DSpace Collection:

Novel routes to high performance lithium-ion batteries

Drewett, Nicholas E. — Wed, 26 Jun 2013 00:00:00 GMT

Abstract: This thesis investigates several approaches to the development of high-performance batteries. A general background to the field and an introduction to the experimental methods used are given in Chapters 1 and 2 respectively. Chapter 3 presents a study of ordered and disordered LiNi₀.₅Mn₁.₅O₄ materials produced using an optimised resorcinol-formaldehyde gel (R-F gel) synthetic technique. Both materials exhibited good electrochemical properties and minimal side reaction with the electrolyte. Structural analyses of the materials in various states of discharge and charge were undertaken, and from these the charge / discharge processes were elucidated. In chapter 4 R-F gel synthesised Li(Ni₁/₃Mn₁/₃Co₁/₃)O₂ is studied and found to exhibit a high degree of structural stability on cycling, as well as excellent capacity, cyclability and rate capability. Photoelectron spectroscopy studies revealed that the R-F gel derived particles have highly stable surfaces. A discussion of the results and their significance, with particular regard to the outstanding electrochemical performance observed, is also presented. Chapter 5 sets out an investigation into the nature of R-F gel synthesised 0.5Li₂MnO₃:0.5LiNi₁/₃Mn₁/₃Co₁/₃O₂. The electrochemical data revealed that, after an initial activation stage, the R-F gel derived material exhibited a high capacity, good cyclability and exceptional rate capability. This chapter also considers some initial structural investigations and the electrochemical processes occurring on charge. In chapter 6 the use of ether-based electrolytes, combined with various cathode materials, in lithium-oxygen batteries is examined. The formation of decomposition products was observed, and a scheme suggesting probable reaction pathways is given. It was noted that significant quantities of the desired discharge product, lithium peroxide, were formed on the 1st cycle discharge, implying some electrolyte / cathode combinations do demonstrate a degree of stability. A summary of the results and a discussion of their significance are also included.

Structural basis of Lassa fever nucleoprotein binding pathogen-associated pattern molecule dsRNA

Xue, Jiang — Fri, 30 Nov 2012 00:00:00 GMT

Abstract: Lassa fever virus (LASV) infects thousands of people and produces more than 5,000 deaths each year in West Africa. This severe virus is a huge threat, as it transmits between human and rodents, and no effective vaccine or drug is available currently. One key of getting control of this disease lies in the nucleoprotein (NP) of LASV, which plays an essential role in viral replication, transcription and immune suppression. The full length NP crystal structure has been solved, showing a novel structural fold and multi-functions with unusual mechanisms in immune suppression and viral RNA transcription. The C-terminal domain of LAVS NP is a 3’-5’ exonuclease, whose activity is essential for viral immune suppression. This domain alone can suppress an immune response and can degrade dsRNAs with specific preference higher than for ssRNAs. However, the detail of the mechanism is unclear. To understand the mechanism while avoiding another domain’s effect (the N-terminal domain), the C-terminal domain of LASV NP was expressed and purified, and pathogen-associated pattern molecular RNAs were synthesized chemically and biologically to carry on crystallization and functional testing. The C-domain crystals in complex with a pathogen-associated pattern molecule, triphosphate 8 nucleotide dsRNA were obtained. The crystal belongs to the space group P3 with unit cell dimension a=b=177.6 Å, c=56.49Å, α =β=90°, γ=120°. This crystal structure showed that the dsRNA binds in the 3’-5’ exonuclease active site with one 3’ end of the dsRNA perfectly sitting for cleavage. We are trying to figure out the detailed mechanism by mutagenesis, fluorescence-labeled RNA gel scan and band shift assays.

Development of novel active site and allosteric inhibitors of enzymes associated with cancer, neurodegenerative diseases and bacterial infections

Pirrie, Lisa — Sat, 01 Jun 2013 00:00:00 GMT

Abstract: The sirtuins are a family of NAD⁺-dependent deacetylase enzymes which are implicated in various illnesses including cancer and neurodegenerative diseases. Part I of this thesis describes the synthesis and biological evaluation of inhibitors of the SIRT1 and SIRT2 isoforms of this important family of enzymes. Chapter 1 gives an overview of sirtuin biology and the physiological roles of these enzymes. In particular the link between SIRT1 and cancer and SIRT2 and its role in the onset of neurodegenerative diseases is discussed. A review of the most potent and selective inhibitors of SIRT1 and SIRT2 is given including an introduction to the tenovin and cambinol classes of inhibitor. Chapter 2 describes various issues relating to the structure of the important chemical tool tenovin-6. The synthesis of analogues to improve the solubility, determine the preferred conformation and verify the products of metabolism of tenovin-6 is presented including their evaluation by in vitro and in cell methods. Part II of this chapter reports the design and use of a ¹H NMR method used to monitor the sirtuin-mediated deacetylation reaction. This was particularly relevant due to concerns raised about the possibility of false positive results obtained with the commercially available assay kit commonly used by the sirtuin community. This new ¹H NMR method was used to validate the inhibition of SIRT2 by tenovin-6. Chapter 3 describes the parallel synthesis and evaluation of tenovin analogues as inhibitors of SIRT1 and SIRT2. This study identified that replacement of the t-butyl substituent of tenovin-6 with the 3,5-dihalogen-4-alkoxy substitution pattern led to a variety of analogues having SIRT2 selectivity. As well as the collection of valuable SAR data, in cell data is also presented for the analogues. Chapter 4 provides attempts to rationalise the SAR data collected in Chapters 2 and 3 through a computational study. The molecular docking software GOLD was used to predict the binding site of the tenovin scaffold and hence rationalise the observed potencies of various analogues. Chapter 5 reports the synthesis and biological evaluation of triazole and cambinol analogues as SIRT1 and SIRT2 inhibitors. Part I details the synthesis and in vitro testing of a series of ring constrained tenovin analogues based on the 1,4-disubstituted triazole using click chemistry. A series of 1,5-disubstituted analogues were also synthesised. Part II describes the synthesis of S-alkylated cambinol analogues and the effect of N3-methylation upon activity and selectivity towards SIRT1. Part II of this thesis details the synthesis and biological testing of novel potent allosteric inhibitors of RmlA. RmlA is the first enzyme in the L-rhamnose biosynthetic pathway in bacteria. L-rhamnose is an important component of the bacterial cell wall and as such RmlA is therefore an important target in the discovery of novel anti-bacterial compounds. Chapter 7 provides an overview of the RmlA enzyme including its role in L-rhamnose biosynthesis and why it is an attractive target for anti-bacterial drug discovery. No small molecule inhibitors of RmlA have been reported previously. Chapter 8 describes the design and synthesis of pyrimidine-2,4-dione analogues as novel allosteric inhibitors of RmlA. SAR data is generated and rationalised by X-ray crystallographic techniques to study the structures of complexes of RmlA with various analogues. Analogues were also tested for their ability to inhibit the growth of the important human pathogen Mycobacterium tuberculosis.

Carbon monoxide hydrogenation using ruthenium catalysts

Blank, Jan Hendrik — Fri, 30 Nov 2012 00:00:00 GMT

Synergism between N-heterocyclic carbene and phosphorus-based ligands in ruthenium and palladium catalytic systems

Schmid, Thibault E. — Tue, 18 Dec 2012 00:00:00 GMT

Abstract: N-heterocyclic carbenes (NHCs) have become a very popular class of ligands, which has found uses in numerous catalytic applications. The use of such compounds in combination with phosphorus-based ligands within metal complexes has enabled the design of very active yet robust catalytic systems. The following chapters will describe the design of novel well-defined palladium- and ruthenium-based pre-catalysts featuring a NHC and a phosphorus-based ligand, referred at as mixed ligand systems. Such species were employed in catalysis where their properties appeared highly beneficial, uses at low catalysts loading and under harsh conditions were then envisioned. The preparation of a series of well-defined palladium mixed NHC/phosphine species is presented in chapter 2. Their catalytic activity in the aqueous Suzuki-Miyaura reaction of aryl chlorides and boronic acids, using low catalyst loadings, is described. The observation of catalytic activity of the latter systems in the hydration of nitriles prompted us to further investigate this reactivity. This reaction appeared to be operative in the absence of palladium species and could be performed under base-catalysed conditions, which was studied in detail and depicted in chapter 3. The combination of a NHC and a phosphite ligand in ruthenium olefin metathesis pre-catalysts has been underexplored. Preliminary results showed that such species could be readily prepared and presented an unusual geometry and a high catalytic activity. Variations in phosphite-containing ruthenium olefin metathesis pre-catalysts are presented. Chapter 4 describes the investigation of various Schrock carbene moieties in such architectures, as well as their implications in structure and catalysis. Chapter 5 depicts attempts to design olefin metathesis Z-selective pre-catalysts by inserting a chelating NHC moiety within phosphite-containing ruthenium species. This dissertation concludes on the potential of such mixed species in catalysis, and armed with the new knowledge provided by this work, proposes potential developments of such chemistry in the design of always more robust and active catalytic systems.

The search for allosteric inhibitors

Brear, Paul — Wed, 26 Jun 2013 00:00:00 GMT

Abstract: This thesis describes the development of chemical tools that inhibit the sialidases NanA and NanB from Streptococcus pneumonia. The primary focus was on the discovery of allosteric inhibitors of NanA and NanB, however, promising inhibitors that act by binding at the active site of these enzymes were also investigated. Chapter 1 gives an overview of the use of chemical tools in the field of chemical biology. It focuses in particular on chemical tools that function by the allosteric regulation of their target proteins. The uses, advantages and methods of discovery of allosteric tools are discussed. Finally this chapter introduces the use of serendipitous binders for the discovery of allosteric sites. In particular, the use of CHES to identify novel allosteric sites on the sialidase NanB is proposed. Chapter 2 describes how the ‘hits’ from a series of high throughput screens were reanalysed using a wide range of secondary assays to eliminate any false positives that were contaminating the results. This process removed eight of the eleven ‘hits’. Two of the remaining three compounds were then analysed further in an attempt to characterise their binding mode to NanA and/or NanB using modelling and X-ray crystallographic studies. Whilst, it was not possible to confirm the binding mode by X-ray crystallography modelling studies using the modelling software GOLD generated possible binding modes for these inhibitors. A structure activity relationship study was conducted for both compounds in an attempt to generate more potent inhibitors. Chapter 3 moves from the use of high throughput screens to identify hits against NanA and NanB to the use of the serendipitous binding of N-cyclohexyl-2-aminoethanesulfonic acid in the active site of NanB for the development of selective NanB inhibitors. First taurine was identified as the minimum unit of N-cyclohexyl-2-aminoethanesulfonic acid required to bind to the active site of NanB. Taurine was then used as the basis of an optimisation study. This chapter concludes with the identification of 2-(benzylammonio)ethanesulfonate as the next key intermediate in the development of N-cyclohexyl-2-aminoethanesulfonic acid based active site inhibitors of NanB. Chapter 4 follows on from Chapter 3 with the optimisation of 2-(benzylammonio)ethanesulfonate describing the design and synthesis of a wide range of analogues. From these compounds 2-[(3-chlorobenzyl)ammonio]ethanesulfonate was identified as the most potent and selective inhibitor. Detailed analysis of the binding of 2-[(3-chlorobenzyl)ammonio]ethanesulfonate to NanB gave a rationale for its improved inhibitory activity. The increase in inhibition occurred because on binding of 2-[(3-chlorobenzyl)ammonio]ethanesulfonate to the active site of NanB a well coordinated water molecule was displaced. The displacement of this water caused an increase in the flexibility of the enzyme’s 352 loop. A detailed study of the flexibility of this loop in response to various N-cyclohexyl-2-aminoethanesulfonic acid based chemical tools was then conducted. The research in chapters 2 and 3 has recently been published. In Chapter 5 a molecule of N-cyclohexyl-2-aminoethanesulfonic acid that binds serendipitously in a previously unmentioned secondary site is elaborated into a ligand, known as Optactin, that binds strongly and selectively at this secondary site. It was then shown that Optactin inhibited NanB by binding at this secondary site. It was therefore concluded that this secondary site was in fact an allosteric site that could be used for the regulation of NanB. Chapter 6 describes the development of a rationalisation for the inhibition of NanB by Optactin. This study included the X-ray crystallographic analysis of the apo-NanB structure and the NanB-Optactin complex under a range of conditions. This was followed by mechanistic studies that identified the point in the catalytic cycle at which Optactin was inhibiting NanB. This chapter concludes with a hypothesis for the mechanism of inhibition of NanB by Optactin.

Synthesis of porous metal phosphonate frameworks for applications in gas separation and storage

Wharmby, Michael T. — Tue, 22 May 2012 00:00:00 GMT

Abstract: Porous metal phosphonate framework materials were synthesised by solvothermal reaction of bis(α-aminomethylenephosphonic acid) ligands with divalent and trivalent metal cations. The syntheses and characterisation by NMR and, where possible, single crystal X-ray diffraction of seven bisphosphonic acid ligands, including N,N′-piperazinebis(methylenephosphonic acid) (H₄L), its racemic and enantiopure (R) 2-methyl (H₄L′ and R-H₄L′) and 2,5-dimethyl (H₄L′′) derivatives, and N,N′-4,4′-bipiperidinebis(methylenephosphonic acid) (H₄LL) are reported. Syntheses of the known phase Y₂(LH₂)₃·5H₂O and the new phases, STA-13(Y) (St Andrews microporous material No. 13) and Y₂(R-L′H₂)₃·4H₂O, from reactions of Y(AcO)₃ with H₄L, H₄L′ and R-H₄L′ respectively are reported. The as-prepared and dehydrated structures of each phase have been determined from either laboratory or synchrotron powder X-ray diffraction data. Reaction of Y(AcO)₃ and H₄L′′ is shown to form a phase with a different structure. The features determining which structure crystallises are discussed. Syntheses of other rare-earth forms of STA-13 (Sc³⁺, Gd³⁺–Yb³⁺) and the porosity of each phase to N₂ are reported. STA-13(Y) is the most porous form with loadings of ∼3 mmol g⁻¹ and ∼4 mmol g⁻¹ for N₂ and CO₂ respectively. MIL-91(Fe) was synthesised for the first time from reactions of Fe³⁺ cations with H₄L. Its structure was confirmed by Rietveld refinement, but it was not porous. The first syntheses of [Fe₄L₁.₅(AcO)₁.₅(OH,H₂O)₃]·0.5NH₄5.5H₂O (L= L or L′) are reported, from reactions of H₄L or H₄L′ in the presence of an excess of Fe³⁺ cations. The phase is related to a previously reported Co phase. The synthesis of divalent metal bisphosphonate STA-12(Mg) (Mg₂(H₂O)₂L·5.6H₂O) was reported for the first time and its structure determined from single crystal X-ray diffraction. The dehydration behaviour of this material was compared with the known forms of STA-12. STA-12(Mg) is porous to both N₂ (∼5.5 mmol g⁻¹) and CO₂ (~ 8.5 mmol g⁻¹). Reaction of H₄LL with Co²⁺ and Ni²⁺ gave two materials isoreticular with STA-12, labelled STA-16(Co) and STA-16(Ni). The structures of both materials were solved from synchrotron powder X-ray diffraction data. On dehydration, STA-16(Co) undergoes a reversible structural transition to an unknown structure. By contrast, STA-16(Ni) retains the same symmetry in the dehydrated form and its structure was determined from synchrotron powder X-ray diffraction data. Both materials are porous to N₂, with an uptake of up to 22.2 mmol g⁻¹, and CO₂ with maximum loading of 21.7 mmol g⁻¹. NLDFT analysis of N₂ adsorption data confirm the crystallographically determined pore radii. Syntheses of other frameworks with divalent cations and initial reactions of H₄LL with trivalent cations are also reported.

Polymer electrolytes : synthesis and characterisation

Maranski, Krzysztof Jerzy — Wed, 26 Jun 2013 00:00:00 GMT

Abstract: Crystalline polymer/salt complexes can conduct, in contrast to the view held for 30 years. The alpha-phase of the crystalline poly(ethylene oxide)₆:LiPF₆ is composed of tunnels formed from pairs of (CH₂-CH₂-O)ₓ chains, within which the Li⁺ ions reside and along which the latter migrate.¹ When a polydispersed polymer is used, the tunnels are composed of 2 strands, each built from a string of PEO chains of varying length. It has been suggested that the number and the arrangement of the chain ends within the tunnels affects the ionic conductivity.² Using polymers with uniform chain length is important if we are to understand the conduction mechanism since monodispersity results in the chain ends occurring at regular distances along the tunnels and imposes a coincidence of the chain ends between the two strands.² Since each Li⁺ is coordinated by 6 ether oxygens (3 oxygens from each of the two polymeric strands forming a tunnel), monodispersed PEOs with the number of ether oxygen being a multiple of 3 (NO = 3n) can form either “all-ideal” or “all-broken” coordination environments at the end of each tunnel, while for both NO = 3n-1 and NO = 3n+1 complexes, both “ideal” and “broken” coordinations must occur throughout the structure. A synthetic procedure has been developed and a series of 6 consecutive (increment of EO unit) monodispersed molecular weight PEOs have been synthesised. The synthesis involves one end protection of a high purity glycol, functionalisation of the other end, ether coupling reaction (Williamson’s type ether synthesis³), deprotection and reiteration of ether coupling. The parameters of the process and purification methods have been strictly controlled to ensure unprecedented level of monodispersity for all synthesised samples. Thus obtained high purity polymers have been used to study the influence of the individual chain length on the structure and conductivity of the crystalline complexes with LiPF₆. The results support the previously suggested model of the chain-ends arrangement in the crystalline complexes prepared with monodispersed PEO² over a range of consecutive chain lengths. The synthesised complexes constitute a series of test samples for establishing detailed mechanism of ionic conductivity. Such series of monodispersed crystalline complexes have been studied and characterised here (PXRD, DSC, AC impedance) for the first time. References: 1. G. S. MacGlashan, Y. G. Andreev, P. G. Bruce, Structure of the polymer electrolyte poly(ethylene oxide)₆:LiAsF₆. Nature, 1999, 398(6730): p. 792-794. 2. E. Staunton, Y. G. Andreev, P. G. Bruce, Factors influencing the conductivity of crystalline polymer electrolytes. Faraday Discussions, 2007, 134: p. 143-156. 3. A. Williamson, Theory of Aetherification. Philosophical Magazine, 1850, 37: p. 350-356.

Chemical biology studies on 5-nitrofurans and sirtuin inhibitors

Zhou, Linna — Sat, 01 Dec 2012 00:00:00 GMT

Abstract: Part I: Target identification studies are one of the most difficult but rewarding challenges in chemical biology. Part I of this thesis describes target identification studies for 5-nitrofuran containing hits. The 5-nitrofurans used in this study were identified in a phenotypic screen for compounds that induced melanocyte cells death in zebrafish. Chapter 1 provides brief overviews on three related areas of the project: 1) the use of zebrafish as a model organism in drug discovery; 2) phenotypic screening using zebrafish and 3) the strategies used in target identification studies. Chapter 2 describes the synthesis of and SAR studies on two series of 5-nitrofuran containing analogues. The design and preparation of biotinylated chemical probes based on the SAR data is also described. These chemical tools are then used in affinity chromatography studies and genetic validation of a potential target (zebrafish Aldh2) of the 5-nitrofuran compounds is reported. Chapter 3 provides a review of the biological and chemical processes that human ALDHs are known to mediate. In addition, small molecules that modulate ALDH2 activity are reviewed. A detailed study of the interaction between 5-nitrofurans and human ALDH2 including in vitro enzymatic assays is described leading to the conclusion that the 5- nitrofurans under study are substrates of human ALDH2. Further mechanism of action investigations using model reactions are also presented. Chapter 4 introduces the use of 5-nitrofuran containing drugs in the clinic and highlights the reported side-effects. Further investigation of the interaction between ALDH2 and 5- nitrofurans in zebrafish and yeast using ALDH2 inhibitors is described. Based on these results, a combination therapy strategy is proposed. Finally, the trypanocidal activity of the newly synthesised 5-nitrofurans is discussed. Experimental details and future work for Part I are presented in Chapters 5 and 6 respectively. Part II: Human sirtuins are associated with various biological functions and diseases, including cancer and neurodegeneration. Previous work from the Westwood Lab has led to the discovery of the tenovins that act as inhibitors of SIRT1 and SIRT2. Part II of the thesis reports the development of potent fixed ring tenovin analogues with high SIRT2 selectivity. Chapter 7 provides a brief review of the biology of human SIRT2 and the reported SIRT2 inhibitors available to date. This is followed by a short summary of the previous work on the tenovins in the Westwood Lab and the design of the fixed ring tenovin analogues. Chapter 8 describes the synthesis of three series of fixed ring tenovin analogues. SAR data is generated based on in vitro enzymatic assays against both SIRT1 and SIRT2 and the prepared analogues showed relatively high potency and selectivity against SIRT2. Further cell-based deacetylation assay are also discussed. All the experimental details are reported in Chapter 9 and Chapter 10 provides with conclusions and proposed future work.

Supported ionic liquid phase catalysis in continuous supercritical flow

Duque, Ruben — Wed, 26 Jun 2013 00:00:00 GMT

Abstract: The separation of the expensive catalysts from the solvent and reaction products remains one of the major disadvantages of homogeneous catalytic reactions, which are otherwise advantageous because of their high activity, tuneable selectivity and ease of study. Ideally, the homogeneous reactions would be carried out in continuous flow mode with the catalyst remaining in the reactor at all times, whilst the substrates and products flow over the catalyst. The system we have been studying is one where the catalyst is dissolved in a thin film of an ionic liquid, and this is supported within the pores of a microporous silica. This supported ionic liquid phase (SILP) catalyst is then placed in a tubular flow reactor, similar to that used for heterogeneous reactions. The raw materials are then injected into the rig, pass through the reactor and the products and the raw materials that have not reacted are collected at the other end of the rig. Supercritical CO₂ is used to transport the raw materials and products along the catalyst bed, allowing a continuous flow mode with low leaching for both the catalyst and the ionic liquid. We have applied this procedure first to alkene metathesis catalysed by a ruthenium complex that has been especially designed to dissolve in 1-butyl-3-methyimidazolium triflamide (BMIM NTf₂), which was used as ionic liquid. Activity is observed for the ring closing metathesis of diethyl 2,2-diallylmalonate, but the catalyst is not stable, only allowing about 300 turnovers. This instability is attributed to the formation of Ru=CH₂ moieties, which dimerise to an inactive species. More success is achieved with internal alkenes such as 2-octene and especially methyl oleate. Self metathesis of methyl oleate continues for >10.000 turnovers over 10 h, with only small decreases in activity. The cross metathesis of methyl oleate with dimethyl maleate has also been studied. Cross metathesis dominates in the early stages of the reaction but the cross metathesis products diminish with time. Surprisingly, the catalyst does not deactivate since self metathesis of methyl oleate continues. The phase behaviour of the reaction was monitored and gave us an insight into the reasons for this change in selectivity. Methoxycarbonylation reactions in continuous flow proved to be a much more difficult process than the previous metathesis reactions. Higher catalyst loading was needed to reduce the reaction times. The first continuous flow reactions showed conversion predominantly, if not exclusive, of 1-octene isomerised products. The presence of ionic liquid (IL) in the SILP system was essential, otherwise the catalyst leached out of the reactor very quickly. Batch reactions showed that none of the studied parameters (absence of presence of either BMIM NTf₂, OMIM NTf₂, silica or CO₂) had any influence on the reaction, but when observing the results it was noticed that the reactions that gave the best results were performed in a close range of pressures between 55 and 70 bar, indicating that the reaction might be pressure dependent. Further continuous flow reactions in that range of pressures gave the best conversions to methoxycarbonylation products. Unfortunately, at these pressures and without CO₂ the reaction took place in a liquid phase and thus substantial IL and catalyst leaching was observed, causing a decrease in conversion and making the reaction not feasible under continuous flow conditions. Nevertheless, the catalyst system composed of Pd, 1,2-bis(di-tert-butylphosphinomethyl)benzene (DTBPMB) ligand and acid showed an excellent linear selectivity, usually higher than 90%, both in batch and continuous flow reactions. Hydrogenation reactions of dimethyl itaconate (DMI) and dibutyl itaconate (DBI) using Rh-MeDuPhos showed excellent activity and enantioselestivity in a batch mode. In a continuous flow mode IL leaching caused a decrease of the enantioselectivity. The best results were obtained when CO₂ was not present. On the other hand, the absence of CO₂ implied that the reaction was performed in a liquid phase and therefore abundant IL leaching was observed along with a decrease in the enantioselectivity. A study of the reaction behaviour when using CO₂ in its different phases (liquid, gas and supercritical) was carried out. Under supercritical conditions IL leaching was avoided but conversion was not observed. When using CO₂ in its liquid phase some conversion was observed and full conversion occurred in its gas phase, but abundant IL leaching caused a decrease in the enantioselectivity. Better results were obtained by immobilising a Rh-MeDuPhos catalyst onto alumina via heteropoly acids. The effect of pressure, H₂ flow and substrate flow were studied and the stability of the reaction in the long term was examined under optimal conditions. More than 12,900 TONs were achieved after 4 days of continuous reaction, with conversions higher than 90% during the 3 first days and e.e. higher than 99% during the 2 first days.

Investigation of structure and disorder in inorganic solids using solid-state NMR

Mitchell, Martin R. — Wed, 26 Jun 2013 00:00:00 GMT

Abstract: The use of solid-state NMR and DFT calculations to study Y₂Sn[subscript(x)]Ti[subscript(2-x)]O₇, Y₂Sn[subscript(x)]Zr[subscript(2-x)]O₇ and Y₂Ti[subscript(x)]Zr[subscript(2-x)]O₇, materials with applications for the safe encapsulation of radioactive actinides is investigated. As a result of cation or anion disorder in these materials, NMR spectra are often complex and difficult to interpret. Therefore, an investigation using a range of NMR active nuclei and measurement of a variety of NMR parameters (isotropic chemical shift, δ[subscript(iso)]; span, Ω and quadrupolar coupling, C[subscript(Q)]) were used to provide a full and detailed picture of each material. The measurement of Ω in these disordered compounds with multiple resonances in the NMR spectra, required the use of 2D CSA-amplified PASS (CAPASS) experiments to enable the separation of each of the spinning sideband manifolds. An experimental assessment of the CAPASS experiment showed that although low ν₁/Ω[subscript(Hz)] ratios (as found in ⁸⁹Y NMR) resulted in distortions in the spectra obtained, a modified fitting procedure could be utilised to compensate for this fact, which allowed the accurate measurement of Ω. Despite the difficulties in acquiring the ⁸⁹Y NMR spectra, they were found to be the most informative of the NMR-active nuclei available. ¹¹⁹Sn NMR spectra, although much easier to acquire than ⁸⁹Y, were more complex and harder to analyse, owing to the overlapping resonances. Therefore, ¹¹⁹Sn NMR could only be used to confirm or support the results obtained using ⁸⁹Y NMR. Although ¹⁷O NMR was found to be useful, a full study could not be implemented due to the lack of ¹⁷O enriched samples; an area where future investigation may prove fruitful. Finally, [superscript(47/49)]Ti and ⁹¹Zr NMR spectra were found to be the most difficult to acquire due to their low receptivities and the quadrupolar broadened lineshapes, and as a result, little additional information was obtained. As a result of this analysis, for the Y₂Sn[subscript(x)]Ti[subscript(2-x)]O₇ pyrochlore solid solution, using primarily ⁸⁹Y δ[subscript(iso)] and Ω, and additionally confirmed with ¹¹⁹Sn δ[subscript(iso)], it was found that the Sn and Ti cations were randomly ordered throughout the B-sites. Additionally, ⁸⁹Y Ω could be used to obtain approximate Y-O[subscript(48f)] and Y-O[subscript(8b)] bond lengths for each type of Y environment. The study of Y₂Sn[subscript(x)]Zr[subscript(2-x)]O₇ using ⁸⁹Y NMR showed that although the end members were single phase, pyrochlore (Y₂Sn₂O₇) or defect fluorite (Y₂Zr₂O₇), the intermediate compositions were mostly two phase mixtures, consisting of an ordered pyrochlore (with an average formula of Y₂Sn₁.₈Zr₀.₂O₇) and a disordered phase, where the proportions of the pyrochlore and disordered phases decreased and increased, respectively, with the Zr content. Additionally, although the coordination states of the Y and Sn cations were easily determined using ⁸⁹Y and ¹¹⁹Sn NMR, respectively, the coordination states of the Zr cations could not be confirmed directly by ⁹¹Zr NMR. However, using indirect analysis from results obtained with ⁸⁹Y and ¹¹⁹Sn NMR, it was determined that 6 coordinate Zr was present in each composition, and it was always present in a greater proportion than 8 coordinate Zr. Finally, although ⁸⁹Y NMR spectra of Y₂Ti[subscript(x)]Zr[subscript(2-x)]O₇ were extremely difficult to analyse, it was tentatively proposed that they could be similar to Y₂Sn[subscript(x)]Zr[subscript(2-x)]O₇ due to some similarities observed between the spectra.

Environmental effects in quantum chemistry : QM/MM studies of structures, NMR properties and reactivities in extended systems

Bjornsson, Ragnar — Fri, 30 Nov 2012 00:00:00 GMT

Abstract: Computational modelling of chemical systems is most easily carried out in the vacuum for single molecules. Accounting for environmental effects accurately in quantum chemical calculations, however, is often necessary for computational predictions of chemical systems to have any relevance to experiment. This PhD thesis focuses on accounting for environmental effects in quantum chemical calculations by quantum mechanics/ molecular mechanics (QM/MM) approaches, taking on diverse examples from the solid state, the liquid phase and the protein environment. The methods are applied to compute a variety of properties from transition metal NMR properties of molecular crystals and enzymes, via conformational properties of zwitterions in aqueous solution, to an intramolecular amidation reaction in peptides. Chapter 3 concerns QM/MM calculations of molecular properties in the solid state, both molecular crystals and metalloenzymes, with a focus on transition metal chemical shift and EFG properties. We demonstrate that solid-state effects on such properties in molecular crystals can be accounted for by a simple general black-box QM/MM approach. We also describe preliminary QM/MM calculations of 51V anisotropic NMR properties for a vanadium-dependent enzyme. In Chapter 4 the focus is on solvent effects on the conformational preference of a small zwitterionic molecule, 3F-γ-aminobutyric acid (3F-GABA), calculated using QM/MM molecular dynamics simulations. NMR spin-spin coupling constants in solution are also calculated. Our simulations highlight the difficulty of accounting for solvation effects well enough to achieve agreement with experimental observations. Chapter 5 concerns the reaction mechanism of an intramolecular amidation reaction in a bacterial peptide, predicted by QM/MM calculations. We predict a reaction mechanism that accounts well for the experimental observations both for the wild-type and mutants. We demonstrate that environmental effects can often be satisfactorily accounted for by QM/MM approaches, thus helping to bridge the gap between theory and experiment.

A study of metal-organic frameworks for the storage and release of medical gases

Allan, Phoebe Kate — Fri, 30 Nov 2012 00:00:00 GMT

Abstract: This thesis presents a study of the interaction of medical gases nitric oxide, carbon monoxide and hydrogen sulfide with metal-organic framework materials. Most analysis is performed via single-crystal X-ray diffraction and Rietveld and pair distribution function analysis of powder X-ray diffraction data. A background to the field and the experimental methods used are described in Chapters 1 and 3. The use of a specially designed static environmental gas cell to assess the role of coordinatively unsaturated metal sites in nitric oxide storage in Co-CPO-27 via in situ single-crystal structure determination is described in Chapter 4. Nitric oxide was shown to bind to the Co-centre of the material in a bent geometry in an approximately 1:1 Co:NO ratio. A multi-technique study was conducted on the framework Cu-SIP-3 in Chapters 5 and 6, utilising both single-crystal X-ray diffraction and pair distribution function analysis to obtain complementary information about atomic movements during a thermally active single-crystal to single-crystal transition. These techniques were further applied during in situ gas-loading experiments on the same framework. Application of the pair distribution function technique to metal-organic frameworks is described in Chapter 7, where refinements of both known and unknown metal-organic framework structures are presented. Partial PDFs are used to determine the secondary building block of a new metal-organic framework and verify the structural solution determined from powder X-ray diffraction data. Chapter 8 presents the study of the M-CPO-27 isostructural series for the adsorption and release of hydrogen sulfide and carbon monoxide. Gas adsorption isotherms and release measurements are correlated with the structure of the Ni-CPO-27 hydrogen sulfide-adduct determined by both powder X-ray diffraction and differential pair distribution function methods which reveal the open-metal site as the primary adsorption interaction in the material. The hydrogen sulfide released from Zn-CPO-27 is determined to be biologically active through vasodilatation experiments.

