Now showing items 1-4 of 4

  • MACiE (Mechanism, Annotation and Classification in Enzymes) : novel tools for searching catalytic mechanisms 

    Holliday, Gemma L.; Almonacid, Daniel E.; Bartlett, Gail J.; O'Boyle, Noel M.; Torrance, James W.; Murray-Rust, Peter; Mitchell, John Blayney Owen; Thornton, Janet M. (2007-01) - Journal article
    MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms, and is publicly available as a web-based data resource. This paper presents the first release of a web-based search ...
  • Mining housekeeping genes with a Naive Bayes classifier 

    De Ferrari, Luna; Aitken, Stuart (2006-10-30) - Journal article
    Background: Traditionally, housekeeping and tissue specific genes have been classified using direct assay of mRNA presence across different tissues, but these experiments are costly and the results not easy to compare and ...
  • A relation based measure of semantic similarity for Gene Ontology annotations 

    Sheehan, Brendan; Quigley, Aaron John; Gaudin, Benoit; Dobson, Simon Andrew (2008-11-04) - Journal article
    Background: Various measures of semantic similarity of terms in bio-ontologies such as the Gene Ontology (GO) have been used to compare gene products. Such measures of similarity have been used to annotate uncharacterized ...
  • TarO : a target optimisation system for structural biology 

    Overton, I M; van Niekerk, C A; Carter, L G; Dawson, A; Martin, D M; Cameron, S; McMahon, S A; White, Malcolm F; Hunter, W N; Naismith, Jim; Barton, G J (2008-07) - Journal article
    TarO (http://www.compbio.dundee.ac.uk/taro) offers a single point of reference for key bioinformatics analyses relevant to selecting proteins or domains for study by structural biology techniques. The protein sequence is ...