. Previous studies of these modes have relied on neglecting or simplifying the contribution made by relativistic effects.
This work presents fully relativistic numerical results that show the mode's dispersion relation for a wide range of parameters. Relativistic effects are shown to shift the location of the resonance as in previous studies, but the effects beyond this are shown to matter only in high temperature (10-20keV) plasmas. At these higher temperatures however, the fully relativistic model differs markedly. The assumption that the mode is electrostatic is looked at, and found to be inadequate for describing fully the electron Bernstein modes dispersion relation.
Simple estimates that neglect toroidal effects show current drive efficiency is expected to be an order of magnitude higher than that for conventional electron cyclotron current drive using the O or X modes. It is shown for a number of model tokamaks that heating the center of the plasma and driving current using EBWs is impossible launching from the outside due to strong damping of the wave at higher cyclotron harmonics.
Results from a code based on a more complicated semi-analytic model of current drive, that includes toroidal effects and calculates the average current drive over the magnetic surface, confirm the higher expected current drive efficiency, and the code is shown to give good agreement with a Fokker-Planck code. The higher values of perpendicular refractive index associated with the EBWs are shown to mitigate the deleterious effects of trapping on current drive efficiency to a small extent. The details of the magnetic field are found to be unimportant to the calculation beyond determing where the wave is absorbed.
The codes written to produce these results are outlined before each set of results. The last of these is considerably faster than conventional Fokker-Planck codes and a useful tool in studying electron cyclotron current drive in the future.Topological structure of the magnetic solar coronaMaclean, Rhona Clairehttps://hdl.handle.net/10023/1512019-07-01T10:10:17Z2007-01-01T00:00:00ZThe solar corona is a highly complex and active plasma environment, containing many exotic
phenomena such as solar flares, coronal mass ejections, prominences, coronal loops, and bright
points. The fundamental element giving coherence to all this apparent diversity is the strong
coronal magnetic field, the dominant force shaping the plasma there.
In this thesis, I model the 3D magnetic fields of various coronal features using the techniques
of magnetic charge topology (MCT) in a potential field. Often the real coronal field has departures
from its potential state, but these are so small that the potential field method is accurate enough to
pick out the essential information about the structure and evolution of the magnetic field.
First I perform a topological analysis of the magnetic breakout model for an eruptive solar
flare. Breakout is represented by a topological bifurcation that allows initially enclosed flux from
the newly emerging region in my MCT model of a delta sunspot to reconnect out to large distances.
I produce bifurcation diagrams showing how this behaviour can be caused by changing
the strength or position of the emerging flux source, or the force-free parameter α.
I also apply MCT techniques to observational data of a coronal bright point, and compare the
results to 3D numerical MHD simulations of the effects of rotating the sources that underlie the
bright point. The separatrix surfaces that surround each rotating source are found to correspond
to locations of high parallel electric field in the simulations, which is a signature of magnetic
reconnection. The large-scale topological structure of the magnetic field is robust to changes in
the method of deriving point magnetic sources from the magnetogram.
Next, I use a Green’s function expression for the magnetic field to relax the standard topological
assumption of a flat photosphere and extend the concept of MCT into a spherical geometry,
enabling it to be applied to the entire global coronal magnetic field. I perform a comprehensive
study of quadrupolar topologies in this new geometry, producing several detailed bifurcation
diagrams. These results are compared to the equivalent study for a flat photosphere. A new topological
state is found on the sphere which has no flat photosphere analogue; it is named the dual
intersecting state because of its twin separators joining a pair of magnetic null points.
The new spherical techniques are then applied to develop a simple six-source topological
model of global magnetic field reversal during the solar cycle. The evolution of the large-scale
global magnetic field is modelled through one complete eleven-year cycle, beginning at solar minimum.
Several distinct topological stages are exhibited: active region flux connecting across the
equator to produce transequatorial loops; the dominance of first the leading and then the following
polarities of the active regions; the magnetic isolation of the poles; the reversal of the polar field;
the new polar field connecting back to the active regions; the polar flux regaining its dominance;
and the disappearance of the transequatorial loops.
2007-01-01T00:00:00ZMaclean, Rhona ClaireThe solar corona is a highly complex and active plasma environment, containing many exotic
phenomena such as solar flares, coronal mass ejections, prominences, coronal loops, and bright
points. The fundamental element giving coherence to all this apparent diversity is the strong
coronal magnetic field, the dominant force shaping the plasma there.
In this thesis, I model the 3D magnetic fields of various coronal features using the techniques
of magnetic charge topology (MCT) in a potential field. Often the real coronal field has departures
from its potential state, but these are so small that the potential field method is accurate enough to
pick out the essential information about the structure and evolution of the magnetic field.
First I perform a topological analysis of the magnetic breakout model for an eruptive solar
flare. Breakout is represented by a topological bifurcation that allows initially enclosed flux from
the newly emerging region in my MCT model of a delta sunspot to reconnect out to large distances.
I produce bifurcation diagrams showing how this behaviour can be caused by changing
the strength or position of the emerging flux source, or the force-free parameter α.
I also apply MCT techniques to observational data of a coronal bright point, and compare the
results to 3D numerical MHD simulations of the effects of rotating the sources that underlie the
bright point. The separatrix surfaces that surround each rotating source are found to correspond
to locations of high parallel electric field in the simulations, which is a signature of magnetic
reconnection. The large-scale topological structure of the magnetic field is robust to changes in
the method of deriving point magnetic sources from the magnetogram.
Next, I use a Green’s function expression for the magnetic field to relax the standard topological
assumption of a flat photosphere and extend the concept of MCT into a spherical geometry,
enabling it to be applied to the entire global coronal magnetic field. I perform a comprehensive
study of quadrupolar topologies in this new geometry, producing several detailed bifurcation
diagrams. These results are compared to the equivalent study for a flat photosphere. A new topological
state is found on the sphere which has no flat photosphere analogue; it is named the dual
intersecting state because of its twin separators joining a pair of magnetic null points.
The new spherical techniques are then applied to develop a simple six-source topological
model of global magnetic field reversal during the solar cycle. The evolution of the large-scale
global magnetic field is modelled through one complete eleven-year cycle, beginning at solar minimum.
Several distinct topological stages are exhibited: active region flux connecting across the
equator to produce transequatorial loops; the dominance of first the leading and then the following
polarities of the active regions; the magnetic isolation of the poles; the reversal of the polar field;
the new polar field connecting back to the active regions; the polar flux regaining its dominance;
and the disappearance of the transequatorial loops.