Synthesis, characterisation and adsorption properties of metal-organic frameworks and the structural response to functionalisation and temperature

Mowat, John P.S. — Sun, 01 Jul 2012 00:00:00 GMT

Abstract: The synthesis of a scandium aluminium methylphosphonate ScAl₃(CH₃PO₃)₆ isostructural to the aluminium methylphosphonate AlMePO-α and with permanent microporosity is reported here for the first time. Structural characterisation of three lanthanide bisphosphonate structures (I,II,III) with the light lanthanides and N,N’-piperazine bis-(methylenephosphonic acid) and its 2-methyl and 2,5-dimethyl derivatives is described. The framework of structure type I shows considerable flexibility upon dehydration with a symmetry change from C2/c, a = 23.5864(2) Å, b = 12.1186(2) Å, c = 5.6613(2) Å, β = 93.040(2)˚) in the hydrated state to P2₁/n, a = 21.8361(12) Å, b = 9.3519(4) Å, c = 5.5629(3) Å, β = 96.560(4)˚ after dehydration. This cell volume reduces by 27% on dehydration and is accompanied by a change in the conformation of the piperazine ring from chair to boat configuration. The structures of type I (hydrated and dehydrated) were refined against synchrotron powder X-ray diffraction data. Despite the reversible hydration and flexibility, the structures possess no permanent porosity. Investigation of the solvothermal chemistry of scandium carboxylates identified routes to 7 framework structures 5 of which were previously unreported in the scandium system. Lower temperature solvothermal reactions using terephthalic acid (80 - 140°C using dimethylformamide and diethylformamide) yielded two scandium terephthalates, MIL-88B(Sc) and MIL-101(Sc), identified by laboratory X-ray powder diffraction. Whereas higher temperature (160 – 220°C), reactions gave MIL-53(Sc) and Sc₂BDC₃. Further study with the tri- and tetra-carboxylate linkers, trimesic acid, 3,3’,5,5’-azobenzenetetracarboxylic acid and pyromellitic acid yielded MIL-100(Sc), Sc-ABTC and Sc₄PMA₃ respectively. Structural identification of MIL-100(Sc) and Sc-ABTC was performed by means of X-ray powder diffraction analysis and of Sc₄PMA₃ by single crystal X-ray diffraction. The structure of a small pore scandium terephthalate Sc₂BDC₃ was investigated as a function of temperature and of functionalization. In situ synchrotron X-ray diffraction data, collected on a Sc₂BDC₃ in vacuo, enabled a phase change from orthorhombic Fddd to monoclinic C2/c and the associated structural effects to be observed in detail. The orthorhombic structure displayed a negative thermal expansivity of 2.4 × 10⁻⁵ K⁻¹ over the temperature range 225 – 523 K which Rietveld analysis showed to be derived from carboxylate group rotation. Motion within the framework was studied by ²H wide-line and MAS NMR on deuterated Sc₂BDC₃ indicating π flips can occur in the phenyl rings above 298 K. The effects of functionalization on the Sc₂BDC₃ framework were investigated by reactions using the 2-amino- and 2-nitroterephthalic acid and gave evidence for a strong structural effect resulting from inclusion of the functional groups. The structure of Sc₂BDC₃ and the functionalised derivatives were solved using Rietveld analysis on synchrotron X-ray powder diffraction data. Sc₂(NH₂-BDC)₃ was solved using the orthorhombic Sc₂BDC₃ framework starting model and, over the temperature range studied, stayed orthorhombic Fddd. Sc₂(NO₂-BDC)₃, was shown to be monoclinic C2/c over the same temperature range, a result of the steric effects of the bulky –NO₂ group in a small pore framework. Partial ordering of the functional groups was observed in both Sc₂(NH₂-BDC)₃ and Sc₂(NO₂-BDC)₃. The strength of interaction for the Sc₂(NH₂-BDC)₃ with CO₂ was higher than that of the parent Sc₂BDC₃ due to the strong –NH₂•••CO₂ interaction. Despite the inclusion of a relatively large –NO₂ group along the walls of a channel ~4 Å in diameter the Sc₂(NO₂-BDC)₃ still showed permanent microporosity to CO₂ (2.6 mmol g⁻¹) suggesting that there must be some motion in the -NO₂ group to allow the CO₂ molecules to diffuse through the channels. The scandium analogue of the flexible terephthalate MIL-53, a competitive phase in the synthesis of Sc₂BDC₃, was prepared and characterised by Rietveld analysis on synchrotron X-ray powder diffraction data using a combination of literature structural models and models obtained from single crystal X-ray diffraction experiments. Experimental solid state ⁴⁵Sc, ¹³C and ¹H NMR data combined with NMR calculations on the structural models produced from diffraction analysis were used to identify the hydrated (MIL-53(Sc)-H₂O), calcined (MIL-53(Sc)-CAL) and high temperature (MIL-53(Sc)-HT) structures of MIL-53(Sc). Further to this the 2-nitroterephthalate derivative, MIL-53(Sc)-NO₂, was prepared and characterised using single crystal X-ray diffraction. The adsorptive properties of the parent terephthalate and the functionalised derivative were compared and in both cases showed a breathing behaviour, exemplified by steps in the adsorption isotherms. MIL-53(Sc)-CAL was found to possess a closed pore configuration in the dehydrated state, a previously unreported structural form for the MIL-53 series, and its presence can be observed in the low pressure region of the CO₂ adsorption isotherm as a non-porous plateau. The selectivity and separation properties of two MOFs, the nickel bisphosphonate, STA-12(Ni) and the scandium carboxylate, Sc₂BDC₃ were measured using breakthrough curves on mixtures of CH₄ and CO₂. The results showed both materials to be highly selective in the adsorption of CO₂ over CH₄. Column testing using a PLOT column of STA-12(Ni) and a packed column of Sc₂BDC₃ showed promising preliminary results with STA-12(Ni) displaying effective, baseline separation on low boiling point hydrocarbon mixtures (C1 – C4) while the smaller pore channels of Sc₂BDC₃ were effective in the size selective separation of higher boiling point branched and straight-chain hydrocarbons (C5 – C7).

Material characterisation, phase transitions, electrochemical properties and possible fuel cell applications of Nd₂₋ₓPrₓCuO₄ and Nd2-x-y LayPrₓCuO₄ systems

Patabendige, Chami N.K. — Tue, 13 Mar 2012 00:00:00 GMT

Abstract: The well-known lanthanide cuprates exist in two principal forms, T and T´, which behave as p-type and n-type conductors, respectively. In order to understand the structural properties and crystal chemistry from the T to T´ phase, the Nd₁.₈₋ₓLaₓPr₀.₂CuO₄ (NLPCO) system was studied varying the La substitution ratio (0≤x≤1.8) and then characterised using high temperature X-ray powder diffraction. From analysis of the X-ray diffraction patterns obtained at room temperature, there are clearly five distinguishable regions for the NLPCO system. They are, (1) monophasic T´ solid–solution (2) two phase mixture T´ + T´´ (3) monophasic T´´solid–solution (4) two phase mixture T´´ + O and finally (5) monophasic O phase solid–solution. The T´´ form has previously been suggested as an ordered form of T´; however here we show via high temperature X-ray diffraction studies that it is a non-transformable metastable phase formed on quenching of the T phase via an orthorhombically distorted variant. Also neutron diffraction and selected area electron diffraction (SAED) studies confirmed that the T ´´phase is 4- fold Cu coordinated.The structural, magnetic and electrical properties of this NLPCO series have been investigated for the selected compositions using X-ray diffraction, magnetization measurements, thermal analysis and conductivity measurements. The aim of the second half of this work was to discover the basic high temperature electrical characteristics of Nd₂₋ₓPrₓCuO₄ and investigate how this matches with those required for components on the SOFC cathode side to identify which dopant level shows highest conductivity and whether it is stable at different temperatures. The idea was to make a new concept in SOFC cathodes and current collector development, using n-type conductors instead of p- type conductors and to try to produce a high conductivity material which is stable under the chemical and thermal stresses that exist while under load that can be used in cathode or current collector applications. The Nd₂₋ₓPrₓCuO₄ (NPCO) series has been studied over a range of dopant levels (x=0.15 - 0.25) and maximum conductivity of 86.7 Scm⁻¹ has been obtained for the composition where x = 0.25. Also NPCO shows n-type semiconductor behaviour which gives operational advantages when operating at mild oxygen deficiency. AC impedance studies have been carried out on symmetrical cells to investigate the performance of NPCO as a cathode material. These studies mainly focused on polarization resistance and the activation energies of the cells. Low Rp values and low activation energies are obtained for a composite cathode compared to pure cathode material. Two configurations of NPCO as cathode materials were tested, pre-fired and in-siu fired. Pre-fired NPCO exhibited better performance than in-situ fired NPCO. Both in-situ and pre-fired current collecting NPCO still showed lowest activation energies which suggest good catalytic activity. From all of these studies, it is evident that the praseodymium doped neodymium cuprate material shows considerable promise as a potential cathode material for solid oxide fuel cell applications.

Selective incorporation of the C-F bond as a conformational tool in quadruplex DNA ligand design

Smith, Daniel L. — Wed, 15 Aug 2012 00:00:00 GMT

Abstract: Chapter 1 provides a general introduction to organofluorine chemistry and focuses on recent developments in fluorination techniques. It also details how the C–F bond influences conformational and physiochemical properties of organic molecules. Chapter 2 highlights the biological role of the telomere, telomerase and quadruplex DNA in cells. It discusses the inhibition of telomerase with small molecules that stabilise quadruplex DNA as a treatment for cancer. An overview of the development of structurally related telomerase inhibitors and recent X-ray crystallographic structural data with BSU6039 and BRACO-19 telomeric DNA is presented. Chapter 3 discusses the synthesis of fluorinated BSU6039 analogues for the investigation of the conformational effects of fluorine in 5-membered rings and its influence on binding with quadruplex DNA. These compounds have been successfully co-crystallised with telomeric DNA and their relative stabilisation of telomeric DNA has been assessed. The latter half of this chapter focuses on the co-crystal structures between (S,S)- and (R,R)-144 with Oxytricha nova telomeric DNA, discussing the key differences between the two stereoisomers. Chapter 4 details the synthesis of fluorinated BRACO-19 analogues. The syntheses of such fluorinated analogues were achieved through a base mediated coupling between 3,6-diaminoacridone and an α-fluorinated-β-amino ester. The α-fluorinated-β-amino ester was synthesised through a deoxyfluorination-mediated approach, using the stereochemistry of natural amino acids. Chapter 5 describes the stereo- and regio- selectivity of deoxyfluorination reactions with dipeptides bearing the β-amino alcohol functionality. Understanding this selectivity enabled the development of a method towards α-fluorination of tertiary amides. The application of this fluorination method with an orthogonally protected tertiary amide is described.

Oligonucleotide based ligands in homogeneous transition metal catalysis

Eichelsheim, Tanja — Fri, 30 Nov 2012 00:00:00 GMT

Abstract: Catalysis plays an important part in our society. Numerous transition metal catalysts have been developed which can convert many different substrates in a wide range of reactions. Catalysis also plays an important role in nature and therefore special catalysts, enzymes, have evolved over time. Enzymes are tremendously efficient giving high yields and selectivities both regio and chemical but have a limited substrate and reaction scope. It was speculated that by combining the two, an ideal catalyst can be obtained. We planned to achieve this by introducing a transition metal, the catalytic centre, into the chiral environment of a double helical oligonucleotide. The transition metals were introduced by coordinating them to a ligand which was located in the chiral environment of a double helix. The ligand was either covalently bound (Chapter 2) or non-covalently bound (Chapter 3) to the oligonucleotide (Figure 1). Figure 1: A) covalent introduction of a transition metal into a nucleotide B) non-covalent introduction of a transition metal into a nucleotide For the covalent approach a phosphine ligand was chosen. A nucleoside was modified with an alkyne to which a phosphine moiety could be coupled via the copper catalysed 1,3-dipolar cycloaddition. The modified nucleoside was incorporated into an oligonucleotide before attempting to attach the phosphine moiety. The monomer was used as a ligand in allylic substitution and hydroformylation. In the non-covalent approach polyamide minor groove binders were functionalised with an amine linker. Phosphine moieties were connected via amide bond formation. Although the coupling worked effortlessly the phosphines oxidised during purification therefore dienes were also investigated.

Revealing the art and science of self-replicating rotaxanes

Hassan, Nurul Izzaty — Sun, 01 Jan 2012 00:00:00 GMT

Abstract: This Thesis reveals the strategies for the construction and replication of mechanically interlocked molecules, particularly rotaxanes, which consist of a macrocyclic ring that encircles a linear component terminated with bulky groups. The work highlights our recent research activities in exploring the recognition-mediated synthesis of this class of interlocked molecule and its amplification by replication. Our starting point is the minimal model of self-replication. The introductory chapters (Chapter 1 and 2) provide some background and significance to the study, which presents comprehensive review of the published work carried out in the area of self-replication with existing examples from biomimetic and discrete synthetic assemblies. In Chapter 1, we mainly discuss the do and the donʼts in designing successful self-replicating systems based on our own experience in previous work. Our chief concerns in Chapter 2 are the understanding of the chemistry of the mechanical bond and the synthesis of rotaxanes by three means of approaches (clipping, threading and stoppering, and slippage). Attractive and useful examples are illustrated for each mechanism. Moreover, the definition and the roles of templated-synthesis of interlocked molecules are described. Recent advances in the understanding of the nature of the mechanical bond have also been introduced into molecular electronic devices. Emphasis is placed in Chapter 3 upon the essential requirements for the design of self-replicating rotaxanes, namely a recognition site, a reactive site and a binding site. These aspects are explained in the designed minimal model chosen in the past (Replication model 1) and the alternate proposed models (Replication model 2 and Replication model 3). The importance of high association constant to provide substantial amount of pseudorotaxane [L•M] precursors is exemplify in the simple kinetic model of rotaxane formation. The advantages and disadvantages of each independent minimal replication model are also summarized. In the self-replicating rotaxane frameworks, the principal strategy involves a selection of an efficient macrocycle to accommodate the guest unit. Thus, Chapter 4 exclusively describes the design, synthesis and binding properties of a series of macrocycle incorporating the hydrogen bond donors and/or hydrogen bond acceptors motif. In particular, the guests were designed and synthesised based on the mutual interactions with the macrocycle framework and the binding experiments is described in details. An account is provided of the problems faced in the synthetic attempts towards the formation of these macrocycles. The novel macrocycle MEU demonstrated a deficient binding performance with amide and urea compounds, and thus abandoned in later stages. The developed macrocycle MDG and MP have been selected as our workhorse macrocycles, which successfully increase the binding strength in the pseudorotaxanes formation. We have learnt that the association constant, Kₐ can be manipulated by the changing the binding site of the guest or redesign the framework of the macrocycle itself. An exhaustive investigation of the performance of self-replicating rotaxanes focuses on Replication model 1 is demonstrated in Chapter 5. It was evident now that as a consequence of low Kₐ, a substantial amount of thread is present over rotaxane. The implementation of the simple kinetic model of rotaxane formation is prevailed through out this chapter. The position of the central reversible equilibrium in this model effectively resulted in a different reactivity of thread and rotaxane. Therefore, it is concluded that the ratio of rotaxane and thread is sensitive to both the association constant for the [L•M] complex and to the ratio of k[subscript(rotaxane)]/k[subscript(thread)]. The key marker for the efficiency of the rotaxane-forming protocol is the ratio of rotaxane, R to thread, T. In previous chapter, the Kₐ for the [L•M] complex was around 100 M⁻¹ and k[subscript(T)] = 3 k[subscript(R)], which led to an unacceptably small [R]/[T] ratio. We demonstrated for the first time in Chapter 6, that it is possible to manipulate the Kₐ for the [L•M] complex by means of a change in temperature. Yields of a rotaxane can be improved by employing a two-step capture protocol. Cooling a solution of the linear and macrocyclic components required for the rotaxane increases the population of the target pseudorotaxane, which is then captured by a rapid capping reaction between an azide and PPh₃. The resulting iminophosphorane rotaxane can then be manipulated synthetically at elevated temperatures. Following this, these imines could be reduced readily to afford the stable amine rotaxane. Replication model 2 is subsequently proposed as alternate replication framework in Chapter 7, which realised significant advantages over the first model. A number of designs of a potential self-replicating rotaxane have been fabricated in order to integrate self-replication with the formation of rotaxanes. An account is provided of the problems faced with the unanticipated larger cavity of the newly prepared acid recognition macrocycles, and hence, force us to search for a new scaffold of the nitrone structures. Pleasingly, a substantial amount of rotaxane was present, mostly as trans diastereoisomer. It is concluded that the resulting rotaxane structures may be self-replicating through the recognition-mediated pathways from the preliminary kinetic experiments. Nonetheless, the remainder of the full kinetic analysis are prevented given a small quantity of the necessary building block. Chapter 8 reveals our recent efforts to demonstrate the notions behind the final replication scheme, Replication model 3. We have become aware that the reactive site must be placed sufficiently far away from the binding site to inhibit the remote steric effect through the proximity of the macrocyclic component. The design of novel nitrone structures is described in details. We bring together conclusions that can be drawn from three designated replication models in Chapter 9. Experimental and synthetic procedures of the target compounds and appropriate spectroscopic analysis of the products are elaborated in Chapter 10.

Soft routes to inorganic frameworks via assembly of molecular building blocks

Kandasamy, Balamurugan — Sun, 01 Jan 2012 00:00:00 GMT

Abstract: The assembly of mononuclear and polynuclear molecular building blocks has been investigated as a route to extended metal oxide structures. Various [MX[subscript(y)]]ⁿ⁻ (X = Cl, OMe, OH) and [(RO)M’M₅O₁₈]³⁻ (R = MeO, M’ = Sn, M = W) building blocks have been synthesised. Controlled hydrolysis has been explored for transition and main group metal hexahalides [MCl₆]ⁿ⁻ M=Ti, Sn using ¹⁷O enriched water. An attempted synthesis of [Me₃NCH₂Ph] [Sn(OMe)₆] gave the dinuclear product [Me₃NCH₂Ph] [Sn₂(OMe)₉]. Variable temperature ¹H NMR studies revealed exchange between terminal and bridging alkoxides and the limiting spectrum is consistent with solid state structure. 2,6-lutidinium hydrochloride was synthesised and used to chlorinate the metal alkoxides {M(OR)[subscript(n)]} (M = Nb). A route to monochloro niobium alkoxide {NbCl(OMe)₄} was developed and variable temperature ¹H NMR spectroscopy studies of {NbCl(OMe)₄} in different solvents revealed exchange between bridging and terminal alkoxides and also suggested the presence of different structural isomers in solution. A novel heterometallic Lindqvist type of POM containing Sn has been successfully synthesised by using controlled hydrolytic aggregation. A mixture of (TBA)₂WO₄, WO(OMe)₄ and {Sn(O[superscript(t)] Bu)₄} was partially hydrolysed in a non-aqueous solvent to give (TBA)₃[(MeO)SnW₅O₁₈] (1). ¹¹⁹Sn NMR INEPT and selective tin decoupled proton NMR experiments have been carried out to determine the axial and equatorial ²J {¹¹⁹Sn*¹⁸³W} coupling constants and to estimate ³J{¹¹⁹Sn¹H} and ³J{¹¹⁷Sn¹H} coupling constants. The electrochemistry of (1) was studied by cyclic voltammetry (CV), and was shown to undergo a reversible one electron reduction close to the solvent limit. Hydrolysis of [(MeO)SnW₅O₁₈]³⁻ produced [(OH)SnW₅O₁₈]³⁻ (2) which is stable in the solid state but in solution undergoes a condensation reaction to give [(µ- O)(SnW₅O₁₈)₂]⁶⁻ (3). The chloro stannotungstate [ClSnW₅O₁₈]³⁻ (4) was also obtained during the synthesis of (1) and (2). Compounds (2) and (4) are crystallographically isostructural and Sn hetero site was disordered over all six metal positions in both anions. The redox properties of (4) were studied by CV and showed an irreversible reduction peak at -1.67 V. Compound (4) is stable in air and did not react with H₂O or PhOH but did react with MeOH or NaOMe to give (1). It also reacted with diisopropylamine (DIPA) to produce the H-bonded aggregate [(Prⁱ₂NH₂)₂(µ-O)(SnW₅O₁₈)₂]⁴⁻. The adduct structure is related to a recently characterised titanium analogue [(µ-O)(TiW₅O₁₈H)₂]⁴⁻ , which forms the H-bonded THF adduct [(µ-O)(TiW₅O₁₈H)₂(THF)]⁴⁻ . 2D-¹H EXSY NMR studies of the mixtures of (1) and MeOH did not show any exchange peaks between (1) and methanol which demonstrates that exchange is slow but reactivity studies of (1) have been carried out with various alcohols and phenols to give substituted products. Sterically smaller alkyl groups gave trans disordered structures, but no disorder is present in structures of anion with bulkier aliphatic alkoxide and aryloxide groups. Hydrogen bonding was observed between the POM cage and pendant phenolic OH groups All the alkyl and aryloxido derivatives have been characterised by single crystal X-Ray diffraction, ¹H and multinuclear NMR spectroscopy, infrared spectroscopy and CHN analysis. Preliminary studies to explore the immobilisation of metal alkoxides [Ti(OPrⁱ )₄] and (1) on ~30% OH functionalised Si(111) surfaces have been carried out. The attempted covalent immobilisation of (1) to Si(111) surfaces appeared to be successful from Atomic Force Microscopy (AFM) measurements.

Lewis base organocatalysts for carboxyl and acyl transfer reactions

Woods, Philip A. — Mon, 15 Aug 2011 00:00:00 GMT

Abstract: This thesis is concerned with the use of Lewis base organocatalysts for carboxyl and acyl transfer reactions. Chapter 1 introduces the ability of organic Lewis bases other than DMAP-type to promote a range of asymmetric O-, N- and C-acyl transfer processes. This chapter summarizes the developments in catalyst architectures and approaches to these processes that have been disclosed to date in this dynamic area of asymmetric organocatalysis. Chapter 2 introduces studies into the synthesis of pyrrolyl carbonates via cyclization of gamma-amino esters and ring closing metathesis (RCM) of N-allylamides. The ability of a range of Lewis bases to promote the regioselective O- to C-carboxyl transfer of pyrrolyl carbonates is also presented. Chapter 3 introduces isothiourea DHPB as an efficient Lewis base catalyst for the diastereoselective C-acylation of silyl ketene acetals with anhydrides or benzoyl fluoride, giving 3-acyl-3-aryl or 3-acyl-3-alkylfuranones in excellent yields and stereoselectivities (up to 99:1 dr). Chapter 4 introduces C(2)-aryl substituted DHPB derived-isothioureas as efficient Lewis base catalysts for the enantioselective C-acylation of silyl ketene acetals with propionic anhydride, giving 3-acyl-3-aryl or 3-acyl-3-alkylfuranones in good isolated yields and enantioselectivities (up to 98% ee). This chapter also demonstrates that these chiral isothioureas are required for high reactivity and asymmetry in related acylation manifolds. Chapter 5 presents and overall conclusion for chapters 2,3 and 4. Chapter 6 contains full experimental procedures and characterization data for all compounds synthesized in Chapters 2, 3 and 4.

Isothiourea-promoted O- to C-carboxyl transfer reactions

Joannesse, Caroline — Wed, 30 Nov 2011 00:00:00 GMT

Abstract: This thesis describes an extensive investigation of the O- to C-carboxyl transfer of oxazolyl carbonates using isothioureas as Lewis base catalysts. The structural requirements of simple bicyclic amidines and isothioureas to promote this transformation have been investigated, showing that the catalytic efficiency and product distribution of these reactions are markedly affected by the catalyst structure. The optimal isothiourea catalyst was efficiently applied to the rearrangement of a wide range of oxazolyl, benzofuranyl and indolyl carbonates. The structural motif of tetrahydropyrimidine-based isothioureas has then been evaluated in order to develop an asymmetric variant of the O- to C-carboxyl transfer of oxazolyl carbonates. A number of chiral isothioureas bearing stereodirecting groups in C(2) and/or C(3) have been synthesised and used in this rearrangement, showing that a C(2)-stereodirecting unit is essential for high enantioselectivity, with an additional C(3)-substituent increasing the reactivity. The optimal chiral C(2)-substituted isothioureas identified are general and efficient asymmetric catalysts for O- to C-carboxyl transfer of oxazolyl carbonates, generating a quaternary stereocentre with high enantioselectivity (up to 94% ee). The origin of the enantioselectivity of this process has been probed mechanistically and rationalised computationally. Having gained an insight into the structural motifs of isothioureas required to impart good catalytic activity and asymmetric induction in the O- to C-carboxyl transfer of oxazolyl carbonates, the mechanism of this reaction was probed using kinetic and mechanistic experiments. ¹⁹F NMR spectroscopic analysis allowed the evolution of product, by-product and intermediate throughout the reaction to be monitored while a number of crossover and stability experiments gave additional information about the catalytic cycle. Extension to a related system has been demonstrated with the O- to C-carboxyl transfer of furanyl carbonates, producing a mixture of α- and γ-butenolides depending on the nature of the Lewis base employed. DMAP gives a mixture of both regioisomers with a preference for the α-regioisomer, while NHCs lead predominantly to the γ-regioisomer. Chiral isothioureas have been used to promote this rearrangement, giving the major α-regioisomer with good enantioselectivity (up to 83% ee). To quantify the different reactivities observed with these isothioureas, their nucleophilicities and Lewis basicities using the stopped-flow technique have been determined. Finally, model studies toward the synthesis of the natural product calcaridine A, using the methodology developed herein, have been investigated.

Investigations into the role of α-amino acids as chiral modifiers for Ni-based enantioselective heterogeneous hydrogenation catalysts

Wilson, Karen E. — Wed, 30 Nov 2011 00:00:00 GMT

Abstract: The hydrogenation of β-ketoesters over chirally modified Ni catalysts is a celebrated and thoroughly researched example of an enantioselective heterogeneous catalytic reaction. Enantioselective heterogeneous processes, although extremely attractive in terms of fewer complications in the separation of products from the catalyst, are hindered in their viability as industrial applications due to the lack of detailed knowledge on how chirality is conferred to the metal surface. Surface science techniques have afforded substantial progress into determining mechanisms between modifier, reactant and catalyst to explain the source of enantioselectivity of the system. In this study, a combination of solution and ultra-high vacuum (UHV)-based experiments allow a more realistic interpretation of the surface chemistry underpinning the catalytic reaction as the key step in achieving enantioselective performance is the adsorption of chiral modifiers from solution. The behaviour of (S)-aspartic acid and (S)-lysine on Ni{111} and their interaction with the prochiral β-ketoester methylacetoacetate is investigated in this study to understand their potential as chiral modifiers for the system. In UHV, scanning tunnelling microscopy (STM), reflection absorption infrared spectroscopy (RAIRS), and temperature programmed desorption (TPD) are used to analyse the conformation and order of the amino acids on the metal, and their thermal stability. Additionally, liquid-solid interface RAIRS and X-ray photoelectron spectroscopy (XPS) are used to examine the modified Ni surface, prepared under aqueous conditions, to give an accurate representation of the catalytic studies. It has been found highly likely that, for (S)-aspartic acid modified Ni{111}, enantioselective sites exist at step or step/kink defects, formed by corrosive leaching of the Ni substrate. Conversely, lysine appears to bind with a high sticking probability to Ni, in the form of lysine islands, and does not appear to etch the Ni chirally. Finally, similar experiments have been carried out on Au{111}, where lysine was found to chiral restructure the surface and form nanofingers, and 2D Ni clusters grown on Au{111} in order to investigate the formation of possible metal-organic frameworks.

Synthetic studies into phosphorus and arsenic peri-substituted naphthalene

Somisara, Dhanasekara M. U. K. — Wed, 08 Jun 2011 00:00:00 GMT

Abstract: The rac- and meso- forms of “all carbon” 1,2-diphosphonium dications with the naphthalene -1,8-diyl backbone were synthesised in good yields and purity by double alkylation of the parent diphosphine (1,2-diphenyl-1,2-diphosphaacenaphthene) using strong alkylating agents. Pure rac- and meso- forms of 1,2-diphosphoniums were obtained diastereospecifically by using methyl triflate and trimethyloxonium tetrafluoroborate respectively. It was found that the equilibrium between the rac- and meso- forms at room temperature in acetonitrile solutions effectively depends on the anion present. A reaction mechanism which proceeds via a P-pentacoordinated intermediate was proposed for the epimerisation observed between the rac- and meso- forms in the presence of F⁻ donors in the solution. Reactivity of the new 1,2-dications towards a range of compounds (nucleophiles, bases) was examined and a series of new compounds including phosphine-phosphoniums and phosphonium-phosphine oxides were obtained. Cyclic and acyclic compounds belonging to a novel group of phosphine-arsine mixed peri-substituted acenaphthenes were synthesised by introducing arsenic and phosphorus to the acenaphthene ring, using stepwise lithiation and carbon-group 15 element coupling. All new compounds were fully characterised including single crystal X-ray diffraction. The effect of the peri-substitution by phosphorus moieties and mixed arsine-phosphine peri-substitution on the naphthalene ring was studied using the detailed structural data obtained for these systems.

Asymmetric hydroformylation : a powerful tool for the synthesis of pharmaceutical intermediates

Noonan, Gary M. — Wed, 22 Jun 2011 00:00:00 GMT

Abstract: The hydroformylation of unfunctionalised olefins (such as prop-1-ene and oct-1-ene) is an extremely valuable process and is practised on a massive scale industrially in the synthesis of commodity chemicals. In fact, it represents the worlds largest scale application of homogeneous catalysis. As a result, the majority of research carried out on this reaction has been in the study of catalytic systems which provide high rates and selectivity for the production of linear aldehydes from terminal unfunctionalised olefins, with the products finding use in the production of plasticizers and detergents. Asymmetric hydroformylation, the enantioselective variant of this reaction is extremely attractive, as low cost or easily accessible olefins are transformed into highly versatile value-added enantioenriched aldehydes in a single step. However synthetic organic chemists interested in the synthesis of fine chemicals, both in academia and industry, have been slow to adopt this attractive protocol for the production of chiral aldehydes. This is mainly due to the fact that in the past catalysts for this reaction exhibited low activity and/or selectivity in this process. However, the last two decades have seen major advances, mainly in the development of highly effective chiral ligands, and with these developments the time has come to tackle the vastly under-explored area of asymmetric hydroformylation of more functionalised olefins. To set the scene for the research carried out during this project a brief introduction will be given which highlights the historical development of highly efficient catalysts for the hydroformylation of olefins. This will be accompanied by some examples of the use of this methodology in the synthesis of pharmaceutically relevant compounds. It should become apparent from the introduction that the asymmetric hydroformylation of functionalised olefins and in particular nitrogen containing olefins, has received very little attention despite the fact that over half of all medicinal compounds contain at least one nitrogen containing functional group. Firstly we describe hydroformylation as a useful alternative to the classical synthesis of a delicate chiral building block, namely α-formyl amides. These compounds, traditionally only available through multi-step synthetic procedures from enantiopure starting materials, have been accessed by asymmetric hydroformylation of readily accessible and in some cases commercially available acrylamides. By judicious choice of reaction conditions and selection of the appropriately active chiral ligand enantioenriched α-formyl amides (e.e. up to 82%) were produced in high yield. A comparison is made between the classical route and the hydroformylation route to illustrate the potential of this efficient transformation. We have studied the hydroformylation of enamides, a much under-studied substrate class in hydroformylation and developed knowledge of how some more functionalised 1,1- and 1-2-subtituted olefinic amides react under hydroformylation conditions. This research illustrates the work still to be done in terms of development of more active and selective catalysts for this reaction but despite limitations we developed a potential route to gamma amino aldehyde derivatives which could be used in turn in the synthesis of physiologically important gamma amino butyric acid (GABA) derivatives. We provide an example of the highly efficient and selective asymmetric hydroformylation of a bicyclic olefinic lactam, which is of industrial importance in the synthesis of carbocyclic nucleosides. We demonstrate the efficiency of this synthetic methodology by synthesising the central pharmacophore of a potent anti- HSV-1 (herpes simplex virus) carbocyclic nucleoside via a hydroformylationreduction protocol. The classical synthesis of this pharmacophore involves nine synthetic transformations to produce racemic material, whereas the hydroformylationreduction protocol produces highly enantioenriched material in just two steps. We also demonstrate some downstream chemistry of the aldehyde products showcasing the synthetic versatility of the aldehyde functionality in the production of a variety of functionalised cyclopentanes. Finally the synthesis and catalytic testing of a group of novel phosphine-phosphite ligands for use in asymmetric hydroformylation is described, one of which produces unprecedented regioselectivity and state of the art enantioselectivity in the asymmetric hydroformylation of styrene. Highly selective asymmetric hydroformylation of the other two ‘model substrates’ in this reaction namely, vinyl acetate and allyl cyanide is also achieved. Having shown high activity and selectivity over these ‘model substrates’ this ligand takes its place among the small group of highly active and selective ligands available for asymmetric hydroformylation and may also help to broaden the substrate scope of this efficient and atom-economic transformation.

Design and synthesis of wide bite angle phosphacyclic ligands

Gillespie, Jason A. — Fri, 01 Jun 2012 00:00:00 GMT

Abstract: By examining structure activity relationships for a given catalytic reaction it is possible to discover what ligand features and parameters lead to stable and highly active/selective catalyst systems. With this knowledge in hand it may be possible to rationally design next generation ligands and catalysts to affect improved substrate transformations, with higher selectivities and faster reaction times. The success of Burk’s DuPhos ligands in asymmetric hydrogenation demonstrated that chiral phosphacycles can be a potent source of chiral induction, whilst in a similar vein the work of van Leeuwen and Kamer established the wide bite angle xanthene based ligands as excellent catalysts in a range of reactions including hydroformylation. In a preliminary study with Osborne they showed that combining these wide bite angle ligand backbones with Burk’s phospholane moieties led to a new powerful ligand in asymmetric allylic substitution. To examine the potential of combining these two ligand features further we designed and synthesised nine new C2-symmetric bidentate wide bite angle bisphosphacyclic ligands, featuring phosphetane, phospholane or diazaphospholane rings, aiming at a wide diversity of steric and electronic properties. The application of these ligands as chiral auxiliaries in transition metal catalysed reactions, including; hydrogenation, hydrocyanation, hydroformylation and allylic alkylation has been investigated. Good to excellent enantioselectivities were observed in all reactions, with maximum ee’s of 92.5% observed in hydrogenation, using N-(3,4-dihydro-1-napthalenyl)-acetamide as substrate, and of 96.2% in the alkylation of 1,3-diphenyl-2-propenyl acetate.

Generation of micro/nano metallic nanostructures using self-assembled monolayers as template and electrochemistry

She, Zhe — Wed, 20 Jun 2012 00:00:00 GMT

Abstract: This thesis studies a scheme to fabricate small-scaled metal structures by electrochemical metal deposition and lift off. The key point is the use of self-assembled monolayers (SAMs) to control both interfacial charge transfer in electrodeposition and adhesion of the deposit to the substrate. Patterned SAMs exhibiting blocking and non-blocking areas are applied as templates in electrochemical deposition of Cu or Au. Thiol SAMs on Au substrates are used, namely alkane thiols and thiols combining an aliphatic chain with a biphenyl or biphenyl analogous pyridine-phenyl moieties. The patterning of SAMs is realised with microcontact printing (μCP) and electron beam lithography. Electrochemical deposition based on defects in the SAMs is optimised towards generating small nanostructures and depending on the system single or stepped potential procedures are applied. Generated metal structures are transferred to an insulator by lift off. Au microstructures (~10 μm) have been made with microcontact printing and transferred onto epoxy glue, which can potentially be used as microelectrodes in electroanalytical chemistry. Sub-100 nm Cu features and sub-40 nm Au features have been created with electron beam lithography respectively. Lift off process has successfully transferred Cu nanostructures onto epoxy glue with high precision. In contrast to the deposition mediated by defects, Cu deposition mediated by discharging Pd²⁺ coordinated to a pyridine terminated SAM directly through the SAM molecules has been explored as a new approach. This new approach has potential to decrease the size of the metal structure further and the preliminary results show possibility of sub-10 nm features. SAMs prepared with a newly synthesised molecule, 3-(4'-(methylthio)-[1,1'-biphenyl]-4-yl)propane-1-thiol, are characterised by STM, XPS and NEXAFS. The metal structures are investigated by SEM, AFM and STM.

The effects of carbon deposition on catalyst deactivation in high temperature Fischer-Tropsch catalysts

Patterson, Veronica A. — Fri, 01 Jun 2012 00:00:00 GMT

Abstract: In this work, carbonaceous deposits on spent HTFT catalysts were investigated. This research was required in order to better understand the observed loss in productivity observed in the industrial reactors, with the aim of improving the economy of the HTFT process. A host of complementary techniques were employed to systematically determine the composition of a typical catalyst recovered from a reactor. Spent HTFT catalysts are comprised of magnetite and a mixture of iron carbides as well as adsorbed hydrocarbon products (soft carbon) and hard carbon. Reaction initiates at the particle surface and along the promoter-rich grain boundaries toward the core of the grains. A partially reacted particle would therefore have a core-shell structure, with magnetite representing the unreacted region of the catalyst. The reacted region consists of a porous carbonaceous matrix with soft carbon and carbide crystallites nestled in this matrix. The hard carbonaceous species is a mixture of polymeric carbon and polycyclic aromatic hydrocarbons. The particle structure is linked to the sample preparation method and an alternative method yielding catalyst particle with uniformly distributed promoter elements could be beneficial. Investigating carbonaceous species is a complex process, and development of a fresh methodology would aid in the quest for insight into the nature of carbonaceous species in various systems. A new approach which entails a combination of the traditional techniques combined with MALDI-TOF MS enabled a deeper investigation. Additional aspects such as the molecular weight distributions along with known information about crystallinity and morphology of the catalyst provide a comprehensive study of carbonaceous material. Polymeric carbon and very large polycyclic aromatic hydrocarbons constitute hard carbon and can be observed with minimal sample preparation procedures. The evolution of the HTFT catalysts was investigated as a function of time-on-stream. This enabled us to study the effects of increasing amounts of hard carbon on the activity and the chemical and physical properties of the catalysts. The catalyst activity was found to decrease with increasing hard carbon content, although the effect of carbon deposition cannot be distinguished from phase transformation (oxidation) which occurs simultaneously. A method to quantify the amount of hard carbon, which progressively builds up on the catalyst, was demonstrated. This required a great deal of method development, which provides a platform for future investigations of these catalysts. Importantly, it allows predictions of the amounts of carbon that will be deposited after a certain reaction time. This allows more efficient regulation of catalyst replacement. The production of fine carbon-rich particles in the industrial reactor poses a major problem in the process. Carbon deposition leads to an increase in particle diameter with time on-stream. Permissible levels of hard carbon were identified, beyond which the mechanical strength of the catalyst particles deteriorate. This leads to break-up of the particles and therefore fines formation. The surface area and pore volume generally increase with progressive deposition of hard carbon, while the bulk density of the catalyst material exhibits a linear decrease with carbon build-up. A mechanism is proposed for hard carbon formation which apparently occurs through the dissociative adsorption of CO to form a carbon monolayer. This is followed by polymerisation of the carbon atoms. Meta-stable interstitial carbides are formed at the iron-carbon interface. Owing to a carbon concentration gradient between the top of the surface and the bottom of the metal or carbide particle, carbon diffusion across the crystal (carbide decomposition) and grows as a PAH molecule lifting the iron carbide away from the particle. As this corrosion process is intrinsic to iron-based catalysts, a catalyst that contains sulphur is proposed for future development.

NHCs in organocatalysis : azolium enolate generation and synthetic applications

Douglas, James. J — Fri, 30 Nov 2012 00:00:00 GMT

Abstract: This thesis details investigations into organocatalytic reactions promoted by N Heterocyclic Carbenes (NHCs) that proceed via an assumed azolium enolate intermediate. Initial research focused on the catalytic asymmetric synthesis of β-lactones via an NHC-catalysed formal [2+2] cycloaddition of alkylarylketenes and chloral. This process operated in good yield (typically >70%) and moderate diastereoselectivity (typically ~75:25 dr, anti:syn) for a range of alkylarylketenes. The enantioselectivity was consistently high for the major anti diastereomer (typically >80% ee) and minor syn diastereomer (typically >70% ee). Interestingly, when a ketene bearing a 2 substituent on the aryl ring, or one that included an α-branched alkyl group was used, an exclusive asymmetric chlorination pathway was accessed. This is, to the best of our knowledge, the first use of chloral as an electrophilic chlorination agent. This methodology was found to be applicable to a range of 2-arylsubstituted alkylarylketenes in good yield and enantioselectivity (typically >70% yield and up to 92% ee). The scope of this reaction with respect to the aldehyde moiety was then analysed with 2-nitrobenzaldehyde providing β-lactone products in excellent dr (up to 94:6 syn:anti) and with good yield and enantioselectivity (typically >60% yield and >80% ee). Importantly these β-lactone products were amenable to further derivatisation with transformation to β-amino- and β-hydroxy acids. Following the identification of an NHC-catalysed chlorination reaction using chloral, the development of a general procedure was undertaken. Following a wide screen of electrophilic chlorination sources, 2,3,4,5,6,6 hexachlorocyclohexa 2,4 dienone was identified as optimal, operating in excellent yield (up to 97%) but in moderate to poor levels of enantioselectivity (21−61% ee). Efforts to expand the practicality of azolium enolate processes focused on the use of α-aroyloxyaldehydes as bench stable mono-substituted ketene surrogates. A range of differentially substituted α-aroyloxyaldehydes allowed access to δ-lactones via the NHC-catalysed [4+2] cycloaddition between azolium enolates and β,γ unsaturated α ketoesters. Following initial optimisation the reaction proceeded in exquisite diastereo- and enantiocontrol (typically >95:5 dr and >99% ee).

Emergence in complex systems based on synthetic replicators

Huck, Juergen — Tue, 01 Nov 2011 00:00:00 GMT

Abstract: Biopolymers with defined recognition pattern were used to generate the first artificial replicating systems. Stripping down these systems to their most fundamental properties allowed to move away from the biological origins to construct replicators consisting of simple organic molecules. These systems have proven highly instructive for the in-depth understanding of the main requirements for the targeted development of efficient replicators. With this knowledge at hand, it is now possible to combine several replicators for the formation of molecular networks, and to use the unique properties of replication to manipulate these networks by external stimuli. In the thesis presented, the investigation of a family of self-replicators culminated in the successful construction of several examples of a multicyclic system in which four building blocks are able to react via two autocatalytic and two reciprocal pathways. Owing to the connectivity in this reaction system, it was demonstrated that its outcome can be influenced in a programmable manner by the addition of informational template. Some of the responses can be deduced directly from the functioning of the individual systems, others however are to be classified as emergent properties of the network. Upon elucidation of the multicyclic systems, it became apparent that working in closed reaction systems puts intrinsic boundaries on the possibility to bias the outcome of the reaction network. This limitation prevented the extinction of the inferior type of replicators even under highly unfavourable conditions and instead always led to coexistence for all species.

Studies on palm oil with special reference to interestterification

Kifli, Hamirin Abdul — Thu, 01 Jan 1981 00:00:00 GMT

Abstract: Interesterification which can be considered as the removal of fatty acids at random from glyceride molecules, the shuffling of these acids and their replacement of the glyceride molecules, has been investigated for palm oil, palm oil fractions and palm oil mixed with other vegetable oils. The reaction has been effected at 90 C in the presence o£ sodium methoxide as a catalyst. Pancreatic lipolysis has been ernployed to check the completeness of the reaction. On complete randomisation, the fatty acid composition of the 2-position is the same as that of the whole fat either before or after interestelification. The changes in the glyceride composition resulting from interesterification have been exarnined by various standard techniques. Silver ion thin layer chromatography which separates glycerides according to their degree of unsaturation has been used extensively. Using luethyl heptadecanoate as an internal standard various component glycerides have been quantified. GLG of glycerides has also been used to study the changes in glyceride composition of fats containing a wide range of fatty acid composition. The application of thin layer chromatography, using methyl heptadecanoate as an interncll standard, has also been extended to deterrnine the esters formed during interesterification when sodium methoxide is used as a catalyst. The changes in physical properties which result from interesterification have been determined by NMR (solids fat content) and DSC (thermal behaviour). Attempts to prepare a mixture of fats and oils containing palm oil and / or palm oil fractions which simulates vanaspati have been made. Many mixtures have been subjected to interesterification and the physical properties of the products have been investigated using NMR for all the mixtures and DSC of selected mixtures. The SFC curve of each mixture has been compared with that of vana spati. useful mixtures are recognised. Some potentially Stereospecific glyceride analysis of various types of palm oils has also been carried out using Brockerhoff's method. This involves partial deacylation of the triacylglycerols, isolation of the a,B-diacylglycerols, conversion of these diacylglycerols to phospholipid derivatives and finally stereospecific hydrolysis by Phospholipase A 2 from snake venom, The possible component glycerides have then been computed as suming a i-random, z- random, 3-random distribution of the fatty acids found in each of these positions. The results have been discussed in tenus of double bond number and of carbon number: The latter has been compared with results obtained by gas chromatography of the whole oil.

An investigation into the photocatalytic activity of titanium dioxide

Calder, Raymond Michael — Mon, 01 Jan 1990 00:00:00 GMT

1,2-bis-(ditertbutylphosphinomethyl)benzene in catalysis

Jiménez, Cristina — Thu, 01 Jan 2004 00:00:00 GMT

Abstract: Different diphosphine ligands having the structure shown below have been studied for carbonylation and hydroformylation reactions. Depending on the substituent on the phosphorus atoms the electronic and steric properties can be tuned to direct the reaction towards the desired products. Palladium methoxycarbonylation of a large variety of unsaturated compounds has been attempted under very different conditions. The outcome of these reactions was the achievement of the linear products with a selectivity higher than 99.5 % under mild conditions of pressure and temperature. Chloroaromatic compounds have also been employed as substrates in methoxycarbonylation reactions. Unexpected results were observed since carbonylation was possible only when a strong electron withdrawing group was present. The origin of the many side products from these reactions has been elucidated. Rhodium hydroformylation was not as successful as palladium Methoxycarbonylation since relatively severe conditions had to be used to get good rates and good selectivity. In no case were there as good as those obtained in the carbonylation reactions. However, unusual factors, such as the presence of chlorine in the reaction media, have been found to influence either the conversion or the selectivity.

The vicinal difluoro motif in organic chemistry : the synthesis and behaviour of compounds derived from 2,3-diflurosuccinic acids

Schueler, Martin — Sun, 01 Jan 2006 00:00:00 GMT

Abstract: The following work describes the synthesis of compounds carrying a vicinal difluoro motif and the evaluation of this structural element to influence the conformation of organic molecules. The synthesis of erythro and threo 1,2-difluoro-1,2-diphenylethane was achieved by bromofluorination and subsequent halogen exchange from stilbene. Oxidative degradation of the phenyl rings allowed to access erythro and threo 2,3- difluorosuccinic acids and a variety of derivatives thereof. The conformations of these compounds were investigated by means of X-ray analysis and NMR spectroscopy. Conformational analysis of derivatives of 2,3-difluorosuccinic acid was carried out using JHFandJHHNMR coupling constants. A clear preference for the conformations in which the two vicinal C-F bonds are gauche emerged from these calculations, which was confirmed by temperature and solvent dependent NMR analyses. The vicinal difluoro motif was incorporated into small peptide structures. In the solid state, a strong preference to align the vicinal C-F bonds gauche to each other was observed and when adjacent to an amide moiety, the C-F bond was found to prefer an anti periplanar orientation with respect to the carbonyl bond. These effects appeared to override steric and electrostatic interactions. The conformation of these fluorinecontaining peptides showed a clear dependence on the stereochemicaol rientation of the C-F bonds, and this appears to be an effective tool for influencing the secondary and consequently tertiary structure in a predictable manner. In order to access single enantiomerso f peptides having the vicinal difluoro, motif, a stereoselectiver oute to R,R and SS 2,3-difluorosuccinic was developed. This involved nucleophilic fluorination of the cyclic sulfates generated from (R, R)- and (SS)- diethyl tartrates and subsequent deoxofluorination of the intermediate fluorohydrins.

The C-F bond as a conformational probe in agonist receptor interactions.

Chia, Poh Wai — Wed, 20 Jun 2012 00:00:00 GMT

Abstract: Chapter 1 gives an introduction on the physical and electronic properties of fluorine and the C-F bond. The application of fluorine in organic chemistry, which is mainly attributed to the electronic properties of fluorine is described. The role of fluorine in neuropsychiatric drug development and for influencing the conformational study of bioactive amines is also illustrated. Chapter 2 of the thesis describes the synthesis of the two fluorinated stereoisomers (2R, 3S) and (2S, 3S) 3-fluoro N-methyl–D-aspartate (NMDA). These were prepared as analogues to study the binding conformation of NMDA on the glutameric NMDA receptor. The (2S, 3S)-3-fluoro NMDA D-72 was successfully prepared from diethyl D-tartrate. The (2S,3R)- stereoisomer was prepared by separation of diastereoisomers generated by reaction of a meso- epoxide with an enantiomerically pure amine, followed by fluorination. Both the (2S,3R)- and (2R,3S)- enantiomers were prepared separately, however assignment of the absolute configuration to each enantiomer could not be unambiguously proven. The fluorinated 3F-NMDA stereoisomers were assessed by dose response analysis and TEVC analysis in the rat glutamate receptor. The biological results show that the (2S, 3S)-3F NMDA D-72 is a good agonist, whereas (2R, 3S)- and (2S, 3R)-3-fluoro NMDA are inactive stereoisomers. The result of this study indicates that (2S, 3S)-3F NMDA D-72 is the only relevant agonist that can access a conformation for binding to NMDA receptor. Chapter 3 describes the preparation of fluorinated analogues of the calcium receptor agonist Cinacalcet. The (2R,1’R)-123 and (2S,1’R)-124 fluoro Cinacalcet diastereoisomers were prepared from 3’-(trifluoromethyl)cinnamic acid and 3’’-SF₅-137 Cinacalcet was synthesized from pentafluorosulfanyl benzyl alcohol. The biological assessment in the calcium receptor (CaR) revealed that both (2R,1’R)-123 and (2S,1’R)-124 fluoro Cinacalcet is slightly lower in potency compared to the non-fluorinated Cinacalcet 117. This suggests that the Cinacalcet 117 adopts an extended conformation when bound to the receptor. The 3’’-SF₅-137 Cinacalcet possesses equipotent activity with Cinacalcet 117.

Structural analysis of the potential therapeutic targets from specific genes in Methicillin-resistant Staphylococcus aureus (MRSA)

Yan, Xuan — Tue, 01 Nov 2011 00:00:00 GMT

Abstract: The thesis describes over-expression, purification and crystallization of three proteins from Staphylococcus aureus (S. aureus). S. aureus is an important human pathogen and methicillin-resistant S. aureus (MRSA) is a serious problem in hospitals nowadays. The crystal structure of 3-Methyladenine DNA glycosylase I (TAG) was determined by single-wavelength anomalous diffraction (SAD) method. TAG is responsible for DNA repair and is an essential gene for both MRSA and methicilin-susceptible S. aureus (MSSA). The structure was also determined in complex with 3-methyladenine (3-MeA) and was solved using molecular replacement (MR) method. An assay was carried out and the molecular basis of discrimination between 3-MeA and adenosine was determined. The native crystal structure of fructose 1-phosphate kinase (PFK) from S. aureus was determined to 2.30 Å and solved using molecular replacement method. PFK is an essential enzyme involved in the central metabolism of MRSA. Despite extensive efforts no co-complex was determined, although crystals were obtained they diffracted poorly. An assay which can be used to test for inhibitors has been developed. Mevalonate Kinase (MK) is another essential enzyme in MRSA and is a key drug target in the mevalonate pathway. Native data diffracting to 2.2 Å was collected. The structure was solved using multiple isomorphorus replacement (MIR) method. A citrate molecule was bound at the MK active site, arising from the crystallization condition. The citrate molecule indicates how substrate might bind. The protein was kinetically characterized. A thermodynamic analysis using fluorescence-based method was carried out on each protein to investigate binding interactions of potential fragments and thus a drug design starting point.

Titanium dioxide nanomaterials as negative electrodes for rechargeable lithium-ion batteries

Gentili, Valentina — Wed, 30 Nov 2011 00:00:00 GMT

Abstract: Titanium dioxide, TiO₂, materials have received much attention in recent years due to their potential use as intercalation negative electrodes for rechargeable lithium-ion batteries. The aim of this doctoral work was to synthesise and characterise new titanium dioxide nanomaterials and to investigate their electrochemical behaviour. Three morphologies of TiO₂(B) phase: micro-sized (bulk), nanowires and nanotubes, were synthesised. All three exhibit properties which make them excellent hosts for lithium intercalation. The nanotubes show the best capability of accommodating lithium in the structure, being able to host over one molar equivalent of lithium at low current rates (5 mA g⁻¹). The lithium insertion mechanism in the TiO₂(B) was studied using powder neutron diffraction. In addition, the nature of the irreversible capacity of the nanotubes was studied and ways of reducing it proposed. Nanotubes of another titanium dioxide polymorph, anatase, were synthesised and characterised. Their electrochemical performance was compared with that of commercially available counterparts with different morphologies and particle sizes. The interrelation between particle size/morphology and electrochemical properties has been established. The insertion of lithium which leads to phase variations was studied using in situ Raman microscopy and neutron powder diffraction. It has been demonstrated that doping of the TiO₂(B) nanotubes with vanadium improves their electronic conductivity which is essential for practical applications. Remarkably good electrochemical performance is exhibited by the 6% V-doped TiO₂(B) nanotubes.

Enantioselective homogeneous catalysts for the synthesis of fluorinated organic compounds

Jones, Charlotte E.S — Wed, 01 Jun 2011 00:00:00 GMT

Abstract: This thesis is divided into three main results chapters that reflect the path my research took. In the first results chapter, the first organocatalyst for the carbonyl-ene reaction was discovered and found to give high conversion using 1,3-bis(3,5-bis(trifluoromethyl)phenyl)thiourea. Various carbonyl and alkene precursors were examined in the ene reaction in both catalysed and uncatalysed reactions. It was found that ene reactions using fluoral and ethyl trifluoropyruvate give higher rates of reaction when compared to other carbonyl compounds. A novel enantiopure thiourea was synthesised and the ene reaction was catalysed enantioselectively to 33% e.e. In an attempt to catalyse the reaction to a further extent a new thiourea bonded to a P(=S)R2 group was developed. However, the intramolecular hydrogen bonding of this catalyst was thought to be so strong that this it did not catalyse the reaction. The synthesis of a chiral phosphoric acid was achieved but this was an unsuccessful catalyst in the ene reaction. Two component achiral thiourea and chiral acids were also examined in the ene and Mannich-type reaction. The new easily synthesised thiourea for this reaction has an interesting intermolecular hydrogen bonding coordination in the solid state. Asymmetric fluorination of ketoesters using palladium is a dynamic kinetic resolution. In the 2nd chapter cationic palladium complexes were synthesised and used to determine the optimum parameters for bidentate ligands in this reaction. Four carbon chain phosphines were found to give the highest conversion for this reaction among those ligands tested such as 1,4-bisdiphenylphosphinobutane (bite angle 99º). A new bis-phosphinous amide chiral ligand was developed with a bite angle of 96.7º. The dichloropalladium complex of this phosphine was isolated and structurally characterised. The use of the palladium complex in asymmetric fluorination was attempted however this was found to be unsuccessful. Mechanistic studies reveal that the formation of the desired cationic catalyst did not occur under conditions shown to work well for other palladium phosphine complexes. The ligand was investigated further in hydrogenation reactions. The phosphinous amide was protected as its borane and was used in the rhodium catalysed hydrogenation of alkenes to give high conversion and up to 93% e.e. The borane protected phosphinous amide was also found to catalyse the hydrogenation of acetophenone using copper complexes with up to 84% e.e for the hydrogenation of acetophenone, although conversion was quite low.

Lewis base-promoted organocatalysis : O- to C-carboxyl transfer reactions

Campbell, Craig D. — Tue, 30 Nov 2010 00:00:00 GMT

Abstract: This work describes the application of a variety of Lewis bases, encompassing predominantly N-heterocyclic carbenes (NHCs), but also the use of imidazoles, aminopyridines, amidines and isothioureas, as effective catalysts in the dearomatisation of heterocyclic carbonates, predominantly the rearrangement of oxazolyl carbonates to their C-carboxyazlactone isomers by means of the Steglich rearrangement. This rearrangement reaction has been investigated extensively, with the development of simplified reaction procedures and the invention of domino cascade protocols incorporating this transformation. In an attempt to understand the mechanism of this O- to C-carboxylation process, a number of interesting observations have been made. Firstly, the class of NHC has an important factor in promoting the rearrangement, with triazolinylidenes being the most effective. Secondly, an interesting chemoselectivity has been delineated using triazolium-derived NHCs, prepared using weak bases (typically Et₃N) or strong metallated bases; both alkyl and aryl oxazolyl carbonates undergo smooth rearrangement with triazolinylidenes derived from strong metallated bases such as KHMDS, while only aryl oxazolyl carbonates undergo rearrangement using Et₃N. Extensive effort has focused towards the development of asymmetric variants of these protocols, primarily towards the design, synthesis and evaluation of chiral NHC precatalysts. To this end, a number of chiral azolium salts have been prepared, encompassing a number of different NHC classes, including C₁- and C₂-imidazolinium salts, C₂-imidazolium salts and a range of triazolium salts. Efforts towards the asymmetric catalysis of the Steglich rearrangement of oxazolyl carbonate substrates have given an optimal 66% ee. Similar rearrangements have been demonstrated with the related furanyl heterocyclic substrate class, producing a mixture of α- and γ-carboxybutenolides. In contrast to the analogous oxazolyl carbonates, the regioselectivity of this rearrangement is dependent upon the nature of the Lewis base employed. Amidines and aminopyridines give a mixture of the α- and γ- regioisomers with generally the α-regioisomer being preferred, while a triazolium-derived NHC gives rise to predominantly the thermodynamically more stable γ-carboxybutenolide. Using amidines or aminopyridines, this rearrangement has been shown to proceed via an irreversible C-C bond-forming process, but in contrast, the rearrangement using the NHC proceeds via an equilibrium process with an optimised regioselectivity of >98:2 for the γ-carboxybutenolide regioisomer over the α-regioisomer. Whilst the asymmetric variant using chiral NHCs has proven unfruitful, rearrangements using a chiral isothiourea have given high levels of regioselectivity towards the α- regioisomer and with excellent levels of enantiodiscrimination (77–95% ee).

SA-CASSCF and R-matrix calculations of low-energy electron collisions with DNA bases and phosphoric acid

Bryjko, Lilianna — Wed, 22 Jun 2011 00:00:00 GMT

Abstract: The research presented in this thesis was carried out as part of a collaboration between the groups of Dr Tanja van Mourik at the School of Chemistry, University of St Andrews and Professor Jonathan Tennyson at the Department of Physics and Astronomy at University College London. This thesis presents State-Averaged Complete Active Space Self Consistent Field (SA-CASSCF) calculations on nucleic acid bases, deoxyribose and phosphoric acid H₃PO₄). In the case of uracil, for comparison, Multireference Configuration Interaction calculations were also performed. The SA-CASSCF orbitals were subsequently used in R-matrix electron scattering calculations using the close-coupling model. Of major importance for obtaining accurate SA-CASSCF results is the choice of the active space and the number of calculated states. Properties such as the electronic energy, number of configurations, excitation energy and dipole moment were considered in the choice of active space. Electron-collision calculations were performed on two of the most stable isomers of phosphoric acid, a weakly dipolar form with all OH groups pointing up and a strongly dipolar form where one OH group points down. A broad shape resonance at about 7 eV was found for both isomers. Ten-state close-coupling calculations suggest the presence of narrow, Feshbach resonances in a similar energy region. Elastic and electronically inelastic cross sections were calculated for both isomers. The R-matrix calculations on uracil were done by the group from UCL. R-matrix calculations are currently being done on guanine. Scattering calculations on the other DNA bases will be performed in the near future.

Extending ionothermal synthesis

Aidoudi, Farida Himeur — Sun, 01 Jan 2012 00:00:00 GMT

Abstract: An exploration of some organic-inorganic hybrid metal fluorides and lanthanide containing metal organic frameworks (Ln-MOFs) has been carried out under ionothermal conditions. In this synthesis technique an ionic liquid (IL) or deep eutectic mixture (DES) is used as the solvent and in many cases as the provider of the organic structure directing agent. A wide range of ILs and DESs have been investigated as the reaction solvent for the synthesis of organically templated vanadium fluorides and oxyfluorides (VOFs), and initially this has proved to be successful with the isolation of 13 phases, including eight new materials. In the VOFs synthesis the IL acts as a solvent, however the DES acts as a solvent and also as a template delivery agent, where the expected template is provided by the partial breakdown of the urea derivative component. Interestingly, it has been shown that the same structure can be accessible via two different ways; either by using IL with an added templating source, or simply through the use of a DES without any other additive; since the template is provided by the in situ breakdown of the DES. The synthesis of VOFs with extended structures was achieved by the use of the hydrophobic IL 1-ethyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide (EMIM Tf₂N) as the solvent. [HNC₅H₅][V₂O₂F₅] represents the first VOF with a 2D network that contains exclusively V⁴⁺. This material may be considered as arising via condensation of the previously known ladder-like chains. Furthermore, using imidazole as an added template has produced another layer material that has significant similarities to the [HNC₅H₅][V₂O₂F₅] structure, but with some key differences. Within the same system three other phases were also isolated, including two novel materials displaying the known ladder-type building units. Further investigations in the ionothermal synthesis of VOF using EMIM Tf₂N resulted in a successful synthesis of [NH₄]₂[HNC₇H₁₃][V₇O₆F₁₈], a novel material displaying a unique double layered topology featuring a S = ½ kagome type lattice of V⁴⁺ ions (d¹). Two of the V⁴⁺ based kagome sheets are pillared by V³⁺ ions to form a double layered structure templated by both ammonium and quinuclidinium cations. This compound exhibits a high degree of magnetic frustration, with significant antiferromagnetic interactions but no long range ordering was observed above 2 K. This material presents an interesting comparison to the famous Herbertsmithite, ZnCu₃(OH)₆Cl₂, and may provide an excellent candidate for realising a quantum spin liquid (QSL) ground state. Interestingly, in this system the use of EMIM Tf₂2N as a solvent produces mainly V⁴⁺-containing materials, despite the high reaction temperature (170 °C). This characteristic is unprecedented in VOFs synthesis, as rising the reaction temperature above 150 °C in other techniques (i.e. hydrothermal synthesis) would often result in further reduction of V⁴⁺ to V³⁺. Using the ionothermal technique in the synthesis of hybrid iron fluorides resulted in the isolation of three chain-type materials. Again, the IL acts as the solvent and the DES acts as the solvent and also as the template provider where the expected template is released by the partial breakdown of the urea derivative component of the DES. The synthesis of Ln-MOF using a choline chloride/ 1,3-dimethylurea deep eutectic mixture has produced three novel isostructural materials. Usually, in ionothermally prepared materials (i.e. zeolites) the urea portion of the DES is unstable and breaks down in situ to form ammonium or alkylammonium cations. In the ionothermal synthesis of Ln-MOF, 1,3-dimethyurea (DMU) remains intact and is occluded in the final structure. Using a choline chloride/ethylene glycol deep eutectic solvent led to the isolation of a Ln-MOF with interesting structural properties, however none of the DES components appeared in the final structure. These results demonstrate once more the usefulness and applicability of the ionothermal synthesis method and emphasise how this synthesis technique can be further extended and applied in the preparation of important structures with unique properties and functionalities.

Assessment of density functional methods for computing structures and energies of organic and bioorganic molecules

Cao, Jie — Wed, 30 Nov 2011 00:00:00 GMT

Abstract: The work in this thesis mainly focuses on the assessment of density functional methods for computing structures and energies of organic and bioorganic molecules. Previous studies found dramatic conformational and stability changes from B3LYP to MP2 geometry optimization for some Tyr-Gly conformers. Possible reasons could be large intramolecular basis set superposition errors (BSSEs) in the MP2 calculations and the lack of dispersion in the B3LYP calculations. The fragmentation method and three kinds of rotation methods were used to investigate intramolecular BSSE. It is concluded that the rotation method cannot be used to correct intramolecular BSSE along a rotation profile. Another methodology is to employ modern density functionals. We focused on M06-L with the Tyr-Gly conformer ‘book6’. Potential energy profiles were determined by computing the energy for geometries optimized at various fixed values of a distance that controls the degree of foldedness of the structure. M06-L manifested itself as a very promising method to investigate the potential energy surface of small peptides containing aromatic residues. To predict Tyr-Gly structures, 108 potential conformers were created with a Fortran program. The geometry optimizations were done using M06-L/6-31G(d) and M05-2X/6-31+G(d). Two schemes were employed and the most stable conformers were compared to the 20 stable conformers found by B3LYP. Both schemes found 10 conformers similar to one of the B3LYP stable conformers, as well as several newly found conformers. The study of a missing B3LYP stable conformer showed that the possible reason of missing conformers may be the lack in dispersion in B3LYP theory. To study the hydration effect, we studied the conformations of neutral and zwitterionic 3-fluoro-γ-aminobutyric acid (3F-GABA) in solution using different solvation models, mainly the explicit water molecule models. Zwitterionic forms of 3F-GABA are preferred in solution. M06-2X performs better in calculating transition energy profiles than MP2.

Nanomaterials for solid oxide fuel cell electrolytes and reforming catalysts

Kosinski, Marcin Robert — Mon, 28 Nov 2011 00:00:00 GMT

Abstract: In this work, a broad range of analytical methods was applied to the study of the following three materials systems: yttria-stabilised zirconia (YSZ), samarium-doped ceria (SDC) and SDC-supported metal catalysts. YSZ and SDC were studied in the light of their application as solid electrolytes in Solid Oxide Fuel Cells. The SDC-supported metal catalysts were evaluated for application in the reforming of methanol. The conductive properties of YSZ pellets derived from powders of different Y contents and particle size ranges were investigated using Impedance Spectroscopy (IS). Comparative studies of the crystallography (by X-ray Powder Diffraction (XRD)), morphology (by Scanning and Transmission Electron Microscopy (SEM, TEM)), chemical composition (by Energy Dispersive X-ray Spectroscopy (EDX) and Inductively Coupled Plasma Mass Spectroscopy (ICP-MS)) and sintering behaviour (dilatometry) were employed in the overall assessment of the conductivity results collected. Detailed studies of three SDC compositions were performed on nanopowders prepared by a low temperature method developed in the Baker group. Modifications led to a simple and reliable method for producing high quality materials with crystallites of ~10 nm diameter. The products were confirmed by XRD and TEM to be single-phase materials. Thermogravimetric analysis, dilatometry, specific surface area determination, elemental analysis and IS were carried out on these SDC powders. The relationships between particle size, chemical composition, sintering conditions and conductivity were studied in detail allowing optimum sintering conditions to be identified and ionic migration and defect association enthalpies to be calculated. Finally, the interesting results obtained for the SDC nanopowders were a driving force for the preparation of SDC-supported metal catalysts. These were prepared by three different methods and characterised in terms of crystallographic phase, specific surface area and bulk and surface chemical composition. Isothermal catalytic tests showed that all catalysts had some activity for the reforming of methanol and that some compositions showed both very high conversions and high selectivities to hydrogen. These catalysts are of interest for further study and possibly for commercial application.

Catalytic synthesis of organophosphate plastics additives from white phosphorus

Armstrong, Kenneth Mark — Tue, 22 Nov 2011 00:00:00 GMT

Abstract: Triaryl phosphates were synthesized from white phosphorus and phenols in aerobic conditions and in the presence of iron catalysts and iodine. Full conversion to phosphates was achieved without the use of chlorine or chlorinated solvents, and the reactions do not produce acid waste. Triphenyl phosphate, tritolyl phosphate and tris(2,4-di-tert-butyl)phenyl phosphate were synthesized by this method with 100% conversion from P₄. Various iron(III) diketonates were used to catalyse the conversion. Mechanistic studies showed the reaction to proceed via the formation of phosphorus triiodide (PI₃), then diphenyl phosphoroiodidate (O=PI(OPh)₂) before the final formation of triphenyl phosphate (O=P(OPh)₃). The nucleophilic substitution of O=PI(OPh)₂ with phenol to form O=P(OPh)₃ was found to be the rate determining step. It was found that by modifying the reaction conditions the same catalytic systems could be used to synthesize triphenyl phosphite directly from P₄. Triphenyl phosphite was synthesized in selectivities of up to 60 %. The mechanism of these transformations was also elucidated. Independent syntheses of the intermediate in the reaction mechanism, O=P(OPh)₂I and its hydrolysis products diphenyl phosphate (O=P(OPh)₂OH) and tetraphenyl pyrophosphate ((O)P(OPh)₂-O-P(O)(OPh)₂) were developed from PI₃. The 2,4-di-tert-butyl phenol analogues of these compounds were also prepared. Bis-(2,4-di-tert-butylphenyl) phosphoroiodidate was then reacted with various alcohols to produce a series of mixed triorgano phosphates.

Towards new catalytic systems for the formation of methyl methacrylate from methyl propanoate

Coetzee, Jacorien — Wed, 30 Nov 2011 00:00:00 GMT

Abstract: The two stage Lucite Alpha Process for the industrial manufacturing of methyl methacrylate (MMA) represents one of the most efficient technologies currently available for the large scale production of this important chemical commodity. The second stage of this process, which involves the condensation of methyl propanoate (MeP) with formaldehyde over a heterogeneous fixed bed catalyst, however, still shows great scope for improvement. Herein the development of a novel homogeneous catalytic system that would promote the condensation of either propanoic acid or MeP with formaldehyde is explored. Since C–C bond forming reactions which proceed via C–H activation pathways typically display high atom efficiency, our efforts were particularly focussed on employing a functionalisation strategy that is mediated by C–H activation. In the case of propanoic acid, the possibility of achieving regioselective α-methylenation by linking the substrate to phosphorus was evaluated. Thus, a series of acyloxyphosphines and acylphosphites derived from either propionic acid or phenylacetic acid was prepared and, where stability allowed, fully characterised. Some of the resultant simple mixed anhydrides posed problems relating to their stability, and the stabilisation of such ligand systems by using electronic and / or steric effects was therefore explored. In addition, the coordination chemistry and in solution behaviour of Rh(I) and Ru(II) complexes containing these ligands was examined. Similar to the free ligands, complexes derived from these mixed anhydrides rearranged in solution via a number of decomposition pathways, with the specific pathway dependent on the nature of the auxiliary ligands. For most of these complexes, however, ligand decarbonylation was the route of preference for decomposition. Despite the instability of these complexes, a selection of Rh(I) mixed anhydride complexes were assessed for their potential as C-H activation catalysts in reactions aimed at the α-methylenation of saturated carboxylic acids. Furthermore, the stabilisation of Rh(I) mixed anhydride complexes with chelating auxilary ligands, such as bisphosphines or N-substituted diphosphinoamines, was explored. In particular, a series of new Rh(I) mixed anhydride complexes containing dppe, dppb and dppbz as secondary ligands were prepared and the effects of these secondary ligands on the in solution stability of these complexes assessed. As MeP represents the final product in the first stage of the Alpha process and not propanoic acid, the utilisation of PNP iridium pincer complexes in the regioselective sp³ C–H activation of MeP and related esters was also examined. The factors that govern the regioselectivity of such reactions were of great interest to us and, in particular, the effects of water on the reactivity and regioselectivity of these reactions were explored. For MeP, preferential C–H activation of the methoxy group was found to proceed under anhydrous conditions and the catalytic functionalisation of this site with ethene using this activation approach was considered. Formaldehyde, employed in the second stage of the Alpha process, is a difficult substance to manufacture and handle, especially on a large scale. A preliminary study on the in situ production of anhydrous formaldehyde via the catalytic dehydrogenation of methanol was therefore performed. During this study, catalytic systems based on carbonate salts and / or transition metal complexes were considered. In the hope of reducing the number of steps required in the production of MMA, a new one-pot cascade reaction for the indirect α-methylenation of MeP with methanol was developed. Although the production of MMA using this system only proceeded with low efficiency, the obtained results serve as an important proof of concept for future developments in this area. Finally, the capacity of a series of simple bases to catalyse the condensation of MeP with formaldehyde was assessed as part of a fundamental study directed towards determining the factors that govern the efficiency of this reaction. In addition, the extent to which each base effects the deprotonation in the α-position of MeP was determined with the aid of deuterium labelling experiments. Similarly, using sodium propanoate as model base a rough estimate of the kinetics of deprotonation could be made based on the degree of deuterium incorporation over time. These studies suggested that the low efficiency of this condensation reaction is not caused by ineffective deprotonation but rather by the weak nucleophilicity of the generated carbanion. For this reason, attempts to increase the electrophilicity of formaldehyde through Mannich-type condensations reactions involving secondary amine and carboxylic acid additives were made.

Exploring novel functionalities in oxide ion conductors with excess oxygen

Zhang, Yaoqing — Wed, 22 Jun 2011 00:00:00 GMT

Abstract: Functional materials, particularly metal oxides, have been the focus of much attention in solid state chemistry for many years and impact every aspect of modern life. The approach adopted in this thesis to access desirable functionality for enhanced fundamental understanding is via modifying existing materials by deploying reducing synthetic procedures. This work spans several groups of inorganic crystalline materials, but is unified by the development of new properties within host compounds of particular relevance to solid oxide fuel cell technology, which allow interstitial oxide ion conduction at elevated temperatures. The Ca₁₂Al₁₄O₃₂e₂ electride was successfully synthesized by replacing the mobile extra-framework oxygen ions with electrons acting as anions. The high concentration of electrons in the C12A7 electride gives rise to an exceptionally high electronic conductivity of up to 245 S cm⁻¹ at room temperature. Making use of the high density of electrons in Ca₁₂Al₁₄O₃₂e₂ electride, the strong N-N bonds in N₂ was found to be broken when heating Ca₁₂Al₁₄O₃₂e₂ in a N₂ atmosphere. A reaction between silicate apatites and the titanium metal yielded another completely new electride material La₉.₀Sr₁.₀(SiO₄)₆O₂.₄e₀.₂ which was found to be a semiconductor. To fully understand the role of oxygen interstitials in silicate apatites, high-resolution transmission electron microscopy (HRTEM) was employed as the main technique in probing how the oxygen nonstoichiometry is accommodated at the atomic level. Atomic-resolution imaging of interstitial oxygen in La₉.₀Sr₁.₀(SiO₄)₆O₂.₅ proved to be a success in this thesis. Substitution of oxygen in 2a and interstitial sites with fluoride ions in La[subscript(8+y)]Sr[subscript(2- z)](SiO₄)₆O[subscript(2+(3y-2z)/2)] (0

Building complex systems based on simple molecular architectures

Robertson, Craig Collumbine — Wed, 30 Nov 2011 00:00:00 GMT

Abstract: Over the past twenty years molecules capable of templating their own synthesis, so called self–replicating molecules have gained prominence in the literature. We show herein that mixing the reagents for replicating molecules can produce a network of self–replicators which coexist and that the networks can be instructed by the addition of preformed template upon initiation of the reaction. Whilst self–replicating molecules offer the simplest form of replication, nature has evolved to utilise not minimal self–replication but reciprocal replication where one strand templates the formation of not an identical copy of itself but a reciprocal strand. Efforts thus far at producing a synthetic reciprocal replicating system are discussed and an alternative strategy to address the problems encountered is proposed and successfully implemented. The kinetic behaviour of a self–replicating reaction bears two distinctive time periods. Upon initiation, the reaction proceeds slowly as no template exists to catalyse the reaction. Upon production of the template, the reaction proceeds more rapidly via template direction. During this slow reaction period, the system is prone to mistakes as the reaction is slow and unselective. The creation of an [A•B] binary complex through non–covalent recognition of reagents allows for the reaction to proceed at an accelerated rate upon initiation however products of such a reaction are usually catalytically inert and do not promote further template directed reaction. A strategy to combine the desired behaviour of an [A•B] binary complex with the further template directed autocatalytic self–replicating reaction is described and implemented. Supramolecular polymers consist of repeating monomers which are held together by non–covalent interactions. The strong association of a self–replicating template dimer is comparable to that of supramolecular polymers reported thus far in the literature which are produced by cumbersome standard linear synthetic procedures. Herein the application of self–replication to the field of supramolecular polymer synthesis is discussed. As the autocatalytic reaction to produce the template monomers occurs under the same conditions as required to allow polymerisation to proceed, the polymer is able to spontaneously form in situ by self–replicating supramolecular polymerisation.

Kinetic analysis of homogeneous catalytic reactions

Robb, Lynzi M. — Tue, 01 Nov 2011 00:00:00 GMT

Abstract: Reaction progress kinetic analysis (RPKA) is a powerful tool for determining kinetic parameters of catalytic reactions. Many of the published articles that have used RPKA have employed reaction calorimetry for obtaining sufficient data to be reliable. The use of gas uptake measurements, in place of calorimetry is explored in this Thesis. Chapter 2 details the use of gas uptake measurements in establishing the order with respect to substrate and gas for the rhodium catalysed hydrogenation of 1-octene. Previous studies have used initial rate measurements to establish these orders and the reaction cycle is well known. The use of RPKA allows the same information to be established in two reactions. Chapter 3 focuses on the rhodium catalysed hydroformylation of 1-octene as it involves the reaction of one substrate with two gases. Using RPKA it is possible to determine the order in substrate and the overall order in gas, but it was found difficult to determine the order with respect to the individual gases using RPKA alone. Chapter 4 shows the palladium catalysed methoxycarbonylation of vinyl acetate. The reaction has two substrate concentrations changing simultaneously as well as a gas. This chapter shows that by careful design of experiments the orders with respect to each of these substrates and CO can be determined in minimal numbers of experiments. Chapter 5 focuses on the methoxycarbonylation of alkynes, which uses RPKA in complex multistep reactions, to establish if RPKA can be used to determine the kinetics with respect to the individual reacting components for each step. This study focuses on the methoxycarbonylation of phenylacetylene to produce methyl cinnamate as well as the methoxycarbonylation of both terminal and internal linear alkynes. These linear alkynes carbonylate to produce an α,β-unsaturated ester. The double bond is isomerised from its conjugated position along the chain to the terminal position where it is trapped and carbonylated to produce an α,ω-dieter product.

The molecular precursor approach to control the morphology of Co₃O₄ on support materials

de Jongh, Leigh-Anne — Mon, 14 Nov 2011 00:00:00 GMT

Abstract: In this project, the TMP method was employed to produce “active sites.” These active sites are for influencing and controlling the Co₃O₄ growth. One of the aims was to investigate what effect the grafting of the molecular precursor has on the nature and distribution of active sites on the various support materials. The second aim was to investigate the effect an increase in molecular precursor loading, in various impregnation steps, has on the nature and distribution of the active sites. The third aim was to investigate the effect of the steric constraints of ligand groups, by changing the molecular precursor, on the nature and distribution of active sites. The fourth aim was to use the different aspects discussed above and apply them to investigate what effect the above-mentioned modifications have on Co₃O₄ morphology. While another aim was to investigated what effect varying the quantity of Co(NO₃)₂•6H₂O has on Co₃O₄ morphology. Lastly, we investigated what effect varying the impregnation procedure and calcination temperature have on the Co₃O₄ morphology. The effect the support has on the phase of titanium molecular precursor was investigated using molecular precursor, ⁱPrOTi[OSi(O[superscript(t)]Bu₃)]₃. The supports used were Silica 922, NanoDur, Aerosil 200, Stöber spherical silica, SBA-15, mod MCM-41 and sMCM-41. The molecular precursor ⁱPrOTi[OSi(O[superscript(t)]Bu₃)]₃ was revealed to be in the orthorhombic TiO₂ with space group P(cab), normal brookite lattice, on Silica 922 after calcination but only an isolated area displaying this morphology. Generally we do not observe any TiO₂ on the support, which indicates that we have produce site-isolated sites, suggesting the TMP method has been successful on all of the various supports. The emphasis is placed on the effect of this molecular precursor and the respective support has on the Co₃O₄ morphology in Chapter 3. In this Chapter, a unique morphology was observed on Silica 922 which showed Co₃O₄ nanorods of cubic Co₃O₄ in the space group Fd-3m. Silica 922 was used for the remainder of the thesis to investigate the effect the quantity of molecular precursor has on the nature of active sites and Co₃O₄ morphology in Chapter 4. This support was also used to investigate the effect the amount of Co(NO₃)₂•6H₂O has on Co₃O₄ morphology in Chapter 5. This support was lastly used to investigate the steric constraints of the ligand groups, Ti[OSi(O[superscript(t)]Bu)₃]₄ (TiSi4), ⁱPrOTi[OSi(O[superscript(t)]Bu)₃]₃ (TiSi3), (OtBu)₃TiOSi(O[superscript(t)]Bu)₃ (TiSi) and the least sterically constrained Ti(OⁱPr)₄ has on the loading of precursor and Co₃O₄ morphology in Chapter 6.

Homogeneous gold catalysts : development of applications for gold(I) catalysts bearing N-heterocyclic carbene ligands

Müller, Ruben S. Ramon — Tue, 01 Nov 2011 00:00:00 GMT

Abstract: Recently established as an excellent activator for π-systems, efforts made in gold chemistry have increased enormously, resulting in a new ‘Gold Rush’ in chemistry. This thesis is a small contribution to it. There are two main aspects dominating the following chapters: gold catalysts bearing N-heterocyclic carbenes (NHCs) as supporting ligand, and H₂O assisted catalysis. The initial motivation for the presented work was to specifically demonstrate the potential of [(NHC)AuCl] as suitable catalysts for both known and new organic transformations and to establish these commercially available catalysts in gold chemistry, a field currently dominated by phosphine bearing gold complexes. Water mediated catalysis became the next repeatingly occurring aspect of this thesis by pursuing this initial aim and finding water as a useful solvent or agent, respectively. Various useful applications for gold-NHC complexes are presented, starting with the Meyer-Schuster rearrangement of propargylic alcohols as a continuation of the work realized with propargylic acetates by the Nolan group in early investigations on gold catalysts. Next, a study on alkyne hydration is presented with focus on low catalysts loadings to establish gold catalysts as a powerful choice for such a highly relevant reaction. The catalytic system is then advantageously adapted to a silver-free variation, still active at low catalyst loadings and with further mechanistic insight. Inspired by gold activation of alkynes, a gap of reactivity in gold catalysis is closed by a successful demonstration of nitrile hydration, a functionality previously thought to be inert towards gold activation. In this context, formation and role of dinuclear hydroxy-bridged gold complexes is investigated highlighting these complexes as a possible resting state of gold complexes in the presence of water. Next, the formation of furanones via alkoxylation/lactonization of propargylic propiolates is presented, an observation initially made when exploring the scope of the Meyer-Schuster rearrangement. The dissertation finally closes with the gold-catalyzed formation of amides, this time however achieved from aldoximes reacting via dehydration/hydration mechanism.

Reversible solid oxide fuel cells as energy conversion and storage devices

Gamble, Stephen R. — Wed, 30 Nov 2011 00:00:00 GMT

Abstract: A reversible solid oxide fuel cell (RSOFC) system could buffer intermittent electrical generation, e.g. wind, wave power by storing electrical energy as hydrogen and heat. RSOFC were fabricated by thermoplastic extrusion of (La₀.₈Sr₀.₂)₀.₉₅MnO[subscript(3−δ)] (LSM) ceramic support tubes, which were microstructurally stable with 55% porosity at 1350°C. A composite oxygen electrode of LSM-YSZ was applied, providing a homogeneous substrate for a 20 μm - 30 μm thick YSZ electrolyte. A dip-coated 8YSZ slurry, and a painted commercial 3YSZ ink gave sintered densities of 90% and nearly 100% at 1350°C, respectively. A porous NiO/YSZ fuel electrode was also painted on. A Ag/Cu reactive air braze was unsuccessful at forming a void-free joint between the RSOFC and a 316 stainless steel gas delivery tube, as the braze did not penetrate the oxidation layer on the steel. Two alumina-based ceramic cements failed to fully seal the cell to an alumina gas delivery tube, due to thermal expansion coefficient mismatches and porosity after curing. Therefore, the maximum open circuit voltage (OCV) obtained during RSOFC testing was 0.8 V at 440°C. LSM-YSZ symmetrical cell performance measurements with oxygen pressure showed a diffusion polarisation, which was assigned to dissociative adsorption and surface diffusion of oxygen species. A collaborative RSOFC system software model showed ohmic and activation losses dominated the RSOFC, and diffusion losses were insignificant. Pressurisation from 1 to 70 bar increased the RSOFC Nernst voltage by 11% at 900°C, and reduced the entropy of the gases, reducing heat production and increasing electrical efficiency. A 500 kg Sn/Cu phase change heat store prevented the system overheating. Over a 16 h discharge-charge RSOFC cycle in the range 5 mol.% - 95 mol.% hydrogen in steam, at 20.4 A per cell or 3250 A m⁻², the electrical energy storage efficiency was 64.4%.

Crystalline polymer and small molecule electrolytes

Ainsworth, David A. — Wed, 23 Jun 2010 00:00:00 GMT

Abstract: The research presented in this thesis includes a detailed investigation into factors influencing ionic conductivity in the crystalline polymer electrolyte PEO₆:LiPF₆. It has previously been shown that preparing PEO₆:LiPF₆ with PEO modified with larger –OC₂H₅ end groups increases ionic conductivity by one order of magnitude [¹],primarily due to disruption of the crystal structure caused by the inclusion of the larger end groups. In this study it is shown that by reducing PEO molecular weight in crystalline PEO₆:LiPF₆ ionic conductivity is also increased. This was attributed to an increasing concentration of polymer chain end regions upon lowering molecular weight resulting in the creation of more defects, as well as possible increases in crystallite size resulting in longer continuous pathways for ion transport. Similar results were observed using both polydispersed and monodispersed PEO to prepare complexes. In addition, it is demonstrated here that ionic conductivity in crystalline polymerelectrolytes is not confined to PEO₆:LiXF₆ (X=P, As, Sb)[²][³] type materials. The structures and ionic conductivity data are reported for a series of new crystalline polymer complexes: the alkali metal electrolytes. They are composed of low molecular weight PEO and different alkali metal hexafluoro salts (Na⁺, K⁺ and Rb⁺), and include the best conductor poly(ethylene oxide)₈:NaAsF₆ discovered to date [⁴], with a conductivity 1.5 orders of magnitude higher than poly(ethylene oxide)₆:LiAsF₆. A new class of solid ion conductor is reported: the crystalline small-molecule electrolytes. Such materials consist of lithium salts dissolved in low molecular weight glyme molecules [CH₃O(CH₂CH₂O)[subscript(n)]CH₃, n=1-12], forming crystalline complexes [⁵][⁶]. These materials are soft solids unlike ceramic electrolytes and unlike polymer electrolytes they are highly crystalline, are of low molecular weight and have no polydispersity. By varying the number of repeat units in the glyme molecule, many complexes may be prepared with a wide variety of structures. Here, ionic conductivity and cation transference number (t₊) data for several such complexes is presented [⁷][⁸][⁹].These complexes have appreciable ionic conductivities for crystalline complexes and their t₊ values vary markedly depending on the glyme molecule utilized. The differences in t₊ values can be directly attributed to differences in their crystal structures. [¹] Staunton, E., Andreev, Y.G. & Bruce, P.G. Factors influencing the conductivity of crystalline polymer electrolytes. Faraday Discussions 134, 143-156 (2007). [²] Gadjourova, Z., Andreev, Y.G., Tunstall, D.P. & Bruce, P.G. Ionic conductivity in crystalline polymer electrolytes. Nature 412, 6846 (2001). [³] Stoeva, Z., Martin-Litas, I., Staunton, I., Andreev, Y.G. & Bruce, B.G. Ionic Conductivity in the Crystalline Polymer Electrolytes PEO₆:LiXF₆, X = P, As, Sb. J. Am. Chem. Soc. 125, 4619-4626(2003). [⁴] Zhang, C., Gamble, S., Ainsworth, D., Slawin, A.M.Z., Andreev, Y.G. & Bruce, P.G. Alkali metal crystalline polymer electrolytes. Nature Materials 8, 580-584 (2009). [⁵] Henderson, W.A., Brooks, N.R., Brennessel, W.W. & Young Jr, V.G. Triglyme-Li⁺ Cation Solvate Structures: Models for Amorphous Concentrated Liquid and Polymer Electrolytes (I). Chem. Mater. 15, 4679-4684 (2003). [⁶] Henderson, W.A., Brooks, N.R. & Young Jr, V.G. Tetraglyme-Li⁺ Cation Solvate Structures: Models for Amorphous Concentrated Liquid and Polymer Electrolytes (II). Chem. Mater. 15, 4685-4690 (2003). [⁷] Zhang, C., Andreev, Y.G. & Bruce, P.G. Crystalline small-molecule electrolytes. Angewandte Chemie, International Edition 46, 2848-2850 (2007). [⁸] Zhang, C., Ainsworth, D., Andreev, Y.G. & Bruce, P.G. Ionic Conductivity in the Solid Glyme Complexes [CH₃O(CH₂CH₂O)[subscript(n)]CH₃]:LiAsF₆ (n = 3,4). J. Am. Chem. Soc. 129, 8700- 8701 (2007). [⁹] Zhang, C., Lilley, S.J., Ainsworth, D., Staunton, E., Andreev, Y.G., Slawin, A.M.Z. & Bruce, P.G. Structure and Conductivity of Small-Molecule Electrolytes [CH₃O(CH₂CH₂O)[subscript(n)]CH₃]:LiAsF₆ (n = 8-12). Chem. Mater. 20, 4039-4044 (2008).

Inorganic organic composite polymer coatings based on functionalised polyhedral oligomeric silsesquioxanes

Robertson, Duncan J. — Wed, 01 Jun 2011 00:00:00 GMT

Abstract: A study has been undertaken with the aim of preparing appropriately functionalised polyhedral oligomeric silsesquioxane (POSS) compounds to be used in ambient-cure chemistry. Numerous epoxy-functionalised compounds have been designed and synthesised and these materials have been characterised in order to determine their chemical structure. These compounds have also been incorporated into existing polymerisation reactions to test whether these materials could be used in the protective coatings industry. A glycidyl-functionalised POSS compound was prepared and reacted with a series of amines to produce ambient-cured polymers which could be used in the coatings industry. There were also a series of experiments undertaken on these polymers to identify the processes at work and to test how they compare to industry standards. As a direct comparator to this work, another set of results was obtained with a cyclic-siloxane material incorporated into the systems in place of the POSS. A linear analogue was also tested. The reactions proved to be a success and an appropriate data-set was yielded. During the synthesis of POSS precursors there are a series of residual materials produced. These materials have also been studied in this project. It was anticipated that these would behave in a similar way to the POSS compounds however the same functionality was never achieved as had been with the POSS. Ambient-cured polymers have also been targeted from a basic hydride-functionalised POSS compound and a polybutadiene system. The appropriate reactions unfortunately never took place as anticipated but there were a series of tests undertaken to identify the processes at work. A study has also been undertaken using near-I.R. to track the curing reactions. From this data, the extent of cure could be studied and the make-up of the reaction could be investigated in more detail.

The assembly of molecular networks at surfaces : towards novel enantioselective heterogeneous catalysts

Jensen, Sean — Fri, 01 Jan 2010 00:00:00 GMT

Abstract: Understanding the supramolecular interactions governing the self-assembly of molecular building blocks upon surfaces is fundamental to the design of new devices such as sensors or catalysts. Successful heterogeneous enantioselective catalysts have relied upon the adsorption of ‘chiral modifiers’, usually chiral amino acids, onto reactive metal surfaces. One of the most researched examples is the hydrogenation of β-ketoesters using nickel-based catalysts. The stability of the chiral modifiers upon catalyst surfaces is a major obstacle to the industrial scale-up of this reaction. In this study, the replacement of conventional modifiers with porous, chiral and functionalised self-assembled networks is investigated. Perylene-3,4,9,10-tetracarboxylic diimide (PTCDI) and melamine (1,3,5-triazine,-2,4,6-triamine) have been shown to form hydrogen bonded networks on Ag-Si(111)√3x√3R30° in ultra-high vacuum (UHV) and Au(111) substrates in UHV and ambient conditions, these networks are capable of hosting guest molecules. These networks are investigated further in this study. In UHV, the behaviour of the components and network formation on Ni(111) is probed using scanning tunnelling microscopy (STM) and temperature-programmed desorption (TPD). The stability of the PTCDI-melamine network on Au(111) was analysed using TPD. Metal coordination interactions between each of the network components and nickel upon the Au(111) surface were examined by STM before testing the ability of the network to act as a template for metal growth. Finally, a number of polymerisation reactions are investigated with a view to replacing chiral modifiers with porous, chiral, functionalised covalent networks. Periodic covalent networks should possess the greater chemical and thermal stability required for more widespread use. In UHV and ambient conditions, STM is used to monitor the progress of surface-confined reactions on Au(111) and characterise the resultant covalent structures.

Trifluoro alkyl oligo(ethylene glycol)-terminated alkanethiol self-assembled monolayers : synthesis, characterisation, and protein adsorption properties

Bonnet, Nelly — Fri, 01 Jan 2010 00:00:00 GMT

Abstract: Self-assembled monolayers have been proven to be well-ordered and to give stable ultrathin films. They show a remarkably high diversity with respect to their functionalisation giving rise to many possible applications. This thesis is focused on the potential use of these molecular thin films in life sciences. The reproduction of a membrane-like environment with these tightly packed and organized unimolecular layers has led to important breakthroughs in their nanotechnological application as biomaterials. Their straightforward modification allows the chemical and physical properties of biological interfaces to be altered. In particular, Oligo(ethylene glycol) based alkanethiol self-assembled monolayers were intensively studied as biointerfaces for their ability to resist the non specific adsorption of proteins. The electrostatic repulsion which originates from these monolayers was seen as one of the possible factors causing this protein repulsion. On the other hand proteins adsorb on alkanethiol self-assembled monolayers. This can be partially attributed to an attractive hydrophobic interaction between the biomolecules and the surface. As a result of the understanding of these two driving forces which are relevant for non-specific protein adsorption/repulsion, novel self-assembling molecules were tailored in an attempt to adjust the adsorption of proteins at the SAM-liquid interface. This was conceivable with these newly designed SAMs since they allow a combination of these forces. We have chosen the ionic strength of the liquid environment as the external parameter which could act on the amount of adsorbed proteins because the electrostatic force created by oligo(ethylene glycol) groups depends on it. In addition to the synthesis of six new molecules, the preparation and characterisation of the novel self-assembled monolayers are reported in this thesis. The density of the monolayers was estimated by X-ray photoelectron spectroscopy and ellipsometry, and the wettability properties were studied by measuring the contact angle. The total force acting on proteins from the SAMs was studied with an atomic force microscope, equipped with a tip mimicking proteins, by measuring force-distance curves. An in-situ technique was investigated in order to study the influence of the variation of this total force on the quantity of adsorbed proteins by varying the ionic strength.

N-heterocyclic carbene ligands in palladium and iridium organometallic chemistry

Diebolt, Olivier — Fri, 01 Jan 2010 00:00:00 GMT

Abstract: The use of ligand in transition-metal catalysed reactions has had a considerable impact. The present manuscript aims at showing the influence of ligands in the palladium catalysed Suzuki-Miyaura cross-coupling reaction. In chapter one, the mechanism of this reaction will be described based on the numerous contribution published in the literature. It will be shown that the electronic and steric properties of the ligands have a huge repercussion on the catalytic activity of the metal. In the second chapter, the electronic and steric properties of the widely used Buchwald-phosphine ligand will be investigated. For this purpose, bis-carbonyl iridium(I) complexes were synthesized and their characterization allowed determining their TEP (Tolman electronic parameter) and their buried volume %V[subscript(bur)]. Then three next chapters of this thesis will focus on the syntheses and characterizations of new palladium complexes bearing N-heterocyclic carbenes (NHC). Their design was made in a view to obtain high activity in cross coupling reaction, particularly in the Suzuki-Miyaura cross coupling. Their activation under the catalytic conditions leads to the formation of palladium(0) species that can be mono- or bis-ligated. The influence of the ligand on the catalyst activity will be discussed. A palladium(II) precatalyst leading to mono-ligated active species will be described. Its activity in cross-coupling is very good, since activated and non-activated aryl chlorides could be coupled with aryl boronic acids at room temperature using low catalyst loadings. Unfortunately, the catalyst activity decreased with temperature. This result showed the fragility of the mono-ligated active species. In a view to obtain more robust catalysts that can perform high turnover numbers, new palladium(II) precatalysts bearing two ancillary ligands were developed. Mixed systems NHC- phosphites and NHC-phosphines are described. NHC-phosphites precatalysts displayed very good activity, but the phosphites are unfortunately sensitive to reaction conditions, limiting their role of active species shield. NHC-phosphine bearing complexes were highly active and could perform up to 10,000 turnovers with unactivated aryl chlorides. Very interestingly, these catalysts were also able to couple benzylchlorides and allyl chlorides with a wide range of boronic acids at very low catalyst loadings. These reactions had also the great advantage to proceed in aqueous solvents at very high substrate concentration. The activation mechanism of these complexes was investigated. Dichloropalladium(II) complexes were reduced under the catalytic conditions to lead palladium(0) species. Therein, it is shown that this reduction step was rate-determining in catalysis. Some palladium(0) intermediates xxiv were synthesized and showed good to excellent activities at low temperature under the exact same conditions. They displayed high reactivity towards oxygen and moisture and have to be handled under inert atmosphere. A particular complex had the ability to react with molecular dioxygen to form a stable peroxo-complex. Interestingly, this complex displayed excellent activity in water under aerobic conditions. This system was of great advantage since the reaction could be set up under air using cheap and user-friendly reagents displaying low toxicity. Moreover, the readily available distilled water used as solvent did not require prior degassing. Symmetrical and unsymmetrical bis-NHC palladium(0) complexes were successfully synthesized. They display excellent activity in the Suzuki-Miyaura cross coupling and turnover frequencies as high as 300 could be obtained at room temperature with unactivated arylchlorides and arylboronic acids. These complexes were also found excellent catalysts for the coupling of benzylchlorides with arylboronic acids. Mechanistic studies showed that no ligand dissociation occurred during the coupling suggesting as bis-ligated active species.

Solvothermal chemistry of luminescent lanthanide fluorides

Jayasundera, Anil — Thu, 01 Jan 2009 00:00:00 GMT

Abstract: Exploration of novel lanthanide fluoride framework materials in inorganic-organic hybrid systems under solvothermal conditions towards development of new luminescent materials is discussed. X-ray single crystal and powder diffraction methods have been used as crystallographic characterisation techniques. Determination and study of luminescence properties for selected hybrid materials has also been carried out. The first organically templated luminescent lanthanide fluoride framework, [C₂N₂H₁₀]₀.₅ [Ln₂F₇] (Ln= Nd, Tb, Dy, Ho, Er, Yb and Lu), has been synthesised and characterised. This structure type consists of a three-dimensional yttrium fluoride framework incorporating two similar, but crystallographically distinct, yttrium sites. Photoluminescence studies of [C₂N₂H₁₀]₀.₅ [Y₂F₇]: Ln³⁺ (Ln³⁺ = Gd³⁺, Eu³⁺ and Tb³⁺) have been explored and characteristic luminescence emissions are reported. An inorganic-organic hybrid indium fluoride and its scandium fluoride analogue, [C₄H₁₄N₂][MF₅](M=In and Sc) is reported. The structure consists of infinite trans vertex sharing (InF₅)[subscript(∞)] chains, which are linked via H-bonded organic moieties. The scandium and fluorine local environments of [C₄H₁₄N₂][ScF₅] are characterised by ¹⁹F, and ⁴⁵Sc solid-state MAS NMR spectroscopies. A single scandium site has been confirmed by ⁴⁵Sc MAS NMR. ¹⁹F MAS NMR clearly differentiates between bridging and terminal fluorine. The photoluminescence properties of these complexes, [C₄H₁₄N₂][In[subscript(1-x)] Ln[subscript(x)]F₅] (Ln=Tb and/or Eu), have been explored. The optimum composition for Eu³⁺ doped samples occurs at x = 0.05 Eu³⁺ and the “asymmetry ratio” of R = I₅₉₀/I₆₁₅ ( ⁵D₀ → ⁷F₂ and ⁵D₀ → ⁷F₁) gives a clear picture of the sensitivity for crystal field of the compound. For x = 0.08 Tb³⁺, a strong down-conversion fluorescence corresponding to ⁵D₄ → ⁷F₅ (green at 543.5 nm) occurs. In addition, a Tb³⁺/Eu³⁺ co-doped sample exhibits a combination of green (Tb³⁺) and orange (Eu³⁺) luminescence, with Tb³⁺ enhancing the emission of Eu³⁺ in this host. Exploration of novel indium, aluminium, and zirconium fluoride crystal structures with potential luminescent properties has also been undertaken. A chiolite-like phase K₅In₃F₁₄ (space group P4/mnc) has been synthesised. No phase transition occurs over the temperature range 113K< T< 293 K, as has been seen in other chiolite-like structures. An organically templated indium fluoride, [NH₄]₃[C₆H₂₁N₄]₂[In₄F₂₁] has been prepared; this features the trimeric unit [In₃F₁₅]³⁻ which appears to be the first of its type in a metal fluoride. A new hybrid fluoride, Sr[N₂C₂H₁₀]₂[Al₂F₁₂].H₂O has been synthesised. Because the ionic radius of Eu²⁺ is similar to that of Sr ²⁺ this may be a potential host for blue luminescent Eu²⁺. The new material KZrF₅.H₂O shows pentagonal-bipyramidal geometry of Zr⁴⁺ with a polar space group, Pb2₁m, which may potentially have ferroelectric properties.

The development of novel myosin inhibitors

Lawson, Christopher Peter Abiodun Tevi — Wed, 01 Jun 2011 00:00:00 GMT

Abstract: This thesis describes a structure activity relationship (SAR) study on the recently discovered small molecule tool blebbistatin (S)-21 with particular emphasis on the development of novel synthetic protocols suitable for the rapid synthesis of libraries of blebbistatin analogues. These analogues are potentially of use as novel myosin inhibitors Chapter 1 introduces the concept of chemical biology with particular emphasis on chemical genetics. This approach has rekindled the search for new chemical tools for the investigation of biological systems. The success of blebbistatin (S)-21, which was identified in a chemical genetic study, as a research tool was also discussed. The link between several myosin classes and genetic diseases such as coeliac disease, Crohn’s disease, deafness, dermatitis, familial hypertrophic cardiomyopathy, Griscelli disease and ulcerative colitis indicate that potent inhibitors which show selectivity towards specific myosin isoforms may be of great value as tools for the study of these conditions. The plan for the SAR study around (S)-21 was outlined. Chapter 2 describes the studies undertaken to develop an efficient synthetic route to N1-alkyl analogues of (S)-21 suitable for the parallel synthesis of chemical collections. These studies culminated in the synthesis of an intermediate (S)-66 from which novel N1-alkyl analogues were synthesised. The biological evaluation of these N1-alkyl analogues was discussed. Chapter 3 describes the development of a protocol suitable for the parallel synthesis of collections of N1-aryl analogues of (S)-21 via the intermediate 66. The application of this protocol to the synthesis of a collection of racemic N1-aryl and heteroaryl analogues of (S)-21 and their biological evaluation was presented. Chapter 4 describes the successful rational design and synthesis of a novel fused thiophene ring containing inhibitor of myosin II. The structure of this compound was proposed by modelling of the existing co-crystal structure of (S)-21 bound to the metastable state of Dictyostelium discoideum myosin II (S1dC) and sought to optimise the π-π stacking interaction displayed by (S)-21 with the tyrosine 261 residue within its binding site. The biological evaluation of this novel analogue was discussed. In Chapter 5 the studies conducted to investigate the contribution of ring-C to the binding affinity of (S)-21 were described. The development of alternate routes to (S)-21, in an attempt to avoid difficulties experienced during the synthesis of some analogues of (S)-21, are described. The synthesis and biological investigation of the fluorescent dye PPBA whose binding site has been suggested to overlap with that of (S)-21 was also reported.

Synthesis and evaluation of α-fluoro analogues of capsaicin and 2-(aminomethyl)piperidine derivatives

Moraux, Thomas — Tue, 09 Aug 2011 00:00:00 GMT

Abstract: Chapter 1 gives an overview of the fluorine chemistry field, from its early developments to recent applications in medicinal chemistry. The development of asymmetric electrophilic or nucleophilic installation of fluorine in organic molecules is highlighten. Chapter 2 of this thesis discusses the enantioselective synthesis of α-fluoroamides. The study is applied to the synthesis of fluoroenantiomers of the bioactive molecule capsaicin and short-chain analogues. The biological activity of these compounds is assayed with the TRPV1 receptor. Results show that enantioselective α-fluoroamides (R)-97, (R)-99 and (S)-99 can generate differentiated biological responses, from TRPV1 agonists to TRPV1 antagonists. Chapter 3 focuses on the optimisation and development of 2-(aminomethyl)piperidine (R)-251 dihydrochloride. The development of 2-(aminomethyl)piperidine (R)-251 as its ditetrafluoroborate salt proved to offer excellent reactivity and solubility for the preparation of derivatives. This tetrafluoroborate salt was used to improve the syntheses of organocatalysts 2,2,2-trifluoro-N-(piperidin-2-ylmethyl)acetamide 363 and 4-methyl-N-(piperidin-2-ylmethyl)benzenesulfonamide 364.The catalytic properties of these latter two molecules for asymmetric Mannich reaction is demonstrated. Both (R)-363 and (R)-364 show up to 86% ee, in a typical 20 mol% loading, but loading of (R)-363 as low as 5 mol% still induces the catalysis.

An atomistic approach to graphene and carbon clusters grown on a transition metal surface

Wang, Bo — Wed, 01 Jun 2011 00:00:00 GMT

Abstract: In this thesis, graphene (i.e. monolayer carbon film) and carbon clusters supported on a transition metal surface are systematically studied by local probe techniques, with respect to their structures, electronic properties and formation mechanisms. The main tools used are low-temperature scanning tunnelling microscopy and spectroscopy (STM and STS), which are introduced in Chapter 2. The mechanism of the resonance tunnelling at electron energies higher than the work function of the surface is discussed in detail, and a qualitative explanation of the Gundlach oscillations in the corresponding spectroscopy is presented. Epitaxial graphene synthesised on the Rh(111) surface by ethylene dehydrogenation is investigated by STM in Chapter 4. Such carbon film exhibits a hexagonal Moiré pattern due to a lattice mismatch between graphene and the rhodium substrate. The periodicity and local registries of the graphene/Rh(111) superstructure are carefully analysed. Based on a thorough discussion about the “commensurate vs. incommensurate” nature of the Moiré pattern in surface science field, the graphene/Rh(111) system is identified to have a non-simple-commensurate superstructure. The surface electronic properties and geometric buckling of graphene/Rh(111) are investigated by resonance tunnelling spectroscopy (RTS) and density functional theory (DFT) calculations in Chapter 5. Spectroscopy measurements reveal a modulation of the electronic surface potential (or work function Φ) across the supercell of epitaxial graphene. Based on the microscopy/spectroscopy data and the extended DFT calculations, we examined the electronic coupling of the various local C-Rh registries, and identified both experimentally and theoretically the local atomic configurations of maximum and minimum chemical bonding between graphene and the rhodium substrate. We studied in Chapter 6 the growth mechanism of graphene on Rh(111) at elevated temperatures. This part starts by investigating the dehydrogenation of ethylene into ethylidyne. When the dehydrogenation process is complete, monodispersed carbon species, identified as 7C6, are found to dominate the cluster population on the rhodium terraces. A significant coalescence of the 7C6 clusters into graphene islands occurs at temperatures higher than 873 K. The structural and electronic properties of the 7C6 carbon clusters are examined by high-resolution STM and STS, and compared with coronene molecules, i.e. the hydrogenated analogues of 7C6. DFT calculations are further used to explain the stability of 7C6 supported on the Rh(111) surface, and also the structural characteristics of such magic-sized carbon clusters.

Synthesis and structure-property relationships in selected metal fluorides

Reisinger, Sandra A. — Fri, 01 Jun 2012 00:00:00 GMT

Abstract: There has been an increase in the interest in fluoride materials over the last decade. This interest has focused on multiferroic materials and kagome lattices, to name but a few areas. This thesis focuses on the synthesis and crystallographic characterisation of selected transition metal fluorides and oxyfluorides. Work is presented on the tetragonal tungsten bronze solid solutions of K[subscript(x)]FeF₃, where x = 0.58 and x ≈ 0.5, and the copper analogue, K₃Cu₃Fe₂F₁₅; the kagome structure of Cs₂ZrCu₃F₁₂; and hydrothermal reactions using vanadium, manganese, or molybdenum as the transition metals in the formation of new fluorides and oxyfluorides. The tetragonal tungsten bronze compounds K[subscript(x)]FeF₃ (x = 0.58 and x ≈ 0.5) are both tetragonal at 500 K. In the variant with the lower K-content, there is a clear phase separation into two tetragonal phases even at this temperature. The K₀.₅₈FeF₃ sample separates into two distinct phases below 340 K to possess one tetragonal and one orthorhombic phase. Then at roughly 300 K, both samples undergo a phase transition where the tetragonal phase in the P4/mbm space group in K₀.₅₈FeF₃ changes to an orthorhombic phase with a larger unit cell; and the tetragonal phase in P4₂bc for the K₀.₅FeF₃ sample changes to the same orthorhombic model, whilst the P4/mbm model remains unchanged. The evolution of the lattice parameters and phase fractions is studied in detail using synchrotron powder X-ray diffraction (sPXRD). The kagome structure investigated, Cs₂ZrCu₃F₁₂, possesses the “ideal” kagome lattice at room temperature, but previous work has suggested that there is a phase transition at 225 K. The two structures are determined by single crystal X-ray diffraction at 300 K and 125 K. Variable temperature sPXRD studies are performed between these two temperature ranges to determine the phase evolution as a function of temperature. The structure changes from a rhombohedral to a monoclinic phase at low temperature. This is the result of the buckling of the kagome layers at the phase transition. The Zr⁴⁺ ion changes from 6 to 7 coordinate and this is seen as the main driving force for the distortion of the kagome layer from its “ideal” planar arrangement. ii The phase transition is first-order as seen from the electrical impedance measurements. The hydrothermal reactions presented reveal seven new materials and their crystal structures. Sr₂V₂F₁₀·H₂O is new and found to be isostructural to Sr₂Fe₂F₁₀·H₂O. BaVO₂F₃ is a cubic material that is potentially piezoelectric. Two hybrid organic inorganic manganese compounds are reported. The ladder structure (C₃N₂H₅)[Mn₂F₆(H₂O)₂] crystallises in a polar space group and shows promise as a candidate for multiferroic studies. The second hybrid material, (C₇NH₁₆)₂[MnF₅(H₂O)]·2H₂O, crystallises in a centrosymmetric space group. The Mo hybrid materials are all centrosymmetric and possess isolated molybdenum-centred monomeric or dimeric octahedral units.

Studies on the synthesis of dicaffeoylquinic acid conjugates

Raheem, Kolawole Saki — Tue, 01 Nov 2011 00:00:00 GMT

Abstract: Dicaffeoylquinic acid (DCQA) is a natural polyphenolic compound widely distributed in plants such as coffee beans, which possesses a range of pharmacological activities. Herein, is reported studies undertaken towards the first total synthesis of 3,5-DCQA conjugates. Two synthetic routes were investigated. The first route involves a seven step sequence beginning from quinic acid. The overall yield via this synthetic approach was 30%. The key steps involved in the sequence were a regioselective benzylation of the C-3-hydroxyl group followed by silyl protection of the C-1 and C-4 hydroxyl groups. Deprotection of the benzyl group by hydrogenolysis and opening of the lactone afforded the 3,5-diol. Esterification of the 3,5-diol with 3,4-tert-butyldimethylsilyl caffeoyl chloride afforded the di-ester. Removal of the protecting groups afforded 3,5-DCQA. The second route involved selective protection of the C-3-hydroxyl group with silyl followed by benzylation of the C-1 and C-3 hydroxyl groups. Saponification of the lactone ring followed by benzylation of the carboxylic acid gave the benzyl ester. Silyl deprotection afforded the 3,5-diol. The 3,5-diol was subsequently esterified by refluxing in toluene with commercially available Meldrum’s acid. In the final step, the synthesis of 3,5-DCQA was achieved by a Knoevenagel condensation of 3,4-dihydroxybenzaldehyde and a malonate ester of quinic acid. An efficient method for the synthesis of possible metabolites of quinic acid conjugates was also described. This protocol employs N-(4-methoxyphenyl)-trifluoroacetimidate glucuronyl as the donor. The key reaction in this sequence was the coupling of N-(4-methoxyphenyl)-trifluoroacetimidate glucuronyl with 4-hydroxy-3-methoxy-benzaldehyde.

Design and synthesis of chemical probes for the plekstrin homology domain

Elliott, Thomas S. — Tue, 30 Nov 2010 00:00:00 GMT

Abstract: The phosphatidylinositol polyphosphates play a fundamental role in intracellular signalling. Of particular importance is phosphatidylinositol 3,4,5-trisphosphate [PtdIns(3,4,5)P₃], which acts by recruiting effector proteins to the cell membrane. PtdIns(3,4,5)P₃ interacts with its protein targets through selective binding domains that include the pleckstrin homology (PH) domain. The PH-domain-containing kinase, protein kinase B (PKB/Akt), which interacts with PtdIns(3,4,5)P₃, is upregulated in ~15 human malignancies. Significantly, inhibition of the PtdIns(3,4,5)P₃-PKB interaction has proved viable as a point of therapeutic intervention.There is currently a lack of small molecule probes that selectively interact with a given PH domain. Consequently, it is impossible to dissect the cellular function of PH-domain-containing proteins at a molecular level. To address this problem, we have designed and synthesised a number of derivatives of the PtdIns(3,4,5)P₃ inositol head-group – Ins(1,3,4,5)P₄. Replacement of the 5-position phosphate with a range of phosphate bioisosteres afforded compounds that displayed no binding affinity for the PH-domain of general receptor for phosphoinositides 1 (GRP1). However, it was shown that the 5-position sulfamate analogue displayed selectivity for the PH-domain of PKB. The methylphosphate biosiostere at the 1-position displayed binding for both the GRP1 PH-domain as well as the PKB PH-domain. These results demonstrate that subtle modification of the Ins(1,3,4,5)P₄ structure allows the synthesis of compounds that interact selectively with a given PH domain. We will now use these results for the synthesis of a second generation of compounds with improved PH-domain affinity and selectivity.

Artificial metalloenzymes : modified proteins as tuneable transition metal catalysts

Deuss, Peter J. — Wed, 22 Jun 2011 00:00:00 GMT

Abstract: This thesis describes the design, synthesis and application of artificial metalloenzymes for transition metal catalysed reactions not performed by natural enzymes. Unique cysteine containing protein templates were covalently modified with transition metal ligand complexes that generate catalytic activity, which allows for the use of virtually any protein template. SCP-2L was selected as template for the linear hydrophobic tunnel that traverses the protein, which has high affinity for linear aliphatic molecules. The use of catalysts based on this protein to induce increased activity in the biphasic hydroformylation of linear α-olefins is investigated in this work. For this purpose, unique cysteine containing mutants of SCP-2L were modified with phosphine ligands by application of a novel bioconjugation procedure. Application of rhodium adducts of the phosphine modified protein constructs led to up to a 100 fold increase of the turn over numbers was measured compared to a Rh/TPPTS model system which is used in industry. Furthermore, good selectivity towards the linear product was observed. If it can be confirmed that the found catalytic results truly are the result of substrate encapsulation by the protein scaffold, this system represents the first rationally designed artificial metalloenzyme which exploits the shape selectivity of the protein scaffold to direct the outcome of a catalytic reaction. In addition, a study was performed for the development of enantioselective artificial metalloenzymes. Nitrogen ligands were covalently introduced in SCP-2L and the obtained conjugates were applied in the copper catalysed Diels-Alder and Michael addition reaction. A promising 25% ee was found for the Diels-Alder reaction between azachalcone and cyclopentadiene using one of the created constructs. Further development of these catalyst systems with the use of both synthetic (e.g. optimisation of ligand structure) and biomolecular tools (e.g. optimisation of protein environment) for optimisation can lead to very efficient and enantioselective conversions in the future. Description: Electronic version excludes material for which permission has not been granted by the rights holder

Novel lithium-ion host materials for electrode applications

Lyness, Christopher — Wed, 22 Jun 2011 00:00:00 GMT

Abstract: Two novel lithium host materials were investigated using structural and electrochemical analysis; the cathode material Li₂CoSiO₄ and the LiMO₂ class of anodes (where M is a transition metal ion). Li₂CoSiO₄ materials were produced utilising a combination of solid state and hydrothermal synthesis conditions. Three Li₂CoSiO₄ polymorphs were synthesised; β[subscript(I)], β[subscript(II)] and γ₀. The Li₂CoSiO₄ polymorphs formed structures based around a distorted Li₃PO₄ structure. The β[subscript(II)] material was indexed to a Pmn2₁ space group, the β[subscript(I)] polymorph to Pbn2₁ and the γ₀ material was indexed to the P2₁/n space group. A varying degree of cation mixing between lithium and cobalt sites was observed across the polymorphs. The β[subscript(II)] polymorph produced 210mAh/g of capacity on first charge, with a first discharge capacity of 67mAh/g. It was found that the β[subscript(I)] material converted to the β[subscript(II)] polymorph during first charge. The γ₀ polymorph showed almost negligible electrochemical performance. Capacity retention of all polymorphs was poor, diminishing significantly by the tenth cycle. The effect of mechanical milling and carbon coating upon β[subscript(II)], β[subscript(I)] and γ₀ materials was also investigated. Various Li[subscript(1+x)]V[subscript(1-x)]O₂ materials (where 0≤X≤0.2) were produced through solid state synthesis. LiVO₂ was found to convert to Li₂VO₂ on discharge, this process was found to be strongly dependent on the amount of excess lithium in the system. The Li₁.₀₈V₀.₉₂O₂ material had the highest first discharge capacity at 310mAh/g. It was found that the initial discharge consisted of several distinct electrochemical processes, connected by a complicated relationship, with significant irreversible capacity on first discharge. Several other LiMO₂ systems were investigated for their ability to convert to layered Li₂MO₂ structures on low voltage discharge. While LiCoO₂ failed to convert to a Li₂CoO₂ structure, LiMn₀.₅Ni₀.₅O₂ underwent an addition type reaction to form Li₂Mn₀.₅Ni₀.₅O₂. A previously unknown Li₂Ni[subscript(X)]Co[subscript(1-X)]O₂ structure was observed, identified during the discharge of LiNi₀.₃₃Co₀.₆₆O₂.

Enantioselective hydrogenation using ruthenium complexes of tridentate ligands

Phillips, Scott D. — Wed, 22 Jun 2011 00:00:00 GMT

Abstract: This thesis describes the development of the [RuCl₂(P^N^N)L] catalytic system for asymmetric hydrogenation. It has been demonstrated that the current system is efficient in preparing a range of bulky chiral alcohols in good enantioselectivity, many of which are likely to be inaccessible using the more classic [RuCl₂(P^P)N^N)] system developed by Noyori and coworkers. It has been shown that the current system is tolerant of a range of substrate electronic effects as well as the presence of heteroaromatic functionality, thus showing its applicability in synthesis. This has been extended to prepare a number of bulky derivatives of synthetically important molecules. The demonstration of this is significant as in drug design, for example, studies that aim to extend lipophilicity or steric bulk make the ability to prepare alcohols across the full range of steric properties important. We have shown that chiral alcohols with adjacent gem-dimethyl groups can be prepared in high enantioselectivity and their conversion into other valuable molecules, such as chiral lactones has been demonstrated. Detailed mechanistic studies have been undertaken for the present system in order to aid rational design of new, more active and selective catalysts. A number of achiral variants of the original system have been prepared and the key features of ligand structure for efficient catalysis have been identified. This was accomplished by rigorous kinetic analysis of each complex, using specialist gas-uptake monitoring equipment. The key features of catalyst structure and optimal reaction conditions for efficient asymmetric hydrogenation have been identified. Our greater understanding of the present system allowed us to rationally design new catalysts of for enantioselective hydrogenation. Our aim was to be able to tune the catalyst structure to carry out hydrogenation of a greater variety of ketone substrate with high activity and selectivity. We have successfully prepared second generation catalysts that show enhanced enantioselectivity for a variety of substrates, many of which were problematic with the Noyori system.

Exploring and exploiting benzylic regioselectivity in rhodium-catalysed hydroformylation

Martin, Nicola — Wed, 22 Jun 2011 00:00:00 GMT

Abstract: This project involves a study into the hydroformylation of substituted alkenes and ways to exploit “benzylic regioselectivity”. It was our aim to develop a clean, selective hydroformylation reaction which takes advantage of the tendency for benzylic regioselectivity in styrene-type molecules; in doing so, providing a potential route to important biologically active molecules. In Chapter Two, hydroformylation of methyl cinnamate is explored since we envisaged that a regioselective hydroformylation of this substrate would serve as a step in an efficient route to γ-amino acids derivatives; which are important building blocks for the synthesis of important drug molecules. Most Rh-phosphine catalysts install the formyl group α- to the ester group however, we found that certain reaction conditions and appropriate choice of phosphorus containing ligands led to highly chemoselective and regioselective hydroformylation. Regioselectivities of up to 25 : 1 favouring the benzylic aldehyde were observed. However, as will be explained, this reaction is hindered by significant hydrogenation under hydroformylation conditions. Using a novel ligand this side reaction was lowered to 5% with reasonable regioselectivity, however overall conversion to the desired aldehyde was low. As a means to synthesise γ-amino acid derivatives, enamine formation using the aldehyde products was also attempted. An alternative alkenyl arene substrate is studied in Chapter Three. High benzylic regioselectivity was observed using a variety of chiral and achiral ligands and again reaction conditions were optimised with the aim to develop an efficient process for the synthesis of γ-amino alcohol derivatives. It was found that PPh₃, tris(3,4,5-trifluorophenyl)phosphine and a phosphaadamantane cage phosphine ligand gave the most promising results with moderate to high regioselectivity observed. Asymmetric hydroformylation was not possible due to low activity using a variety of state-of-the-art chiral ligands.

Novel metal organic frameworks : synthesis, characterisation and functions

Haja Mohideen, Mohamed Infas — Fri, 20 May 2011 00:00:00 GMT

Abstract: The synthesis and properties of novel Metal Organic Frameworks were investigated and reported in this thesis. Thirteen new materials have been synthesized and their properties have been discussed with nine of the structures being solved. The most interesting and useful MOF among the thirteen materials is STAM-1, a copper-based Metal Organic Framework in which the starting linker (Benzene-1,3,5-tricarboxylic acid) undergoes selective in situ monoesterification during the synthesis. The monoesterified BTC can be recovered easily from the MOF, opening up MOF synthesis as a “protection” tool for unexpected selectivity in preparative chemistry that is difficult to accomplish using standard organic chemistry approaches. The selective linker derivatisation leads to the formation of a porous MOF with two types of accessible channel; one hydrophilic lined by copper and the other hydrophobic, lined by the ester groups. The unique structure of the pores leads to unprecedented adsorption behaviour, which reacts differently to gases or vapours of dissimilar chemistry and allows them to access different parts of the structure. The structural flexibility of STAM-1 shows significant differences in the kinetics of O₂ and N₂ adsorption, showing potential for new materials to be developed for air separation. Having two types of channel systems, adsorption can be switched between the two channels by judicious choice of the conditions; a thermal trigger to open the hydrophilic channel and a chemical trigger to open the hydrophobic channel. The storage and release capability of NO in STAM-1 was investigated for use in biomedical applications. Successful studies showed the strength of the antibacterial effects of NO loaded STAM-1, by using three different bacterial strains as a test of performance and were found to be bactericidal. Furthermore the antibacterial effects of NO free STAM-1 were also probed and found to be bactericidal even with low concentrations of the material such as 5 wt%. STAM-1 showed some complex magnetic behaviour by displaying strong antiferromagnetic properties at room temperature and ferromagnetic properties at lower temperatures. The antiferromagnetic coupling was observed within the dimer and ferromagnetic coupling between the dimers. This property of ferromagnetism can only be attributed to the corporation of magnetic dimers in the framework. STAM-2 displays a different magnetic behaviour than STAM-1 which shows paramagnetic properties at room temperature and antiferromagnetic properties at lower temperatures. Other novel MOFs were also successfully characterised and their properties were investigated for potential applications.

Stereospecific dehydroxyfluorination and the synthesis of trifluoro D-hexose sugar analogues

Bresciani, Stefano — Wed, 22 Jun 2011 00:00:00 GMT

Abstract: This thesis describes stereospecific fluorination reactions, and addresses the synthesis of fluorosugars. In Chapter 1, the influence of fluorine on the physical properties of organic molecules, as well as its stereoelectronic effects, are introduced. Furthermore, an overview of nucleophilic and electrophilic fluorination reactions is given. Chapter 2 describes the dehydroxyfluorination of allylic alcohol diastereoisomers 155a and 155b, which can proceed either by direct or allylic fluorination. The regio- and stereo- selectivities were also assessed. Chapter 3 outlines the synthesis of the novel trifluoro D-glucose analogue 193 and trifluoro D-altrose analogue 216. The transport of these hexose analogues across the red blood cell membranes was then explored, to investigate the influence of polarity versus hydrogen bonding ability in carbohydrate-protein interactions. Chapter 4 describes the development and optimisation of Bio’s methodology, to promote stereospecific dehydroxyfluorination of benzylic alcohols (R)-213 and (R)-227 by addition of TMS-amine additives 226 and 229. And finally Chapter 5 reports the experimental procedures as well as the characterisation and the crystallographic data of the molecules prepared in this thesis.

Continuous flow homogeneous hydroformylation of 1-octene over supported ionic liquid phase rhodium catalysts using supercritical CO₂

Gong, Zhenxin — Sat, 01 Jan 2011 00:00:00 GMT

Abstract: The hydroformylation of 1-octene with supported ionic liquid phase catalyst was demonstrated when using a system involving the substrate, reacting gases and products in CO₂ and N₂ flow over a fixed bed supported ionic liquid phase catalyst (silica gel and carbon aerogels as solid support respectively) at different system pressures. Yields, reaction rates, selectivities and rhodium leaching were all monitored. A pressure of CO₂ flow just below the critical point of the flowing mixture (106 bar at 100 °C if no 1-octene has been converted) was the best condition for the hydroformylation. It gave the highest acitivity (conversion to aldehyde up to 70 %), fastest reaction (TOF up to 575.3 h⁻¹) and best stable selectivity ( l:b ratio reaching 3.37 ). The utilization of scCO₂ as reaction media leads to remarkable stability of the catalyst. The supercritical or near critical (expanded liquid) system completely overcame the progressive decrease in activity of catalyst at 50, 75 bar with liquid phase transport and also showed much better results than when using other gas flows such as N₂ flow at 100 bar. In the high pressure scCO₂ phase, the concentration of 1-octene at the catalyst bed was reduced so that the conversion to aldehyde was reduced. The pore size and surface groups of the solid support should be suitable for the SILP catalyst consisting of metal complex, excess ligand and ionic liquid. Using microporous carbon aerogels as the supports, whether activated or not, gave disappointing results.

Cu/Ce[subscript(x)]Zr[subscript(1-x)]O₂ catalysts for solid oxide fuel cell anodes

Kearney, Jonathan — Tue, 01 Jun 2010 00:00:00 GMT

Abstract: Ce[subscript(x)]Zr[subscript(1-x)]O₂ mixed oxides of varying compositions were prepared by a sol-gel citrate complexion technique. In order to improve the catalytic activity of the oxides they were impregnated with copper using two different impregnation techniques. The bare oxides and copper impregnated samples were investigated using a range of Temperature Programmed (TP) techniques, in an attempt to establish their effectiveness as anode materials for solid oxide fuel cells (SOFCs) run on hydrocarbon fuels. In order to conduct the TP experiments a novel system was designed and constructed. The high Ce containing mixed oxides were shown to be reduced at lower temperature than high Zr content samples. TPRx experiments were employed to investigate which of the oxides was most prone to carbon deposition when reacted in methane, with the high ceria sample displaying the lowest level of carbon deposition. Lightoff experiments were undertaken to establish which oxide composition was the most active for methane oxidation. The activity of the oxides increased with ceria content up to 75 mole% (ZCe75), before decreasing for ZCe90. All the mixed oxides were shown to be more active for methane oxidation than CeO₂.

Novel cambinol analogues as potential anticancer agents : an improved understanding of sirtuin isoform selectivity

Medda, Federico — Wed, 22 Jun 2011 00:00:00 GMT

Abstract: SIRT1 and SIRT2 are two NAD⁺-dependent deacetylases which negatively modulate the activity of p53, a protein which is involved in cell cycle arrest, senescence and apoptosis following genotoxic stress. Part I of the thesis describes the exploration of the chemical space around a reported unselective and modest inhibitor of SIRT1 and SIRT2 with the aim of improving the selectivity and potency of the inhibitor against the two isoforms. Particular emphasis is placed upon understanding the mode of binding of the novel analogues within the active site of the enzymes. Chapter 1 reviews the physiological roles of class III NAD⁺-dependent deacetylases, also known as sirtuins. In particular, the application of SIRT1 and SIRT2 inhibitors as potential anticancer agents is described. Amongst these, only cambinol and the tenovins showed in vivo activity in a mouse xenograft model. Previously only one analogue of cambinol had been reported in the literature. Chapter 2 describes the development of a small collection of novel cambinol analogues (First Generation Studies). The role played by different substituents at the phenyl group and at the N-1 of the thiouracil core is discussed. Along with the synthesis and structure activity relationship (SAR) associated with the core structure, in-cell experiments intended to confirm the activity of the most active compounds are reported. Chapter 3 provides a rationalisation for the SAR discussed in Chapter 2. Based on computational molecular modelling studies (GOLD), the activity of the most potent and selective SIRT2 inhibitors is explained. Two series of novel cambinol analogues were designed (Second and Third Generation Analogues) in order to assess further the proposed binding mode. Chapter 4 focuses on the development of the “Second Generation” analogues, characterised by the presence of lipophilic substituents at the sulfur atom and at the N-3 position of the thiouracil core. The synthesis, biological evaluation and SAR are discussed in detail. Chapter 5 reports the development of the “Third Generation” analogues, characterised by either a benzyl group or para-alkoxy-substituted benzyl group at the N-1 position of cambinol. Once again, the synthesis, biological evaluation and SAR data are presented. An improved understanding of the mode of binding of the novel compounds is proposed based on molecular dynamics (MD) studies. Indole-based alkaloids, such as Vincristine and Vinblastine, are well known for their anticancer activity. Recently, the anticancer activity of members of the calycanthaceous family of alkaloids has been discovered. Part II of the thesis focuses on model studies aimed at developing the total synthesis of one of these compounds, perophoramidine. Chapter 7 provides an overview of the calycanthaceous alkaloid family of natural products, including their biological properties. The structural features of perophoramidine, along with the previously reported synthetic studies are outlined. Chapter 8 describes the synthesis of an advanced intermediate in the total synthesis of dehaloperophoramidine, a structural analogue of perophoramidine Problems encountered, optimisation studies and the synthesis of a re-designed intermediate are also reported in this chapter.

A complementary study of perovskites : combining diffraction, solid-state NMR and first principles DFT calculations

Johnston, Karen Elizabeth — Fri, 01 Jan 2010 00:00:00 GMT

Abstract: Perovskites, ABX₃, and their associated solid-solutions are a particularly important and attractive area of research within materials chemistry. Owing to their structural and compositional flexibility and potential physical properties they are one of the largest classes of materials currently under investigation. This thesis is concerned with the synthesis and structural characterisation of several perovskite-based materials using a combined approach of high-resolution synchrotron X-ray and neutron powder diffraction (NPD), solid-state Nuclear Magnetic Resonance (NMR) and first-principles Density Functional Theory (DFT) calculations. Initial investigations concentrated on room temperature NaNbO₃, a perovskite widely debated in the literatue. Published crystallographic data indicate NaNbO₃ possesses two crystallographically distinct Na sites in space group Pbcm. Whilst some of our materials appear in agreement with this (notably a commercially purchased sample) many of our laboratory-synthesised samples of NaNbO₃ routinely comprise of two phases, which we show to be the antiferroelectric Pbcm and polar P2₁ma polymorphs. Several different synthetic methods were utilised during this investigation and the quantity of each phase present was found to vary as a function of preparative method. ²³Na, ⁹³Nb and ¹⁷O DFT calculations were used in conjunction with experiment to aid in spectral analysis, assignment and interpretation. In addition, ab initio random structure searching (AIRSS) was utilised in an attempt to predict the most stable phases of NaNbO₃. This proved to be both successful and highly informative. A series of NaNbO₃-related solid-solutions, namely K[subscript(x)]Na[subscript(1-x)]NbO₃ (KNN), Li[subscript(x)]Na[subscript(1-x)]NbO₃ (LNN) and Na[subscript(1-x)]Sr[subscript(x/2)]□[subscript(x/2)]NbO₃ (SNN) have also been synthesised and characterised. The substitution of K⁺ , Li⁺ and Sr²⁺ cations onto the A site appears to produce the same polar P2₁ma phase initially identified in the room temperature NaNbO₃ investigation. The abrupt change in cation size in the KNN and LNN series, and the introduction of vacancies in the SNN series, is thought to result in a structural distortion which, in turn, causes the formation of the P2₁ma phase. A low temperature synchrotron X-ray powder diffraction study (12 < T < 295 K) was completed for a sample of NaNbO₁ composed of the P2₁ma polymorph (~90%) and a small quantity of the Pbcm phase (~10%). A region of phase coexistence was identified between the P2₁ma, R3c and Pbcm phases over a relatively large temperature range. Full conversion of the P2₁ma phase to the low temperature R3c phase was not possible and, consistently, the P2₁ma phase was the most abundant phase present. Factors such as structural, strain, crystallite size and morphology are thought to be crucial in determining the exact phases of NaNbO₃ produced, both at low and room temperature. The solid-solution La[subscript(1-x)]Y[subscript(x)]ScO₃ was also investigated. Compositions x = 0, 0.2, 0.4, 0.6, 0.8 and 1 were successfully synthesised and characterised. Refined high-resolution NPD data indicates that an orthorhombic structure, in space group Pbnm, was retained throughout the solid-solution. Using ⁴⁵Sc and ⁸⁹Y MAS NMR each sample was found to exhibit disorder, believed to result from both a distribution of quadrupole and chemical shifts. NMR parameters were calculated for several model Sc and Y compounds using DFT methods to determine the feasibility and accuracy of ⁴⁵Sc and ⁸⁹Y DFT calculations. These proved successful and subsequent calculations were completed for the end members LaScO₃ and YScO₃. DFT calculations were also utilised to gain insight into the disorder exhibited in the La[subscript(1-x)]Y[subscript(x)]ScO₃ solid-solution.

Development of artificial metalloenzymes via covalent modification of proteins

Popa, Gina — Fri, 01 Jan 2010 00:00:00 GMT

Abstract: Development of selective artificial metalloenzymes by combining the biological concepts for selective recognition with those of transition metal catalysis has received much attention during the last decade. Targeting covalent incorporation of organometallic catalysts into proteins, we explored site-selective covalent coupling of phosphane and N–containing ligands. The successful approach for incorporation of phosphane ligands we report herein consists of site-specific covalent coupling of a maleimide functionalized hydrazide into proteins, followed by coupling of aldehyde functionalized phosphanes via a hydrazone linkage. Site selective incorporation of N–containing ligands was obtained by coupling maleimide functionalized N–ligands to proteins via Michael addition to the maleimide double bond. These two methods can be easily applied to virtually any protein displaying a single reactive cysteine and allows a wide range of possibilities in terms of cofactor design. Site-specific covalent incorporation of transition metal complexes of phosphane ligands into proteins was successfully obtained. The success of the approach is influenced by several factors like the metal precursor, the phosphane type and the protein scaffold. Metal complexes of 5–maleimido–1,10–phenanthroline modified proteins were formed in situ, via addition of a metal precursor to the phenanthroline modified proteins or by coupling preformed metal complexes to proteins via Michael addition of the thiol group from a cysteine residue to the maleimide double bond of the N-ligand. These successful coupling methods enable the use of a wide range of protein structures as templates for the preparation of artificial transition metalloenzymes, which opens the way to full exploration of the power of selective molecular recognition of proteins in transition metal catalysis.

Adsorption of adenine and phenylglycine on Cu(110) surfaces studied using STM and RAIRS

Cheng, Lanxia — Fri, 19 Nov 2010 00:00:00 GMT

Abstract: The adsorption of biologically active molecules, such as the DNA bases, amino acids, on solid surfaces has been the subject of a number of experimental and theoretical studies in the past years. The understanding of the self-assembly mechanism of bioactive molecules on surfaces not only is fundamentally important in the preparation of bioactive surfaces, but also provides us insight into the origins of life and homo-chirality in nature. In this thesis, the adsorption behaviour of adenine and phenylglycine molecules on the Cu(110) surface has been investigated in order to understand the effect of experimental parameters like coverage, annealing temperature etc. on the molecular orientation and the ordering of the adlayer structures. The thesis is organised in six parts: Chapter I gives an introduction to the relevance of surface sciences studies, describing the phenomena of surface chirality and molecular adsorption behaviours on surfaces. Chapter II gives an overview of the experimental techniques and introduces basic concepts of theoretical calculation. Chapter III investigates the effect of experimental parameters, e.g. surface coverage, annealing temperature and substrate temperature on molecular diffusion, molecular orientation and ordering of the adlayer structures. LT-STM examination of the contrast variations of adenine chains and isolated adsorbate as a function of the tip-sample bias voltage is also presented with the aim to understand the tunnelling mechanism. Chapter IV shows RAIR spectra studies of the evolution of phenylglycine molecular orientation as a function of surface coverage at room temperature. The adsorption geometry and binding nature of phenylglycine is discussed. Chapter V concerns with the adsorption behaviours of phenylglycine and adenine on Cu(110) surface pre-covered with oxygen. Chapter VI summarises the conclusions and describes the outlook of some future work.

Synthesis and characterisation of materials for photoelectrochemical applications

Randorn, Chamnan — Fri, 01 Jan 2010 00:00:00 GMT

Abstract: The preparation of visible light driven photocatalysts for photocatalytic water splitting has been achieved by a CO₂ free, low cost and simple novel method. Combination of peroxide based route with organic free solvent and titanium nitride, carbon free precursor and air and moisture stable, would be useful. Clear red-brown solution of titanium peroxo species was obtained by dissolution of TiN in H₂O₂ and HNO₃ acid at room temperature without stirring. The resultant red brown solution is then used as a titanium solution precursor for yellow amorphous and yellow crystalline TiO₂ synthesis. Visible light photoactivity of the samples was evaluated by photooxidation of methylene blue and photoreduction producing hydrogen from water splitting. The high surface area of yellow amorphous TiO₂ exhibits an interesting property of being both surface adsorbent and photoactive under visible light for photodecolourisation of aqueous solution of methylene blue. However, it might not appropriate for hydrogen production. Nanoparticulate yellow crystalline TiO₂ with defect disorder of Ti³⁺ and oxygen vacancies depending upon synthesis conditions has been characterised by ESR, XPS, CHN analysis and SQUID. Single phase rutile can be produced at low temperature. It is stable at high temperature and the red shift of absorption edge increases with the treatment temperature. Yellow crystalline TiO₂ exhibits an interesting property of being photoactive under visible light. The best photocatalytic performance was observed for 600°C calcination, probably reflecting a compromise between red shift and surface area with changing temperature. Moreover, overall water splitting into hydrogen and oxygen might be obtained by using this material even in air atmosphere. Photoactivity can be improved by testing under anaerobic atmosphere and/or adding sacrificial agent. Quantum efficiency under visible light is still low but comparable to other reports. The maximum efficiency varies from 0.03 % to 0.37 % for hydrogen production and from 0.03 % to 0.12 % for oxygen production, depending on photon energy and sacrificial agents.

Applications of ordered mesoporous metal oxides : energy storage, adsorption, and catalysis

Ren, Yu — Tue, 30 Nov 2010 00:00:00 GMT

Abstract: The experimental data and results demonstrated here illustrate the preparation and application of mesoporous metal oxides in energy storage, adsorption, and catalysis. First, a new method of controlling the pore size and wall thickness of mesoporous silica was developed by controlling the calcination temperature. A series of such silica were used as hard templates to prepare the mesoporous metal oxide Co₃O₄. Using other methods, such as varying the silica template hydrothermal treatment temperature, using colloid silica, varying the materials ratio etc., a series of mesoporous β-MnO₂ with different pore size and wall thickness were prepared. By using these materials it has been possible to explore the influence of pore size and wall thickness on the rate of lithium intercalation into mesoporous electrode. There is intense interest in lithium intercalation into titanates due to their potential advantages (safety, rate) replacing graphite for new generation Li-ion battery. After the preparation of an ordered 3D mesoporous anatase the lithium intercalation as anode material has been investigated. To the best of our knowledge, there are no reports of ordered crystalline mesoporous metal oxides with microporous walls. Here, for the first time, the preparation and characterization of three dimensional ordered crystalline mesoporous α-MnO₂ with microporous wall was described, in which K+ and KIT-6 mesoporous silica act to template the micropores and mesopores, respectively. It was used as a cathode material for Li-ion battery. Its adsorption behavior and magnetic property was also surveyed. Following this we described the preparation and characterization of mesoporous CuO and reduced Cu[subscript(x)]O, and demonstrated their application in NO adsorption and delivery. Finally a series of crystalline mesoporous metal oxides were prepared and evaluated as catalysts for the CO oxidation.

Nuclear magnetic resonance spectroscopy and computational methods for the characterization of materials in solution and the solid state

Carnevale, Diego — Fri, 01 Jan 2010 00:00:00 GMT

Abstract: Nuclear Magnetic Resonance (NMR) and computational methods increasingly play a predominant and indispensable role in modern chemical research. The insights into the local nuclear environment that NMR can provide is unique information which allows the structural characterization of novel materials, as well as the understanding and explanation of their relevant properties on an atomic scale. Computational methods, on the other hand, can be used to support experimental findings, providing a rigorous theoretical basis. Furthermore, when more complex chemical systems are considered, calculations can prove to be invaluable for the interpretation of experimental data and often allow an otherwise impossible spectral assignment. This thesis presents a series of studies in which NMR spectroscopy, in combination with computational methods, is utilized to investigate a variety of chemical systems both in solution and the solid state. An overview of the thesis and experimental and computational details are given in Chapter 1. In Chapter 2, the quantum mechanical basis necessary for the description of the NMR phenomenon is presented. Chapter 3 explores the main experimental techniques employed routinely for the acquisition of NMR spectra in both solution and the solid state. Chapter 4 describes the main features of density functional theory (DFT) and its implementation in computational methods for the calculation of relevant NMR parameters. Chapter 5 reports an experimental solution-phase NMR study and a parallel computational investigation of the poly(CTFE-co-EVE) fluoropolymer. In Chapter 6, the combination of [superscript(14/15)]N solution-phase NMR techniques and DFT methods for the study of alkylammonium cationic templates used in the synthesis of microporous materials is presented. The characterization of a boroxoaromatic compound in the solid state and the study of its reactivity are described in Chapter 7. In Chapter 8, two experimental NMR methods for the study of the anisotropic chemical shift interaction in the solid state are compared and used to characterize a range of materials. Cross-polarization and nutation of quadrupolar nuclei are computationally investigated under both static and spinning conditions in Chapter 9. A general conclusion and a summary are given in Chapter 10.

Novel electrocatalytic membrane for ammonia synthesis

Klinsrisuk, Sujitra — Fri, 01 Jan 2010 00:00:00 GMT

Abstract: Novel ceramic membrane cells of BaCe₀.₅Zr₀.₃Y₀.₁₆Zn₀.₀₄O[subscript(3-δ)] (BCZYZ), a proton-conducting oxide, have been developed for electrocatalytic ammonia synthesis. Unlike the industrial Haber-Bosch process, in this work an attempt to synthesise ammonia at atmospheric pressure has been made. The membrane cell fabricated by tape casting and solution impregnation comprises of a 200 μm-thick BCZYZ electrolyte and impregnated electrode composites. Electrocatalysts for anode and cathode were investigated. For the anode, the co-impregnation of Ni and CeO₂ provided excellent electrode performance including high catalytic activity, sintering stability and compatibility with the BCZYZ electrolyte. The best composition was the mixture of 25 wt% NiO and 10 wt% CeO₂. A symmetrical cell prepared with this electrode composition revealed low polarisation resistances of 1.0 and 0.45 Ωcm² in humidified 5% H₂/Ar at 400 and 500 °C, respectively. For the cathode, 25 wt% of impregnated Fe oxide provided a satisfactory performance in non-humidified N₂ atmosphere. Significant amounts of ammonia were produced from the single cell with Ni-CeO₂ anode and Fe oxide cathode at 400-500 °C under atmospheric pressure. Ammonia formation rate was enhanced by Pd catalyst addition and electrochemical performance was improved by Ru addition. The highest ammonia formation rate of 4 x 10⁻⁹ mols⁻¹cm⁻² was attained using the cell with a Pd-modified Fe cathode at 450 °C. The formation reaction of ammonia typically consumed around 1-2.5 % of total applied current while most of the applied current was employed in H⁺ reduction. The total current efficiency of around 90-100 % could be obtained from the membrane cells. Description: Electronic version does not contain associated previously published material

Studies in cyclic ether synthesis: Part one: Domino cyclisations to cyclic ethers -- Part two: Synthetic studies towards neopeltolide

Cadou, Romain F. — Mon, 01 Nov 2010 00:00:00 GMT

Abstract: Tetrahydrofuran (THF) and tetrahydropyran (THP) rings are commonly found in a wide range of natural products and biologically active compounds. In total synthesis, the formation of THF/THP motifs is often the key step but existing methods often involve numerous steps and low overall efficiencies. Part one of this thesis details the development of a practical method for the synthesis of THF rings by the controlled mono-addition/cyclisation of organolithium species to C2-symmetric diepoxides (Scheme A-1). This method can also be applied to the synthesis of bis-THF rings from triepoxides and has potential applications in more complex cascade reactions. A similar cyclisation process providing THF rings from epoxyaldehydes is also described.Part two of this thesis details our efforts towards the synthesis of the marine macrolide neopeltolide. Wright and co-workers reported the isolation of neopeltolide 211 from a deep-water sponge of the family neopeltidae off the north coast of Jamaica. The structure, which was assigned by NMR and HRMS studies and reassigned by total synthesis, contains a 14-membered macrolactone, a 2,6-cis THP ring and an unsaturated oxazole side-chain. Chapter four describes the synthesis of the C2-C8 and C9-C16 fragments (Scheme A-2). Chapter five details our initial attempts in the coupling of subunits 268 and 320, as well as a revised synthetic strategy that allowed us to successfully couple C2-C9 alkyne 347 with C10-C16 aldehyde 348 and the preparation of an advanced intermediate 364 (Scheme A-3).

Synthesis and characterisation of ordered mesoporous materials

Dougherty, Troy Allen — Wed, 23 Jun 2010 00:00:00 GMT

Abstract: Ordered mesoporous materials have attracted much attention recently for use in a wide range of applications. The oxidising materials, ceria (CeO₂) and CGO (Ce₀.₉Gd₀.₁O[subscript(2-δ)]) have both been synthesised with ordered mesopores, but a method for the simple fabrication of these materials in high yields with crystalline pore walls has not yet been reported in the literature. This thesis details the development of the vacuum impregnation method for the synthesis of ordered mesoporous materials with emphasis on ceria and CGO. Using the vacuum impregnation method both materials were successfully prepared. The materials exhibited the porous single crystal morphology in high yields, with unusual crystallographic features. Nitrogen physisorption, transmission electron microscopy (TEM), TEM tomography and temperature programmed studies were employed. Temperature programmed studies showed the materials to be catalytically active at lower temperatures than traditionally-prepared ceria. Photovoltaic studies showed that the materials exhibited efficient exciton quenching. The observation of nanowire extrusion during the synthetic procedure assisted in the postulation of a mechanism for product formation in the vacuum impregnation method. The vacuum impregnation method was subsequently shown to be applicable to the synthesis of other materials, with encouraging results presented for ordered mesoporous carbon and Zr₀.₈₄Y₀.₁₆O[subscript(2-δ)]. The syntheses of ordered mesoporous La₀.₈₅Sr₀.₁₅GaO[subscript(3-δ)] and La₀.₇₆Sr₀.₁₉CoO[subscript(3-δ)] were unsuccessful.

Pd catalysed C-C & C-O bond formation using bis-(dialkyl/diarylphosphino)ferrocene ligands

Milton, Edward J. — Wed, 23 Jun 2010 00:00:00 GMT

Abstract: A brief introduction explaining phosphine ligand properties, Pd catalysed cross-coupling reactions; the importance of the steps involved in the catalytic cycle (oxidative addition, transmetalation & reductive elimination), mechanistic studies and a comparison of various reactions will give an overview of important cross-coupling reactions and their limitations.The development of a “super-concentrated” (5M) Pd catalysed Kumada type coupling reaction has been developed for coupling a range of aryl bromide and chloride substrates with the Grignard reagents ((p-CF₃-C₆H₄)MgBr)) and PhMgBr in methyl-tetrahydrofuran (Me-THF). Using a range of bidentate ligands such as bis-phosphinoferrocenyl ligands, good conversions were achieved using small amounts of solvent; up to 10 times less than typical procedures in THF. The unsymmetrical Pt complexes of the form [Pt(P-P)Br₂], [Pt(P-P)(Ph)Br] and [Pt(P-P)Ph₂] have been synthesised and characterised. The variations of substituents on the ligand system and the steric bulk have been shown to have a dramatic effect on the rate of transmetalation. The results provide one explanation why 1,1’-bis(di tert-butylphosphino)ferrocene (dtbpf), an excellent ligand for certain Suzuki reactions, is quite poor in reactions where transmetalation is more difficult. Palladium dichloride complexes of the ferrocenylphosphine based ligands 1,1’-bis- (diphenylphosphino)ferrocene (dppf), 1,1’-bis-(diisopropylphosphino)ferrocene (dippf) and 1,1’-bis-(di-tert-butylphosphino)ferrocene (dtbpf) have been shown to be active in the Hiyama cross-coupling of p-bromoacetophenone and vinyltrimethoxysilane (CHCH₂Si(OMe₃)) in the presence of TBAF under thermal heating and microwave conditions. Ligands with the optimum balance for promoting the transmetalation, oxidative addition and reductive elimination steps along the reaction pathway have been identified. Competition experiments are consistent with slow transmetalation being an issue with the Hiyama reaction relative to the Suzuki coupling.A novel protocol has been developed for the synthesis of aryl-alkyl ethers via C-O bond activation under Pd catalysed conditions. Utilising the unsymmetrical 1-bis-(ditertbutyl-1’- bis-diphenylphosphino)ferrocene (dtbdppf) under optimised conditions with silicon based nucleophiles and NaOH or TBAF as an activator, the formation of methyl, ethyl, n-propyl and n-butyl ethers with a range of aryl halides was achieved in good yield.

Porous anodic metal oxides

Su, Zixue — Fri, 01 Jan 2010 00:00:00 GMT

Abstract: An equifield strength model has been established to elucidate the formation mechanism for the highly ordered alumina pore arrays and titanium oxide nanotubular arrays prepared via a common electrochemical methodology, anodisation. The fundamentals of the equifield strength model was the equilibrium between the electric field driven oxidation rate of the metal and electric field enhanced dissolution rate of oxide. During the anodic oxidation of metal, pore initiation was believed to generate based on dissolution rate difference caused by inhomogeneity near the metal/oxide interface. The ionic nanoconvection driven by the electric force exerted on the space charge layer in the vicinity of electrolyte/oxide interface is established to be the main driving force of the pore ordering at the early stage of the anodisation. While the equifield strength requirement governs the following formation of the single pore and the self-ordering of random distributed pore arrays during the anodisation process. Hexagonal patterned Al2O3 nanopore arrays and TiO2 nanotubular arrays have been achieved by anodisation of corresponding metal substrates in proper electrolytes. The two characteristic microstructural features of anodic aluminium oxide (AAO) and anodic titanium oxide (ATO) were investigated using scanning electron microscopy (SEM) and high resolution transmission electron microscopy (HRTEM). The observations of the hemispherical electrolyte/oxide and oxide/metal interfaces, uniform thickness of the oxide layer, as well as self-adjustment of the pore size and pore ordering can be well explained by the equifield strength model. Field enhanced dissociation of water is extremely important in determination of the porosity of anodic metal oxide. The porosity of AAO and ATO films was found to be governed by the relative dissociation rate of water which is dependent on anodisation conditions, such as electrolyte, applied voltage, current density and electric field strength. Using an empirical method, the relations between the porosity of the AAO (ATO) films and the anodisation parameters, such as electric field strength, current density and applied voltage, have been established. Besides, the extent that an external electric field can facilitate the heterolytic dissociation of water molecule has been estimated using quantum-chemical model computations combined with the experimental aspect. With these achievements, the fabrication of anodic metal oxide films can be understood and controlled more precisely. Additionally, the impacts of other factors such as the electrolyte type and the temperature effect on the morphology of the anodic products were also investigated. Some important experimental evidences on the pore diameters variation with applied voltage in the anodisation of aluminium and the titanium were obtained for future investigation of the anodic metal oxide formation processes.

Probing the influence of bimetallic composition on the Pd/Au catalysed synthesis of vinyl acetate monomer

Haire, Andrew Richard — Tue, 01 Jun 2010 00:00:00 GMT

Abstract: Scanning Tunnelling Microscopy (STM) was utilised together with the high resolution depth-profiling capabilities of Medium Energy Ion Scattering (MEIS), a technique traditionally associated with single crystal substrates, to probe the mean size and depth dependent composition profile of bimetallic PdAu nanoparticles on planar oxide surfaces as functions of the starting composition and annealing temperature. In order to fit composition profiles to experimental MEIS data, a new analysis tool has been designed that models the particles as flat-topped structures with a hexagonal base which can be divided into a number of shells, each shell corresponding to a particular ion pathlength inside the material. The reliability of this method will be discussed in detail. Fitting results show that the surface layers are always significantly enriched in Au compared to the bulk alloy composition. By comparing MEIS data for clean surfaces data for modified surfaces it was found that Pd generally segregates towards the particle surface on adsorption of acetic acid. The interaction of potassium acetate with Au/Pd{111} alloy surfaces of varying composition has been investigated using Temperature Programmed Desorption (TPD) and Reflection Absorption Infra Red Spectroscopy (RAIRS). At lower coverage, potassium acetate reacts reversibly with the surface to form CO and carbonate. Formation of surface acetate is observed on Pd-rich surfaces only. At higher coverage, acetate is the major surface species formed on all samples examined.

Adenylate forming enzymes involved in NRPS-independent siderophore biosynthesis

Schmelz, Stefan — Wed, 23 Jun 2010 00:00:00 GMT

Abstract: Activation of otherwise unreactive substrates is a common strategy in chemistry and in nature. Adenylate-forming enzymes use adenosine monophosphate to activate the hydroxyl of their carboxylic substrate, creating a better leaving group. In a second step this reactive group is replaced in a nucleophilic elimination reaction to form esters, amides or thioesters. Recent studies have revealed that NRPS- independent siderophore (NIS) synthetases are also adenylate-forming enzymes, but are not included in the current superfamily description. NIS enzymes are involved in biosynthesis of high-affinity iron chelators which are used for iron acquisition by many pathogenic microorganisms. This is an important area of study, not only for potential therapeutic intervention, but also to illuminate new enzyme chemistries. Here the structural and biochemical studies of AcsD from Pectobacterium chrysanthemi are reported. AcsD is a NIS synthetase involved in achromobactin biosynthesis. The co-complex structures of ATP and citrate provide a mechanism for the stereospecific formation of an enzyme-bound citryl-adenylate. This intermediate reacts with L-serine to form a likely achromobactin precursor. A detailed characterization of AcsD nucleophile profile showed that it can not only catalyze ester formation, but also amide and possibly thioester formation, creating new stereospecific citric acid derivatives. The structure of a N-citryl-ethylenediamine product co-complex identifies the residues that are important for both recognition of L-serine and for catalyzing ester formation. The structural studies on the processive enzyme AlcC, which is involved in the final step of alcaligin biosynthesis of Bordetella pertussis, show that it has a similar topology to AcsD. It also shows that ATP is coordinated in a manner similar to that seen in AcsD. Biochemical studies of a substrate analogue establish that AlcC is not only capable of synthesizing substrate dimers and trimers, but also able to assemble the respective dimer and trimer macrocycles. A series of docked binding models have been developed to illustrate the likely substrate coordination and the steps along dimerization and macrocyclization formation. Structural and mechanistic comparison of NIS enzymes with other adenylate-forming enzymes highlights the diversity of the fold, active site architecture, and metal coordination that has evolved. Hence, a new classification scheme for adenylate forming enzymes is proposed.

Modified nucleosides and oligonucleotides as ligands for asymmetric reactions

Nuzzolo, Marzia — Wed, 23 Jun 2010 00:00:00 GMT

Abstract: Development of chiral ligands capable of achieving high selectivity for various asymmetric catalytic reactions has been an important aim of both academia and industry. Nature is capable to selectively catalyze chemical reactions by using enzymes. An ideal catalyst would combine the selectivity of nature and the reactivity of man-made catalysts based on transition metal complexes. The two biomolecules chosen to achieve this are DNA and PNA. DNA is a chiral molecule with high binding selectivity towards small molecules and has been used as ligand for asymmetric catalysis. PNA is an achiral structural analogue of DNA that can form duplexes with DNA. To produce DNA based catalysts it is necessary to introduce a ligand such as a phosphine that will strongly coordinate to transition metals. To achieve this, functionalized linkers need to be introduced into a DNA strand, to covalently couple the phosphine moiety at a specific location of the DNA strand. Amine linkers and several modified nucleosides have been prepared containing thiol and amine functionalities and some of them were successfully introduced into DNA strands to function as linkers for the introduction of phosphine functionalities. Those strands were purified and an adequate procedure was developed for their analysis by MALDI-TOF. Diphenylphosphino carboxylic acids have been coupled to amine modified deoxyuridines by amide bond formation. The same coupling method has been used for oligonucleotides. DNA strands containing phosphine moieties were characterized by MALDI-TOF and ³¹P NMR spectrometry. ³¹P NMR spectroscopy was also used to confirm coordination of a phosphine modified 15-mer to [PdCl(η³-allyl)]₂. The phosphine modified nucleobases were also tested as ligands for palladium catalyzed allylic alkylation and allylic amination with diphenylallyl acetate as substrate although no enantioselectivity was observed. A PNA monomer was also modified with a bidentate sulfur protected phosphine and successfully introduced into a short PNA strand using manual solid phase synthesis. This strand was analyzed by MALDI-TOF. Moreover, preliminary studies were performed to test the use of aptamers as scaffolds for targets containing a ligand functionality.

Structural and functional studies of bacterial outer membrane proteins

Lou, Hubing — Mon, 01 Feb 2010 00:00:00 GMT

Abstract: This thesis studies two particular bacterial outer membrane proteins called OmpC and Wzi, focusing on their expression, purification, crystallization and X-ray structure determination. A series of four naturally occurring OmpC mutants were isolated from a single patient with an E. coli infection of liver cysts. The isolated E. coli strains progressively exhibited increasing breadth of antibiotic resistance in which OmpC was predicted to take a partial role. We carried out an assay in which a strain of E. coli lacking OmpC was used to express the first (antibiotic sensitive) and the last (antibiotic resistant) of the clinical OmpC mutants and drug permeation assessed. Single channel conductance measurements were carried out and the X-ray structures for all the isolates were determined. Protein stability was assessed. With these data we propose that changes in the transverse electric field, not the pore size, underlie the clinically observed resistance to the antibiotics. This is the first demonstration of this strategy for antibiotic resistance. Wzi is a novel outer membrane protein involved in the biosynthesis and translocation mechanism of the K30 antigen from E. coli. The mechanism is a complicated process that requires several proteins including outer and inner membrane proteins. The protein Wzi was expressed, purified and crystallized. Initial crystals were tested and diffracted to 15Å. After optimization, a crystal diffracting to 2.4Å has been obtained.

Studies and application of the enzymes of fluorometabolite biosynthesis in Streptomyces cattleya

Onega, Mayca — Thu, 01 Jan 2009 00:00:00 GMT

Abstract: This thesis focuses on studies investigating the structure of intermediates involved in fluorometabolite biosynthesis, and the potential applications of the fluorinase enzyme in positron emission tomography (PET). Chapter 1 introduces the rare natural occurrence of fluorinated compounds. The bacterium Streptomyces cattleya is known to biosynthesise two fluorinated secondary metabolites: the toxin fluoroacetate (FAc) and the antibiotic 4-fluorothreonine (4-FT). The enzymes and intermediates identified on this fluorometabolite biosynthetic pathway in S. cattleya, prior to this research, are discussed in detail. Chapter 2 presents studies towards the unambiguous structural identification of (3R,4S)-5- deoxy-5-fluoro-D-ribulose-1-phosphate (5-FRulP) as the third fluorinated intermediate on the biosynthetic pathway to fluoroacetate and 4-fluorothreonine in S. cattleya. Chapter 3 describes the synthetic routes to key molecules, necessary as reference compounds and substrates, to underpin the subsequent studies in this thesis. In particular, synthetic routes to 5'-deoxy-5'-fluoroadenosine (5'-FDA), 5'-deoxy-5'-fluoroinosine (5'-FDI), 5-deoxy-5-fluoro-D-ribose (5-FDR) and 5-deoxy-5-fluoro-D-xylose (5-FDX) are described. Chapter 4 describes the use of the fluorinase enzyme from S. cattleya as a tool for the synthesis of new [¹⁸F]-labelled sugars with potential application in positron emission tomography (PET). A new route to 5-deoxy-5-[¹⁸F]fluoro-D-ribose ([¹⁸F]FDR) is developed in a two-step enzymatic synthesis. A total of three potential radiotracers ([¹⁸F]FDA, [¹⁸F]FDR and [¹⁸F]FDI) are synthesised using fluorinase-coupled enzyme reactions. In addition, in vitro studies are reported with these [¹⁸F]-labelled sugars to investigate their uptake and potential as PET radiotracers in cancer cells. A preliminary rat imaging study with [¹⁸F]FDA is reported. Chapter 5 details the experimental procedures for the compounds synthesised in this research and the biological procedures for chemo-enzymatic syntheses and protein purification.

Metal-chalcogen-nitrogen ring complexes and crystallographic studies

Waddell, Paul G. — Wed, 23 Jun 2010 00:00:00 GMT

Abstract: A series of Pt(S₂N₂)(P(OR)[subscript n]R′[subscript(3-n)])₂ complexes were prepared and analysed using ³¹P NMR and IR spectroscopy, elemental analysis and X-ray crystallography. Similarly, a series of Pt(SeSN₂)(P(OR)[subscript n]R′[subscript(3-n)])₂ complexes were also prepared and analysed. The ¹J[subscript(Pt-P)] coupling constants and Pt-P bond lengths for these complexes are influenced by the oxygen content of their phosphorus ligands. The ³¹P NMR spectra for a series of [Pt(S3N)(P(OR)[subscript n]R′[subscript(3-n)])₂][BF₄] complexes are also reported. Planar [S₂N₂H]⁻ complexes were prepared and the X-ray crystal structure of [Pd(S₂N₂H)(bipy)][Cl] is reported. The X-ray structures of MX₂(P(OR)[subscript n]R′[subscript(3-n)])₂ are reported and compared with the previously reported analogues. The magnitude of the ¹J[subscript(Pt-P)] varies linearly with the Pt-P bond length (l[subscript(Pt-P)] = 2.421 – J/24255) for the 12 platinum-containing complexes. This correlation is compared to that of a larger series of complexes. A series of M(ndsdsd₂ (ndsdsd = bis[(nitrilo(diphenyl)-λ⁶-sulfanyl)](diphenyl)-λ⁶-sulfanediimide (Ph₂S(=N-(Ph₂)S≡N)₂)) complexes were prepared and characterised using elemental analysis and multinuclear NMR and IR spectroscopy where appropriate. The X-ray crystal structures of five examples are reported.

Target identification and validation studies in chemical biology & Synthesis of medium-sized ring containing compounds via oxidative fragmentation

Liu, Gu — Wed, 23 Jun 2010 00:00:00 GMT

Abstract: Part I of this thesis describes the development of bioactive small molecules of relevance to the study of the apicomlexan parasite Toxoplasma gondii into useful chemical tools. The research includes the target identification and validation studies, using both chemical and biological methods. Chapter 1 provides an overview of chemical genetics with a particular emphasis on methods for the identification of the protein targets of bioactive small molecules. The concept of biochemical protein target identification techniques was introduced with a detailed discussion of interesting applications from the literature. Chapter 2 focuses on the development of a tetrahydro-β-carboline based lead molecule into a chemical tool through target identification studies. The structure activity relationship (SAR) data associated with this core structure, the design of a chemical inducer of dimerisation (CID) and the synthesis of this CID are discussed in detail. Chapter 3 described work done to identify the potential protein target(s) of Conoidin A. Experiments to assess whether Conoidin A can inhibit a proposed target in vitro are also included. Further optimisation of this structural class to develop more potent inhibitors is discussed in the second part of this chapter. Part II of this thesis describes the development of methods for the synthesis of medium-sized ring containing compounds using oxidative fragmentation and rearrangement strategies. Chapter 5 provides an overview of the existing oxidative fragmentation methodology, with an emphasis on the use of oxidative fragmentation reactions for the synthesis of medium-sized ring systems (8-11 ring atoms). Chapter 6 focuses on using the established oxidative fragmentation method in the oxizino carbazolone system to investigate the diasteroselectivity of this reaction. Possible mechanisms for this transformation are investigated and discussed using both chemical and computational methods. An interesting rearrangement reaction has also been observed during this study. Chapter 7 focuses on developing an asymmetric oxidative fragmentation method, for use in the diazabenz[e]aceathrylenes system. Asymmetric oxidative fragmentation reactions using [Ru(pybox)(pydic)] catalysts are discussed. Attempts to optimise the enantiomeric excesses of the reaction by varying reaction conditions and substituents in the substrate are also included.

Continuous flow homogeneous catalysis using ionic liquid/supercritical fluid biphasic systems

Martins, Tânia Isabel Quintas — Fri, 01 Jan 2010 00:00:00 GMT

Abstract: Ionic liquid/scCO₂ biphasic systems have been studied as a possible solution to the main problems concerning homogeneous catalysis reactions such as, the product/catalyst separation, the catalyst retention in the reaction medium and the use of organic solvents. The hydroformylation of long chain alkenes (1-octene) has been carried out as a continuous flow reaction using [OctMIM]Tf₂N (OctMIM = 1-octyl-3-methylimidazolium, Tf = CF₃SO₂) as the reaction solvent and scCO₂as the mobile phase to extract the products. The performance of the rhodium complexes formed with the ionic ligands [PentMIM][TPPTS] (1-pentyl-3- methylimidazolium tri(m-sulfonyl)triphenylphosphine) and [OctMIM][TPPTS] (1-octyl-3- methylimidazolium tri(m-sulfonyl)triphenylphosphine) is described under different sets of experimental conditions. Continuous flow hydroformylation of 1-octene was also carried out using a SILP (Supported Ionic Liquid Phase) catalyst formed with the TPPTS-based ionic ligands named above. The SILP system described in this work has the peculiarity of introducing the “without gases” approach: syn gas was synthesised in situ by the decomposition of formaldehyde. The performance of both systems is compared in the end. The extension of the continuous flow ionic liquid/scCO₂ biphasic system is shown with the optimisation of the silver-catalysed heterocyclisation of furans. A comparison is carried out with a previously developed and optimised continuous flow heterogeneous system.

Cathode development for solid oxide electrolysis cells for high temperature hydrogen production

Yang, Xuedi — Fri, 01 Jan 2010 00:00:00 GMT

Abstract: This study has been mainly focused on high temperature solid oxide electrolysis cells (HT-SOECs) for steam electrolysis. The compositions, microstructures and metal catalysts for SOEC cathodes based on (La₀.₇₅Sr₀.₂₅)₀.₉₅Mn₀.₅Cr₀.₅O₃ (LSCM) have been investigated. Hydrogen production amounts from SOECs with LSCM cathodes have been detected and current-to-hydrogen efficiencies have been calculated. The effect of humidity on electrochemical performances from SOECs with cathodes based on LSCM has also been studied. LSCM has been applied as the main composite in HT-SOEC cathodes in this study. Cells were measured at temperatures up to 920°C with 3%steam/Ar/4%H₂ or 3%steam/Ar supplied to the steam/hydrogen electrode. SOECs with LSCM cathodes presented better stability and electrochemical performances in both atmospheres compared to cells with traditional Ni cermet cathodes. By mixing materials with higher ionic conductivity such as YSZ(Y₂O₃-stabilized ZrO₂ ) and CGO(Ce₀.₉Gd₀.₁O₁.₉₅ ) into LSCM cathodes, the cell performances have been improved due to the enlarged triple phase boundary (TPB). Metal catalysts such as Pd, Fe, Rh, Ni have been impregnated to LSCM/CGO cathodes in order to improve cell performances. Cells were measured at 900°C using 3%steam/Ar/4%H₂ or 3%steam/Ar and AC impedance data and I-V curves were collected. The addition of metal catalysts has successfully improved electrochemical performances from cells with LSCM/CGO cathodes. Improving SOEC microstructures is an alternative to improve cell performances. Cells with thinner electrolytes and/or better electrode microstructures were fabricated using techniques such as cutting, polishing, tape casting, impregnation, co-pressing and screen printing. Thinner electrolytes gave reduced ohmic resistances, while better electrode microstructures were observed to facilitate electrode processes. Hydrogen production amounts under external potentials from SOECs with LSCM/CGO cathodes were detected by gas chromatograph and current-to-hydrogen efficiencies were calculated according to the law of conservation of charge. Current-to-hydrogen efficiencies from these cells at 900°C were up to 80% in 3%steam/Ar and were close to 100% in 3%steam/Ar/4%H₂. The effect of humidity on SOEC performances with LSCM/CGO cathodes has been studied by testing the cell in cathode atmospheres with different steam contents (3%, 10%, 20% and 50% steam). There was no large influence on cell performances when steam content was increased, indicating that steam diffusion to cathode was not the main limiting process.

New gas-phase cascade reactions of stabilising phosphorus ylides leading to ring-fused indoles and quinolines

Murray, Lorna — Fri, 01 Jan 2010 00:00:00 GMT

Abstract: Synthesis and flash vacuum pyrolysis (FVP) of stabilised phosphorus ylides containing an o-amino functionalised benzene ring has been examined for the first time. Model studies using N-methyl-N-tosyl and N-mesyl-N-methyl ylides showed that the ylides could be prepared, although yields were variable, and had the expected spectroscopic properties. Upon FVP, however, the expected loss of Ph₃PO and the sulfonyl group was accompanied by unexpected transfer of the reactive site from nitrogen to carbon giving 3- substituted quinolines rather than the expected indole products. Moving to ylides with an α-cinnamoyl group (or heterocyclic analogue) did, however, result in the originally planned tandem cyclisation leading to ring-fused carbazole products. N-Benzyl was also found to be a suitable thermally labile group and a series of α-cinnamoyl N-benzyl-N-methyl ylides were prepared and characterised. For their synthesis, use of N-cinnamoylbenzotriazoles was found to be preferable to cinnamoyl chloride, requiring only half the amount of amino-functionalised phosphonium salt. While FVP of some of these ylides led to benzo-, furo- and thienocarbazoles in good yield, others again gave quinoline-type products pointing to a fine balance between the two alternative modes of cyclisation. It was noted that one of the furocarbazole products was very similar to a natural product, Eustifoline D, isolated from the medicinally active shrub Murraya euchrestifolia from Taiwan and its synthesis was planned. With a view to producing the required N-H carbazole, N,N-dibenzylamino amino ylides were prepared and were found to exhibit restricted rotation leading to broad NMR signals. Their FVP again led to both quinoline and carbazole products, with the former having usually, but not always, lost a phenyl group. Mechanistic pathways for the formation of the various products are proposed. Complete assignment of the complex ¹H NMR spectra of the various fused-ring heterocyclic products was achieved, assisted by simulations in many cases. The ylide precursor required for Eustifoline D was prepared in five steps and 10% overall yield from 5-methylanthranilic acid. The final FVP step gave a quinoline as the major product, but the minor product was Eustifoline D, spectroscopically identical to the natural product.

The synthesis and biological evaluation of d-myo-inositol 1,4,5-trisphosphate receptor ligands

Keddie, Neil S. — Tue, 01 Jun 2010 00:00:00 GMT

Abstract: The intracellular second messenger InsP₃ is a vital molecule in the regulation of Ca²⁺ signalling. Ca²⁺ mediates a wide range of cellular activities from fertilisation and cell differentiation through to apoptoisis. Using X-ray crystal structure data and molecular modelling, a series of novel InsP₃ analogues were designed as selective InsP₃R-antagonists. Two novel synthetic routes have been developed for the synthesis of these analogues. The first route uses a Ferrier-II rearrangement to provide enantiopure inositol intermediates, whereas, the second route employs a diastereomeric resolution to obtain the enantiopure inositols. The successful synthesis of InsP₃ and a series of 5-position modified analogues are reported herein.

Synthesis and structural studies of group 16 peri-substituted naphthalenes and related compounds

Knight, Fergus Ross — Wed, 23 Jun 2010 00:00:00 GMT

Abstract: Understanding how atoms interact is a fundamental aspect of chemistry, biology and materials science. There have been great advances in the knowledge of covalent and ionic bonding over the past twenty years but one of the major challenges for chemistry is to develop full understanding of weak interatomic/intermolecular forces. This thesis describes fundamental studies that develop the basic understanding of weak interactions between heavier polarisable elements. The chosen methodology is to constrain heavy atoms using a rigid naphthalene backbone. When substituents larger than hydrogen, are positioned at close proximity at the peri-positions of a naphthalene molecule they experience steric strain; the extent of which is dictated by intramolecular interactions. These interactions can be repulsive due to steric hindrance or attractive due to weak or strong bonding. In efforts to understand the factors which influence distortion in sterically crowded naphthalenes and study possible weak intramolecular interactions between peri-atoms, investigations focussed on previously unknown mixed 1,8-disubstituted naphthalene systems. Mixed phosphorus-chalcogenide species were initially studied; three mixed phosphine compounds of the type Nap[ER][PPh2] were prepared along with their chalcogenides and a series of metal complexes. The study of interactions between heavy atoms was progressed by investigations into a series of mixed chalcogenide compounds of the type Nap[EPh][E’Ph] (E = S, Se, Te). Subsequent reaction of the chalcogenide systems with the di-halogens, dibromine and diiodine, afforded a mixture of charge transfer and insertion adducts displaying an array of different geometries around the chalcogen atom. From molecular structural studies, a collection of intramolecular peri-interactions were found, extending from no interaction due to repulsive effects, weak attractive 3c-4e type interactions and one example containing a strong covalent peri-bond. Further weak intramolecular interactions observed include CH-π and E•••E’ type interactions plus π-π stacking between adjacent phenyl rings. It was discovered that the bulk of the peri-atoms is influential on the distance between them, but this is not the only factor determining the naphthalene geometry. Inter- and intramolecular interactions can also have an impact and furthermore the number, size and electronic properties of substituents attached to the peri-atoms can determine molecular distortion.

Novel catalysts for the hydroxymethylation of allyl alcohol : a convenient synthetic route to 1, 4-butanediol

Boogaerts, Ine Ida Françoise — Sun, 01 Nov 2009 00:00:00 GMT

Abstract: Hydroxymethylation catalysis provides a valuable strategy for the high volume production of alcohols from α-alkenes. Generally this involves a hydroformylation-hydrogenation sequence, but the capacity to optimise selectivity for each transformation is limited. Condensation reactions between aldehyde products and alcohol products frustrate process economics. By an alternative scheme, all relevant bond-forming reactions occur in a single mechanism. This thesis describes several approaches to catalyst development and the application of derived systems for the hydroxymethylation of allyl alcohol. A review of auto-tandem hydroxymethylation and domino hydroxymethylation is presented in Chapter 1. In Chapter 2 the synthesis of bis-(diethylphosphine) ligands based on a modular series of chiral alicyclic scaffolds is described. High pressure NMR studies have shown that the catalytically active complex [RhH(CO)₂(L-L)] adopts preferentially ea geometry, with [Rh(CO)(L-L)(μ-CO)]₂ as the primary competing species. Catalyst performance can be correlated with the flexibility of the chelating ring; this favoured a high monomer/dimer ratio which enhances activity, but could not rigidify the configuration of the diethylphosphine groups which inhibits linear selectivity. Deuterium labelling studies were suggestive of a domino hydroxymethylation scheme. From the rhodium-hydroxyalkyl-hydride-carbonyl cation, a reductive elimination furnishes the diol derivatives and a β-hydride abstraction furnishes the hydroxyaldehyde derivatives. Up to 53 mol% selectivity to 1, 4-butanediol was attained. The catalysts could be recycled via biphasic separation, however poisoning by methacrolein caused a decline of activity upon reuse of the solution. An investigation of enhanced specific activity via the meta-effect is the subject of Chapter 3. The effect of systematic meta-substitution in triphenylphosphine upon physicochemical properties was investigated by IR spectroscopy and electrochemistry, both of which showed no significant structural impact on the uncoordinated triarylphosphine. Variable temperature ¹H NMR studies however revealed a change in the solution dynamics of the corresponding Vaska complex. The activation barrier to phosphorus-(ipso)carbon rotation increases as a function of meta-substitution, with rotation of substituted aryl rings past each other being more strained. This should create a well-defined coordination sphere around rhodium, and is proposed to account for the high linear selectivity observed in the hydroformylation of allylic alcohols with [RhH(CO){(3, 5-Me₂Ph)P}₃]. Linear-selectivity reached 96 mol%. Catalyst recycling was executed via biphasic separation, retaining on over twelve cycles an average of ~ 94 % efficiency. The kinetics of allyl alcohol hydroformylation with [RhH(CO){(3, 5-Me₂Ph)P}₃] was found to be well represented by Equation 11 (Section 3.6) A detailed analysis of how substrate-specific the influence of the meta-effect remains to be performed. In Chapter 4 domino hydroxymethylation by multi-component L-L/PEt3/Rh systems is described. The regioselective performance of a diphosphine rhodium catalyst in hydroformylation was translated for hydroxymethylation upon introduction of triethylphosphine at a L-L/PEt3 molar ratio ≥ 1. The highest observed selectivity to 1, 4-butanediol was 66 mol%. Competitive activity of triethylphosphine-modified rhodium species presumably accounts for the reduced linear selectivity observed when L-L/PEt3 molar ratio < 1. Despite aggravated catalyst decomposition at higher triethylphosphine concentrations, heterogeneous hydrogenation does not appear to take place. Deuterium labelling studies also discount a sequential homogeneous hydrogenation. There is evidence for the activation of a tris-phosphine-modified rhodium-acyl-carbonyl complex, but such a species could not be isolated from complexation reactions with a variety of precursors. It would be of interest to determine alternative promotors and to establish whether it is preferential to employ a high concentration of mildly acidic species or a low concentration of highly acidic species. The self-assembly of DNA base pair analogues 2-N-pivaloylaminopyridyl phosphine and isoquinolyl phosphine, each modified with diphenylphosphine, diethylphosphine, dicyclohexylphosphine and bis(3, 5-dimethylphenyl)phosphine, is described in Chapter 5. In the presence of a rhodium precursor, exclusive formation of the heteroleptic complex was observed. Although the intramolecular hydrogen-bonding network is sensitive to temperature and free hydroxyl functionalities, highly regioselective catalysts were generally afforded under the appropriate operating conditions. Only the catalyst based on the bis(dicyclohexylphosphine)-heterodimer performed poorly, presumably due to the formation of mono-phosphine complexes. High chemoselectivity was correlated with the heterodimer acidity constant, however this is rendered non-linear by a trans influence when electronic distinction between the platforms is high. Overall, complexes based on the assembly of a dicyclohexylphosphine platform and a bis(3, 5-dimethylphenyl)phosphine platform were found to be optimal; up to 73 mol% selectivity to 1, 4-butanediol was reached. It has been demonstrated in this thesis that in order to effect linear-selective domino hydroxymethylation of allyl alcohol, two distinct transition state structures must be optimised. High regioselectivity demands an asymmetric rhodium-hydride-dicarbonyl complex, which can be generated by an asymmetric chelate or by rigidifying the configuration of the substituents on phosphorus. Interestingly, chelation geometry in this transition state has little impact on this parameter. It has been shown that domino hydroxymethylation is activated by an electron-rich rhodium-acyl-dicarbonyl. The state of electron density on rhodium can be controlled by the substitution pattern on the phosphorus donors, but can also be changed by the inclusion of a suitable promoter. The chelation geometry in this transition state is more significant; placing the acyl functionality trans to a phosphorus donor concentrates the electronic effect in the rhodium-alkyldiol-hydride-carbonyl cation to such an extent as to impede hydride migration and reductive elimination of the diol, favouring β-hydride abstraction and reductive elimination of the hydroxyaldehyde.

N-hydroxyguanidines and related compounds as nitric oxide donors

Kulczynska, Agnieszka — Thu, 01 Jan 2009 00:00:00 GMT

Abstract: The design of new, improved NO-donor drugs is an important pharmacological objective due to the biological importance of nitric oxide. N-Hydroxyguanidines represent a useful class of NO donors where the mechanism of action is based on the biosynthetic pathway for NO. Thirty new N-arylalkyl-N’-hydroxyguanidines were synthesized and their vasodilatation activity examined by myography in rat aortic rings. The observed relaxations were reversed by ODQ, which is an inhibitor of the guanylate cyclase, implying that this was an NO dependent vasodilatation. The most active compounds were also tested in the isolated perfused kidney (IPK) giving the vasodilatation properties. Preliminary results indicated that N-phenyl-N’- hydroxyguanidine showed the best pharmacological profile with EC₅₀= 19.9 μM and ca. 100% reversibility with ODQ. A series of N-phenylalkyl-N’-hydroxyguanidines were synthesised. NO donor activity was found to be fairly constant up to three methylene groups, and then decreased. Substitutions in the benzene ring of N-phenylethyl-N’-hydroxyguanidine demonstrated that various electron-withdrawing and electron-donating groups in the para position did not significantly affect the NO donor activity of this series of analogues. The nitro and trifluoromethyl substituted compounds gave the best biological profiles. Additionally, a novel heterocyclic, N–furfuryl-N’–hydroxyguanidine possessed very promising vasodilatation properties. In general, almost all the N-arylalkyl-N’-hydroxyguanidines behaved as potent NO donors in the rat aorta assay. In order to establish the influence of the free NH₂ group in the hydroxyguanidine functionality on the vasodilatation properties, N,N-dimethyl and N-methyl-N’- hydroxyguanidines were successfully synthesised. Unfortunately, they have not been tested yet in the biological assay. However, their NMR spectra showed some unusual features and their detailed analysis and X-ray data are presented herein. In addition a series of hydroxamic acids was synthesised and the NO donor activity investigated using the same biological methodology. It was found that the 3-phenylpropionohydroxamic acid was the most potent compound with EC₅₀ = 6 μM and ODQ = 96%. However, behavior in the IPK indicated that hydroxamic acids did not undergo the same biological pathway as in the rat aorta. Two different types of enzyme-activated pro-drugs were designed using N-hydroxyguanidines as the NO donating molecule. Synthetic studies towards these targets were carried out using various synthetic approaches. The desired molecules have not yet been synthesised but the chemistry explored so far has indicated potentially more successful approaches that could be attempted.

The effect of high pressure gasses on heterogeneous catalysts

Mitchell, Robert G. L. — Thu, 01 Jan 2009 00:00:00 GMT

Abstract: Several heterogeneously catalysed reactions have been studied at pressures above and below the critical pressure of carbon dioxide in both carbon dioxide and nitrogen. The purpose of this study was to ascertain if carbon dioxide above its critical pressure and temperature would have a beneficial effect on the active life time of the catalysts When the Beckmann rearrangement of cyclohexanone oxime was studied it was discovered that using carbon dioxide above its critical pressure and temperature was beneficial to catalyst lifetime at both 250°C and 300°C, however the beneficial effect was also observed in nitrogen under the same conditions. It is proposed that the benefits at higher pressures are due to an increased residence time in the reactor or increased competition for active sites. When the process was performed at 380°C, a previously unreported impurity was observed in the collected samples. This was shown to be N-ethyl caprolactam, it is proposed that this is formed by a Ritter style reaction with 5-cyanopent-1-ene known to be formed during the reaction When the Fries rearrangement of phenyl acetate was studied it was discovered that increasing reactor pressure appeared to have little or no effect on the catalyst; it is thought this is because the reaction temperature of 150°C is below the boiling point of phenyl acetate, and that the reaction being observed occurs purely in the liquid phase. When the Diels-Alder addition of isoprene to methyl acrylate was studied, it was discovered that using carbon dioxide above its critical pressure had the effect of improving catalyst lifetime and conversion to desired product, with the greatest effect being at 50 bar. It was discovered that using nitrogen under the same conditions led to a greater improvement in conversion and catalyst lifetime. It is thought that the reactions in carbon dioxide are in a near critical state at 50 bar leading to the maximum effect at this pressure, and at higher pressures the reactions are bi- or multi-phasic, leading to the decrease in the effect. In the process of studying the above reactions an effective rig for the study of high pressure heterogeneously catalysed reactions was built.

Synthesis and characterisation of electronically active species

Mahenthirarajah, Thushitha — Thu, 01 Jan 2009 00:00:00 GMT

Abstract: An exploration of some early transition metal (oxy) fluoride systems using solvothermal techniques has been carried out. 30 novel materials have been synthesised, which fall into three classes based on different metal centres; vanadium (21), molybdenum (5) and niobium (4). Some of these also contain secondary metal centres, namely copper (22) and zinc (1). Simultaneously, the relationship between the SHG values and the crystal structures of the hilgardites family members Pb₂B₅O₉Cl, Pb₂B₅O₉Br, Sr₂B₅O₉Cl and Ba₂B₅O₉Cl was investigated. In particular, the Pb–containing members of the hilgardite family of borate halides exhibit an abnormally large non–linear optical response, which was analysed based on neutron powder diffraction. Using solvothermal synthesis in HF–containing media, 21 novel vanadium oxyfluorides containing interesting structural features, were synthesised at 160˚C using a range of organo-amine compounds as a ligand, template, linker or structure directing agent. The architectures of the crystal structures may be categorised into; four clusters including monomeric vanadium units, five clusters including vanadium dimers, eight 1–D chains, two 2–D layers and two 3–D networks. ‘Composition–space’ diagrams with three components were used to study the effect of stoichiometry changes of reactants and to map out the crystallisation fields. The combination of early (Nb⁵⁺, Mo⁶⁺) and late (Cu²⁺) transition metals with different organo-amines produced nine novel compounds incorporating monomers, chains and 2– D interpenetrated networks. The chains and layers were synthesised from a systematic series of reactions at 160˚C and can be subdivided into four pairs, the topologies of which are essentially unique to each ligand, containing in each case a Cu–based cationic species, but alternately either [MoO₂F₄]²⁻ or [NbOF₅]²⁻, in an isomorphous manner, as the anionic moiety. The overall structures of these materials reflect the influence of the organo–amine ligands. The materials have been studied for their magnetic properties and characterised by thermogravimetric analysis, Rietveld refinement and elemental analysis where relevant.

Studies toward the synthesis and structural elucidation of chamuvarinin

Vanga, Raghava Reddy — Thu, 01 Jan 2009 00:00:00 GMT

Abstract: Chamuvarinin (22) is a unique annoanceaeous acetogenin isolated from the roots of Senegalese medicinal plant Uvaria chamae by Laurens and co-workers in 2004. It displays highly potent cytotoxicity towards the cervical cancer cell lines (KB 3-1, IC₅₀= 0.8 nM). Structurally, chamuvarinin is the first reported acetogenin to contain an adjacently linked bis-THF-THP ring system spanning the C15-C28 carbon backbone. However, initial efforts to assign the relative and absolute configuration within this stereochemical array, on the basis of ¹H and ¹³C NMR analysis, provided only partial information pertaining to the relative configuration of C15-C19 region. As a consequence, 32 diastereomeric structural possibilities exist for the highly unusual structure of chamuvarinin; an unrealistic target for total synthesis. The synthesis of the central core tricyclic (BCD) intermediate represents the most challenging aspect in the entire synthesis, which in turn will aid ultimate structural proof. At the outset of the project the stereochemical configuration of C15-C28 (BCD) of chamuvarinin was uncertain and a library approach was proposed to enable structure elucidation (Scheme A-1). Chapter 2 and Chapter 3 detail the synthesis of possible diastereomers of the C9-C21 (51) and C22-C34 fragments (52). Chapter 4 details the intial strategy to couple the key diastereomeric fragments in a series of model studies. Chapter 5 describes the successful coupling strategy via an revised synthetic approach to reach the advanced C9-C34 intermediate 251 (Scheme A-2).

New nitric oxide releasing materials

McKinlay, Alistair C. — Wed, 23 Jun 2010 00:00:00 GMT

Abstract: The aim of this thesis was to examine the ability of metal organic frameworks (MOFs) to store and controllably release biologically significant amounts of nitric oxide (NO). Initial work involved the synthesis of a series of isostructural MOFs, known as M-CPO-27, which display coordinatively unsaturated metal sites (CUSs) when fully activated (guest solvent molecules both coordinated and uncoordinated to the metal atom are removed). Two of these frameworks (Ni and Co CPO-27) displayed exceptional performance over the entire cycle of activation, storage and delivery showing the largest storage and release of NO of any known porous material (up to 7 mmolg⁻¹). These frameworks would therefore be considered for initial research into the formulation of MOFs, for possible use in medical applications. It was shown that they still release large amounts of NO even when placed inside porous paper bags, creams or hydrocolloids. The other versions of M-CPO-27 also displayed significant adsorption of NO however they show poor total NO release. It was also shown that it is possible to synthesise both Ni and Co CPO-27 using microwave synthesis without any detrimental effect to the porous structure. Several iron-based MOFs were also investigated for NO storage and release. The results showed that Fe MIL-88 based structures adsorb good amounts of NO but only release a small amount of the irreversibly adsorbed NO. Two successfully amine grafted giant pore MOFs were then investigated to attempt to improve the NO adsorption and release. This result was not observed however, due to the poor total amine grafting coverage and pore blockage resulting from the amines. In-situ IR studies reveal that when exposed to NO, activated Fe MIL-100 forms a chemical bond with the NO. The studies also displayed that when water is then allowed to attempt to replace the NO that only a small amount of NO is actually released, the majority of the NO either remains chemically bonded to the Fe atom or forms N₂O in conjunction with a Fe-OH group. Other MOFs were also successfully synthesised and characterised for NO storage and release. Both Ni succinate and Ni STA-12 display good adsorption and excellent release of NO. This indicates that Ni based MOFs show the best results for NO adsorption and release. In the conclusion of the thesis I am able to categorise the NO release ability of MOFs based on composition and formulate a theory as to why this happens.

Characterisation of the ceria and yttria co-doped scandia zirconia; produced by an innovative sol-gel and combustion process

de Carvalho Tomás, Eduarda M. S. — Wed, 23 Jun 2010 00:00:00 GMT

Abstract: In the last decade new materials appeared that are candidates to be used as an electrolyte in a Solid Oxide Fuel Cell, SOFC. Some materials show high ionic conductivity but lack in important properties, such as mechanical stability or chemical compatibility with other materials in the fuel cell. Scandia Stabilised Zirconia, SSZ, became a possibility when the scandia price dropped with the opening of the Chinese and Russian markets. In the starting system Ce[subscript(x)]Y[subscript(0.2-x)]Sc₀.₆Zr₃.₂O[subscript(8-δ)], (0≤x≤0.2), scandia is introduced to improve conductivity and stabilise the cubic phase; yttria is introduced to fully stabilise the cubic phase and ceria to enhance conductivity lost with the introduction of yttria. The aim of this project is to develop a reliable new method to produce quality ceramics that are not strongly composition dependent, then to prepare a range of compositions and compare intrinsic properties without having to be concerned that poor sintering dominates conduction properties. This project can be divided in two sections, the first section the powder production method, the characteristics of the powders and its final products are in focus. In the second section the relation between electric characteristics and microstructure of the material is reported. In the first section, the effect of different compositions of the system Ce[subscript(x)]Y[subscript(0.2-x)]Sc₀.₆Zr₃.₂O[subscript(8-δ)], (0≤x≤0.2) is studied, in terms of structure, phase and microstructure. The nature, size and shape of the powders are discussed, and their effect on the final product. The sol-gel and combustion method gives the formation of hard agglomerates (shells), during the combustion, a wide range of grain sizes, between less than 1µm and 200 µm, and the formation of grains with non spherical shape. In this project, the sol-gel and combustion process and solid state method are also compared. In the second section of this project, AC Impedance measurements, as a function of temperature, oxygen partial pressure and time are discussed. The Arrhenius plot for all compositions shows two regions (high and low temperature) and the change of region occurs at 580 °C. At low temperatures there is a slight difference between compositions but this difference is less at high temperatures. The obtained ionic conductivity, at 350 °C, varies from 3.84×10⁻⁶ to 5.53×10⁻⁵ S/cm; at 700 °C, ionic conductivity from 0.013 to 0.044 S/cm. At low temperatures, the activation energy associated with bulk process is generally lower than grain boundary process; for example, the composition Ce₀.₁Y₀.₁Sc₀.₆Zr₃.₂O₇.₆₅ has an activation energy, for the bulk process, of 1.05 eV and an activation energy, for the grain boundary process, of 1.17 eV. For compositions with higher ceria content, activation energy, for bulk and grain boundary, have similar values. The AC impedance as function of oxygen partial pressure show that the amount of ceria introduced as an effect on the conductivity at low oxygen partial pressure. For the sample with no ceria in its composition, Y₀.₂Sc₀.₆Zr₃.₂O₇.₆₀, the conductivity does not vary significantly as the oxygen partial pressure is decreased; for oxygen partial of 0.21 atm, conductivity is 0.018 S/cm and when oxygen partial pressure is approximately 10⁻²⁴ atm conductivity is 0.018 S/cm. For the sample with a higher content of ceria, Ce₀.₁₂Y₀.₀₈Sc₀.₆Zr₃.₂O₇.₆₆, there is a decrease in conductivity while oxygen partial pressure decreases; and there is also the appearance of a semi-circle for lower oxygen partial pressures. For oxygen partial pressure approximately 0.21 atm, conductivity is 0.019 S/cm, but when oxygen partial pressure is decreased to 10⁻²⁴ atm conductivity decreases to 0.011 S/cm. AC impedance measurements as a function of annealing time at 600 °C were performed. Total conductivity is fairly stable, for all compositions, until 1800 hours but after this time, conductivity slowly decreases. Some compositions show a second semi-circle in the AC impedance spectra, either from the beginning, time equals 0 hours, or after some working hours. Here, the changes in conduction and conduction processes with time are discussed.

Towards the development of selective hydrocarbon oxygenation catalysts

Guisado Barrios, Gregorio — Tue, 09 Mar 2010 00:00:00 GMT

Abstract: The synthesis of pure tris(6-hydroxymethyl-2-pyridylmethyl)amine (H₃L₁₁) is reported for the first time. New complexes of H₃L₁₁ with copper(II), manganese(II) and iron(III) have been characterised by X-ray crystallography. Linear [Fe₃(L₁₁)₂](ClO₄)₃ reveals the tightest Fe-O-Fe angle (87.6°) and shortest Fe...Fe distance (2.834 Å) presently found for a weakly antiferromagnetically-coupled high spin alkoxide-bridged polyiron(III) system. H₃L₁₁ provides a route to various hydrophobic peralkylated TPA ligand derivatives for creating a hydrophobic pocket for the assembly of iron catalysts for the novel 1-hydroxylation of n-alkanes. New 6-py substituted TPA ligands containing methyl (L₁₅) and n-octyl (L₁₆) ether linkages were synthesised via alkylation. Two further novel 6-py substituted ligands were synthesized incorporating n-hexyl substituents on one (L₂₁) and two (L₂₂) of the py moieties. Here a urea spacer group was used to promote hydrogen–bond assisted heterolytic O-O cleavage (generation of the potent FeV=O oxidant) within the hydroxoperoxoiron(III) precursor. High spin [FeII(L)(CH₃CN)[subscript(x)]](CF₃SO₃)₂ complexes (x = 0–2, L = L₁₅,₁₆,₂₁,₂₂) were characterised in solution by ¹H NMR. The structure of [Fe(L₂₂)](CF₃SO₃)₂ reveals a distorted iron(II) centre bound to four N atoms and two urea carbonyls. Iron(II) complexes of H₃L₁₁, L₁₅,₁₆,₂₁,₂₂ and tris(6-Br)-TPA (L₂₄), were investigated for catalysis of the oxygenation of cyclohexane by H₂O₂. Reaction of the iron(II) complexes with H₂O₂ and [superscript(t)]BuOOH was followed by time-resolved EPR and UV-VIS spectrophotometry. A correlation between the observed catalytic activity and the nature of the FeIII(L)-OOR intermediates generated is apparent. A convenient ‘one-pot’ synthesis of benzene-1,3,5-triamido-tris(l-histidine methyl ester) is reported along with attempts at preparing N,N’-bis(pyridylmethyl)-1,3- diaminopropane-2-carboxylic acid (L₂₅), a new water soluble pyridine-amine ligand. The final demetallation step resulted in ligand hydrolysis to the novel amino acid; 1,3-diaminopropane- 2-carboxylic acid which was characterised as its HCl salt by X-ray crystallography.

New approaches for C-F bond formation in organic chemistry

Launay, Guillaume — Wed, 23 Jun 2010 00:00:00 GMT

Abstract: The importance of fluorinated organic molecules has grown over the last 50 years, particularly in the pharmaceutical and agrochemical industries. Therefore the development of new methods for fluorination is a very attractive research area. In Chapter 1, the properties and impact of the fluorine atom on organic molecules are overviewed. Existing electrophilic and nucleophilic fluorination methods are reviewed, and new developments in asymmetric fluorination are discussed. The emergence of the Prins fluorination reaction as a side product in BF₃.OEt₂ catalysed processes has been investigated as a synthesis method in Chapter 2. Indeed, it is possible to form 4-fluorotetrahydropyrans with some diastereoselectivity from an allylic alcohol and an aldehyde with a stoichiometric amount of BF₃.OEt₂. During this study, formation of 4-fluoropiperidines from N-tosyl-4-butenylamine was achieved. Optimisation of reaction conditions was investigated such as the solvent, the reaction temperature and the influence of substituents on the alcohol and the aldehyde reagents. A ring-opening reaction of 4-fluoro-2-phenyltetrahydropyran was successfully performed. Both oxa-Prins and aza-Prins fluorination reactions were investigated under microwave conditions, allowing reduced reaction times, a process that had a minimum impact on the diastereoselectivity. Attempt to form γ-hydroxy-α-vinylfluorides by the reduction-fluorination of propargylic alcohols with aluminium hydride, or by Horner-Emmons reaction with diethyl (fluoromethyl)phosphonate are reported in Chapter 3. Unfortunately these approaches were unsuccessful in the preparation of γ-hydroxy-α-vinylfluorides. Attempts to fluorinate epoxides by α-lithiation and then treatment with electrophilic fluorination reagents gave encouraging results, but the products could not be purified and characterised due to an apparent instability.

Integrating replication processes with mechanically interlocked molecules

Vidonne, Annick — Mon, 30 Nov 2009 00:00:00 GMT

Abstract: In the last twenty years, chemists have devised numerous synthetic chemical systems in which self-replication operates, demonstrating that molecules can replicate themselves without the aid of enzymes and that self-replication is not a prerogative of nucleic acids only. However, the coupling of replication to other recognition-mediated events and its exploitation in the amplification of large supramolecular assemblies, such as mechanically interlocked molecules, have remained unexplored areas. Among mechanically interlocked molecules, rotaxanes represent particularly attractive targets because of their application as molecular switches. This thesis describes how the recognition-mediated synthesis of a rotaxane can be combined to the amplification of its structure by replication. Kinetic models for the integration of self-replication with the formation of a rotaxane are presented. The logical steps required to convert these models into molecular structures through consideration of the design criteria highlighted by the models are discussed and executed. The macrocyclic component is an essential part of a rotaxane. The synthesis of several novel macrocycles is presented. Their ability to bind guests in their cavities through hydrogen bonds was probed. The best macrocycle/guest pairs were integrated in the formation of rotaxanes. Further investigations on the stoppering reaction and on the various recognition processes involved in the system lead ultimately to the construction of self-replicating rotaxanes.

Pd catalysed synthesis of phosphines for homogeneous catalysis

Damian, Karen Serena — Thu, 01 Jan 2009 00:00:00 GMT

Abstract: The synthesis of ligands has been identified as the limitation for wider application of catalytic asymmetric synthesis. Indeed, synthesis of phosphorus-based ligands, has been often shown to be challenging and not always efficient. It has also been observed that subtle changes in the ligand structure can lead to big differences in the catalytic activity of the ligand when coordinated to a metal. Therefore, it was considered useful to develop a methodology in order to obtain a library of phosphines. The first chapter of the thesis is a review of recent development in catalytic phosphine synthesis. In the second chapter of this thesis, the microwave mediated Suzuki cross coupling reaction has been investigated. In particular, attention has been focussed on the coupling of different arylboronic acids to chloroarylphosphine oxides, which are, in general, considered challenging coupling partners for this type of reaction. The reaction conditions have been optimised starting from the coupling of phenylboronic acid to tris(4-chlorophenyl)phosphine oxide. Different solvents, bases, and catalysts have been then tested and the better conditions have been developed for this substrate. Indeed, it was shown that the coupling occurs in only 30 minutes at 140°C, leading to reasonably high yields. These conditions were then applied to two other different chloroarylphosphine oxides with a range of boronic acids, with the aim to verify if the optimised reaction conditions could be applied to other substrates and it was noticed that good yields could be attained. This methodology led us to obtain a library of phosphine oxides. It was then decided to investigate the reduction of phosphine oxides under microwave irradiation. This reaction occurs under conventional heating but it can take several hours. It was observed that reaction times could be importantly reduced when reducing some phosphine oxides under microwave heating. It was found that some phosphine oxides are reduced rapidly under conventional conditions but for more difficult substrates to reduce there are significant advantage to microwave method. We decided to investigate the microwave mediated P-C bond forming reaction, with the aim to rapidly synthesise a library of phosphines cleanly. The conditions were optimised at first using o- trifluoromethylbromobenzene as the substrate. Once the appropriate reaction conditions and catalyst were identified, the reaction was run on other substrates to verify that this could be a general methodology for the synthesis of phosphines. It was found that it is indeed a general method for the synthesis of monophosphines. However, the synthesis of diphosphines with the microwave assisted P-C bond forming reaction on dibromo- and diiodo- aryl compounds proved to be very challenging. The fourth chapter presents different attempts for the synthesis of the new ligand Ph-DuPHOS. The synthesis of this ligand was considered interesting because of the previous results of other phospholane-based ligands, such as Ph-BPE and Me-DuPHOS. However, the synthesis of this ligand has proven to be elusive. A monodentate P-N phospholane-based ligand was prepared and its catalytic activity was tested in the rhodium catalysed hydrogenation of alkenes. Moreover, a bidentate (1,2-bisphospholano)xylene ligand was also prepared and its catalytic activity was also tested in the rhodium catalysed hydrogenation of alkenes. This latter ligand was also used in the hydroxycarbonylation of styrene, since for this reaction bulky diphosphines are required to give branched selectivity. In hydroxycarbonylation it is very rare to give good branched selectivity and there were no examples of substantial enantioselectivity prior to this work. The high regioselectivity and moderate e.e.’s observed suggest promise for future studies. Finally, mechanistic studies on the hydroxycarbonylation of styrene have been carried out in order to investigate the intermediates involved in the reaction as well as the role of the promoters. The possibility of (1-chloroethyl)benzene was proposed as the active intermediate of the reaction. Our results have disproved this possibility, suggesting that the reaction is likely to proceed through the hydride mechanism.

The rechargeable lithium/air battery and the application of mesoporous Fe₂O₃ in conventional lithium battery

Bao, Jianli — Thu, 01 Jan 2009 00:00:00 GMT

Abstract: By replacing the intercalation electrode with a porous electrode and allowing lithium to react directly with O₂ from the air, the new rechargeable Li/O₂ battery system was studied. The porous cathode is comprised of carbon, catalyst and binder. The effect of every component was investigated. The catalyst was believed to play an important role in the performance of the electrode. A number of potential materials have been examined as the catalyst for the O₂ electrode. It suggests that the nature of the catalyst is a key factor controlling the performance of the O₂ electrode. Several catalysts based on first row transition metal oxides each with three different morphologies, bulk, nanoparticulate and mesoporous were studied. The influence of the morphology on the discharge and charge voltage, discharge capacity and cyclability were examined. Among all the catalysts studied, α-MnO₂ nanowires was found to be the best candidate. The reversible capacities of 3000 mAhg⁻¹(normalised by the mass of carbon) or 505 mAhg⁻¹ (based on the total mass of cathode + O₂ ) was obtained. Some of other factors, such as type of carbon, type of binder, type of electrolyte, the construction of cathode and the modification of the catalyst were also investigated, even just in the early stage. Capacity fading during cycling is the main problem in all the cases. A number of experiments were carried out to understand and attempt to avoid the fading problem. After successful synthesis of mesoporous α-Fe₂O₃ with unique properties (by Jiao et al.), the application of these materials in conventional Li battery was studied. Mesoporous α-Fe₂O₃ with ordered walls, mesoporous α-Fe₂O₃ with disordered walls and Fe₂O₃ nanoparticles were examined. It was also applied to examine the different factors that influence the rate of conversion electrodes, i.e., Li⁺ and e⁻ transport to and within the particles, as well as the rate of the two-phase reaction, demonstrating that for this conversion reaction electron transport to and within the particles is paramount.

Development of new proton conducting materials for intermediate temperature fuel cells

Xu, Xiaoxiang — Mon, 22 Feb 2010 00:00:00 GMT

Abstract: The work in this thesis mainly focuses on the preparation and characterization of several phosphates and solid oxide systems with the aim of developing new proton conducting materials for intermediate temperature fuel cells (ITFCs). Soft chemical methods such as sol-gel methods and conventional solid state methods were applied for the synthesis of these materials. Aluminum phosphate obtained by a solution method is single phase and belongs to one of the Al(H₂PO₄)₃ allotropies with hexagonal symmetry. The material is stable up to 200°C and decomposes into Al(PO₃)₃ at a higher temperature. The electrical conductivity of pure Al(H₂PO₄)₃ is on the order of 10⁻⁶-10⁻⁷ S/cm, very close to the value for the known proton conductors AlH₃(PO₄)₂•3H₂O and AlH₂P₃O₁₀•2H₂O. Much higher conductivity is observed for samples containing even a trace amount of excess H₃PO₄. It is likely that the conduction path gradually changes from grain interior to the surface as the acid content increases. The conductivity of Al(H₂PO₄)₃-0.5H₃PO₄ exhibited a good stability over the measured 110 hours. Although tin pyrophosphate (SnP₂O₇) has been reported to show a significantly high conductivity (~10⁻² S/cm) at 250°C in various atmospheres, we observed large discrepancies in the electrical properties of SnP₂O₇ prepared by different methods. Using an excess amount of phosphorous in the synthetic procedure generally produces SnP₂O₇ with much higher conductivity (several orders of magnitude higher) than samples with stoichiometric Sn:P ratios in their synthetic procedure. Solid state ³¹P NMR confirmed the presence of residual phosphoric acid for samples with excess starting phosphorous. Transmission Electron Microscope (TEM) confirmed an amorphous layer covered the SnP₂O₇ granules which was probably phosphoric acid or condensed phases. Thereby, it is quite likely that the high conductivity of SnP₂O₇ results mainly from the contribution of the residual acid. The conductivity of these samples exhibited a good stability over the measured 80 hours. Based on the observations for SnP₂O₇, we developed a nano core-shell structure based on BPO₄ and P₂O₅ synthesised by solid state methods. The particle size of BPO₄ using this method varied between 10-20 nm depending on the content of P₂O₅. TEM confirmed the existence of an amorphous layer that is homogeneously distributed. The composite exhibits the highest conductivity of 8.8×10⁻² S/cm at 300°C in air for 20% extra P₂O₅ and demonstrates a good stability during the whole measured 110 hours. Polytetrafluoroethylene (PTFE) was introduced into the composites in order to increase malleability for fabrication. The conductivity and mechanical strength were optimized by adjusting the PTFE and P₂O₅ content. These organic-inorganic composites demonstrate much better stability at elevated temperature (250°C) over conventional SiC-H₃PO₄-PTFE composites which are common electrolytes for phosphoric acid fuel cells (PAFCs). Fuel cells based on BPO₄-H₃PO₄-PTFE composite as the electrolyte were investigated using pure H₂ and methanol as fuels. A maximum power density of 320 mW/cm² at a voltage of 0.31 V and a maximum current density of 1.9 A/cm² at 200°C were observed for H₂/O₂ fuel cells. A maximum power density of 40 mW/cm² and maximum current of 300 mA/cm² 275°C were observed when 3M methanol was used in the cell. Phosphoric acid was also introduced into materials with internal open structures such as phosphotungstic acid (H₃PW₁₂O₄₀) and heteropolyacid salt ((NH₄)₃PW₁₂O₄₀), for the purpose of acquiring additional connections. The hybrids obtained have a cubic symmetry with enlarged unit cell volume, probably due to the incorporation of phosphoric acid into the internal structures. Solid state ³¹P NMR performed on H₃PW₁₂O₄₀-xH₃PO₄ (x = 0-3) showed additional peaks at high acid content which could not assigned to phosphorus from the starting materials, suggesting a strong interaction between H₃PW₁₂O₄₀ and H₃PO₄. The conductivity of hybrids was improved significantly compared with samples without phosphoric acid. Fourier transform infrared spectra (FT-IR) suggest the existence of large amount of hydrogen bonds (OH••••O) that may responsible for the high conductivity. A H₂/O₂ fuel cell based on H₃PW₁₂O₄₀-H₃PO₄-PTFE exhibited a peak power density of 2.7 mW/cm² at 0.3 V in ambient temperature. Solid oxide proton conductors based on yttrium doped BaZrO₃ were investigated by introducing potassium or lanthanum at the A-sites. The materials were prepared by different methods and were obtained as a single phase with space group Pm-3m (221). The unit cell of these samples is slightly smaller than the undoped one. The upper limit of solid solution formation on the A-sites for potassium is between 5 ~ 10% as introducing more K results in the occurrence of a second phase or impurities such as YSZ (yttrium stabilized zirconium). K doped Barium zirconates showed an improved water uptake capability even with 5% K doping, whereas for La doped ones, water uptake is strongly dependent on particle size and synthetic history. The conductivity of K doped BaZrO₃ was improved by a factor of two (2×10⁻³ S/cm) at 600°C compared with undoped material. Fuel cells based on Pt/Ba₀₋₉₅K₀₋₀₅Zr₀₋₈₅Y₀₋₁₁Zn₀₋₀₄O[subscript(3-δ)]/Pt under humidified 5% H₂/air conditions gave a maximum power density 7.7 mWcm⁻² at 718°C and an interfacial resistance 4 Ωcm⁻². While for La doped samples, the conductivity was comparable with undoped ones; the benefits of introducing lanthanum at A-sites may not be so obvious as deficiency of barium is one factor that leads to the diminishing conductivity. Description: Electronic version excludes material for which permission has not been granted by the rights holder

Novel methodology for the synthesis of ¹³C-Labelled phenols and its application to the total synthesis of polyphenols

Marshall, Laura J. — Wed, 23 Jun 2010 00:00:00 GMT

Abstract: The base-catalysed reaction of 4H-pyran-4-one with a range of nucleophiles, namely diethyl malonate, ethyl acetoacetate, nitromethane, acetylacetone and ethyl cyanoacetate, was developed as a reliable, high yielding method for the preparation of para-substituted phenols. The methodology was extended to include the use of the substituted pyranones, maltol, 2,6-dimethyl-4H-pyran-4-one and diethyl chelidonate. Reactions were studied using conventional heating methods and microwave irradiation. Microwave irradiation had definite beneficial effects, with improved yields, reduced reaction times and cleaner reaction profiles. The potential of this methodology was examined for the regioselective placement of ¹³C-atoms into benzene rings using ¹³C-labelled nucleophiles or ¹³C-labelled 4H-pyran-4-ones. [3,5-13C₂]4H-Pyran-4-one and [2,6-13C₂]4H-pyran-4-one were prepared from various ¹³C-labelled versions of triethyl orthoformate and acetone. This methodology was applied to the synthesis of [1,3,5-¹³C₃]gallic acid, via the base-catalysed reaction of [3,5-¹³C₂]4H-pyran-4-one with diethyl [2-¹³C]malonate, followed by subsequent transformations to yield [1,3,5-¹³C₃]gallic acid. The preparation of [2-¹³C]phloroglucinol was carried out via [2-¹³C]resorcinol, with regioselective placement of a single ¹³C-atom into the aromatic ring. This was accomplished from non-aromatic precursors, with the source of the ¹³C-atom being [¹³C]methyl iodide. The key step in this synthesis was the introduction of the third hydroxyl group, which was achieved using a modified iridium-catalysed C-H activation/borylation/oxidation procedure. The scope of an existing C-H activation/borylation reaction was modified and expanded to include a range of protected resorcinol derivatives. A catalyst system was developed which allowed high conversion to the intermediate arylboronic acids, followed by oxidation using aqueous Oxone® to yield the corresponding phenols. Finally, to demonstrate the potential of these new methods for application in the synthesis of isotopically labelled natural products and polyphenols, the syntheses of ¹³C-labelled anthocyanins were studied. A route was developed that could be applied to the synthesis of either cyanidin-3-glucoside or delphinidin-3-glucoside. Only the final coupling/cyclisation step to yield the desired anthocyanin targets remains to be carried out. Description: Electronic version excludes material for which permission has not been granted by the rights holder

Molecular probes for the evaluation of three isomerase enzyme mechanisms in secondary metabolism

Nasomjai, Pitak — Fri, 01 Jan 2010 00:00:00 GMT

Abstract: This thesis is focused on an investigation of the mechanisms of three enzymatically mediated carbon skeleton isomerisation reactions. Chapter 1 provides an overview of some representative examples of the carbon skeleton rearrangement reactions in enzymology. Chapter 2 describes the preparation and use of fluorolittorines to explore the mechanism of the rearrangement of the tropane alkaloid littorine to hyoscyamine which is a reaction mediated by the cytochrome P450 enzyme. Chapter 3 describes the synthesis of D-ribose-1-phosphonates and the cyclic phosphonates (phostone) that are candidate inhibitors of the enzymatic isomerisation of 5-fluoro-5-deoxy-ribose-1-phosphate (5-FDRP) to 5-fluoro-5-deoxy-ribulose-1-phosphate (5-FDRulP), an important step in fluorometabolite biosynthesis pathway in Streptomyces cattleya. Chapter 4 describes the synthesis of 5-hydroxy-3,4-dioxohexylphosphonate and [5-13C]-5-hydroxy-3,4-dioxohexylphosphonate. These compounds are proposed as candidates for the transition state of the retro-aldol/aldol mechanism of the enzymatic isomerisation of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methylerythitol-phophate-2-phosphate (MEP) in the biosynthesis of isopentenyl pyrophosphate (IPP) and dimethylallyl pyrophosphate (DMAPP). The influence of pH on tautomerisation of [5-13C]-5-hydroxy-3,4-dioxohexylphosphonate is also described. Chapter 5 describes the general chemical and biochemical methodologies utilised in this research project.

Evolving complex systems from simple molecules

Sadownik, Jan — Thu, 01 Jan 2009 00:00:00 GMT

Abstract: Until very recently, synthetic chemistry has focussed on the creation of chemical entities with desirable properties through the programmed application of isolated chemical reactions, either individually or in a cascade that afford a target compound selectively. By contrast, biological systems operate using a plethora of complex interconnected signaling and metabolic networks with multiple checkpoint controls and feedback loops allowing biological systems to adapt and respond rapidly to external stimuli. Systems chemistry attempts to capture the complexity and emergent phenomena prevalent in the life sciences within a wholly synthetic chemical framework. In this approach, complex phenomena are expressed by a group of synthetic chemical entities designed to interact and react with many partners within the ensemble in programmed ways. In this manner, it should be possible to create synthetic chemical systems whose properties are not simply the linear sum of the attributes of the individual components. Chapter 1 discusses the role of complex networks in various aspects of chemistry- related research from the origin of life to nanotechnology. Further, it introduces the concept of Systems chemistry, giving various examples of dynamic covalent networks, self-replicating systems and molecular logic gates, showing the applications of complex system research. Chapter 2 discusses the components of replicator design. Further, it introduces a network based on recognition mediated reactions that is implemented by length- segregation of the substrates and displays properties of self-sorting. Chapter 3 presents a fully addressable chemical system based on auto- and cross- catalytic properties of product templates. The system is described by Boolean logic operations with different template inputs giving different template outputs. Chapter 4 introduces a dynamic network which fate is determined by a single recognition event. The replicator is capable of exploiting and dominating the exchanging pool of reagents in order to amplify its own formation at the expense of other species through the non-linear kinetics inherent in minimal replication. Chapter 5 focuses on the development of complex dynamic systems from structurally simple molecules. The new approach allows creating multicomponent networks with many reaction pathways operating simultaneously from readily available substrates.

Oxime derivatives : versatile reagents for radical-mediated syntheses of heterocycles

Portela-Cubillo, Fernando — Thu, 01 Jan 2009 00:00:00 GMT

Abstract: A summary of tin hydride mediated reactions in generating radicals in organic synthesis is presented, together with some of the many alternative methods now available for conducting radical reactions. Particular attention has been given to the iminyl radical and the development of tin-free organic radical precursors. This introduction is followed by three chapters describing research on the development of two new sources of iminyl radicals and their application in syntheses of aza- heterocyles. O-Phenyl oxime ethers are the first iminyl radical precursors described in the thesis. Microwave thermolyses of oxime ethers released iminyl and phenoxyl radicals under comparatively mild conditions and with short reaction times. Few microwave-assisted synthetic methods, based around radical intermediates, are known. The mild and neutral conditions associated with radical chemistry, and the ability of radicals to perform intramolecular cyclisations, together with the virtues of MAOS, make their combination a very useful tool in syntheses of aza-heterocycles. A comprehensive study of intramolecular additions of iminyl radicals onto several radical acceptors, alkenes, alkynes, phenyl rings and indoles, is described. Furthermore, a wide range of nitrogen heterocyles with potential biological activity was prepared making use of this methodology. Intramolecular iminyl radical cyclisation onto imines via microwave irradiation was another process extensively studied. Microwave assisted syntheses of dihydroquinazolines and quinazolines are described. The precursor O-phenyl oxime ethers enable imine formation to be assimilated with iminyl radical generation before subsequent cyclisation. Clean, fast and high yielding methodology was therefore developed for the syntheses of these highly interesting heterocycles which form the basis of many pharmaceutical products. Dioxime oxalates were the second type of precursor investigated as sources of iminyl radicals. Homolytic cleavage of their N-O oxime bonds occurred on photolysis releasing two molecules of CO₂ and two iminyl radicals in a clean and atom-efficient process. A facile route to dioxime oxalates with a range of radical acceptors in suitable positions is described. ESR spectroscopy was used to demonstrate that dioxime oxalates dissociate on photolysis to give iminyl radicals in the presence of photosensitizer. This technique also confirmed the proposed mechanisms of radical cyclisation onto double bonds and several 2-azacyclopentylmethyl radicals were characterized by ESR spectroscopy. In several instances both the uncyclized iminyl radical, and the cyclised C-radical, could be simultaneously detected, and their concentrations determined. ESR spectroscopy was then profitably used to determine 5-exo-cyclization rate constants of iminyl radicals onto double bonds. Finally, the syntheses of several heterocycles from dioxime oxalates are described. Photolytic dissociation of dioxime oxalates containing alkenyl groups yielded iminyl radicals that ring closed to 3,4-dihydro-2H-pyrroles in toluene solution. The syntheses of phenanthridines, and the natural product trisphaeridine, were also accomplished by UV irradiation of dioxime oxalates containing aromatic rings as the radical acceptor.

Structural and catalytic studies of novel Au/Ni enantioselective catalysts

Trant, Aoife Geraldine — Tue, 01 Jan 2008 00:00:00 GMT

Abstract: Heterogeneous enantioselective catalysis strives to create new successful catalysts. One of the most researched examples is the hydrogenation β-ketoesters using nickel-based catalysts. A hindrance in the industrial scale-up of this enantioselective hydrogenation reaction is the lack of exact details of how chirality is bestowed onto this achiral metal surface. While a number of mechanisms have been proposed to explain the enantioselective behaviour of this system, these are predominantly based on catalytic studies. An alternative approach is through surface science studies examining the morphology, structure and composition of this catalytic system. A range of ultrahigh vacuum based model studies investigating the structure and composition of ultrathin Ni films and Ni/Au surface alloys on Au{111} using the techniques of Scanning Tunnelling Microscopy (STM) and Medium Energy Ion Scattering (MEIS) are presented in this thesis. In addition, the adsorption of the chiral modifier (S)-glutamic acid has been studied on these surfaces using vibrational spectroscopy (Reflection Absorption Infrared Spectroscopy (RAIRS)) and Temperature Programmed Desorption (TPD). Furthermore, MEIS has been used to investigate the influence of (S)-glutamic acid on the surface composition of Au/Ni model catalysts detecting effects such as adsorbate induced segregation and de-alloying behaviour. In addition, colloidal preparative routes have been used to synthesise bimetallic Au/Ni nanoparticles supported on mesoporous silica. The catalysts are then modified by the adsorption of the chiral ligand, (R,R)-tartaric acid. Finally, the catalysts are tested for their activity and enantioselectivity with respect to methylacetoacetate hydrogenation. At each stage the catalysts are characterised by a combination of Extended X-ray Absorption Fine Structure (EXAFS); Transmission Electron Microscopy (TEM), Energy Dispersive X-ray Spectrometry (EDS) and Atomic Absorption Spectroscopy (AAS).

Synthesis studies to single stereoisomers of the vicinal trifluoroalkane motif

Brunet, Vincent — Thu, 01 Jan 2009 00:00:00 GMT

Abstract: This thesis focuses on the construction of individual isomers of the R-CHF-CHF-CHF-R’ motif. The multi-vicinal fluorine motif is new in organic chemistry and therefore stereoselective methods giving rapid access to these motifs and with flexibility need to be explored. The research in the thesis succeeded in the preparation of (2S,3R,4S)-314 and (2S,3S,4R)-328. In Chapter 1, an overview of the impact of fluorine in organic molecules is given. Recent developments in asymmetric electrophilic and nucleophilic fluorination are described, as well as the preparation of multivicinal fluoroalkane motifs. Aldol reactions of either (R)- or (S)-N-(α-fluoropropyl)-2-oxazolidinones, mediated by TiCl 4 are reported in Chapter 2. Such aldol reactions gave rise to identical α-fluoro-β-hydroxy- aldol products with high diastereoselectivities (95% dr). After removal from the auxiliary α- fluoro-β-hydroxy- products were converted to the corresponding α,β-difluoro products. The synthesis of non symmetric vicinal trifluoro motifs (2S,3R,4S)-314 and (2S,3S,4R)-328 is described in Chapter 3. They were prepared by direct fluorination in three steps of the corresponding (2R,3R,4R)-erythro and (2R,3S,4S)-threo enantio-enriched epoxy-alcohols. The two erythro and threo epoxy-alcohol isomers behave very differently during the first fluorination step and then an attempt to study and rationalise this difference in behaviour is made.

Novel bulky fluorinated ligands for homogeneous catalysis

Frew, Jamie J. R. — Tue, 01 Jan 2008 00:00:00 GMT

Abstract: A series of novel monodentate and bidentate phosphine ligands substituted with bulky tert-butyl and fluorinated aryl groups have been synthesised. Borane protection has proved to be an excellent method for easy synthesis and purification of bidentate ligands in some cases. However, several of the bulky fluorinated ligands do not form stable borane complexes leading to complications in the synthesis and purification of these compounds. By reaction with transition metal platinum and palladium precursors, it was possible to form dichloride complexes from the synthesised ligands, which were characterised by X-ray crystallography. The complexes were found to be effective catalysts for the hydroxycarbonylation of vinyl arenes (yields of up to 95 % with 3 mol% catalyst). An unsymmetrical bidentate complex (3.18) in combination with paratoluenesulfonic acid and LiCl promoters has given exceptional (for a diphosphine ligand) regioselectivity for the branched acid (98.7 % branched) in the hydroxycarbonylation of styrene. The role of the promoters has been found to be crucial in deciding the activity and selectivity in this reaction. Description: Electronic version does not contain associated previously published materia

Templating approaches to the synthesis of new microporous materials for gas adsorption and separation

Castro, María — Tue, 01 Jan 2008 00:00:00 GMT

Abstract: Structure direction in the synthesis of phosphate-based materials (aluminophosphates, AlPOs; magnesiumaluminophosphates, MgAPOs; silicoaluminophosphates, SAPOs; magnesiumsilicoaluminophosphates, MgAPSOs), has been investigated through co-templating synthesis studies supported by molecular modelling. These solids have been characterised by diffraction and solid-state NMR, and their properties in gas adsorption and catalysis have been measured. The parameters in the hydrothermal synthesis of SAPO STA-7, St Andrews porous solid number 7, (SAV), in which the macrocycle 1,4,7,11- tetraazacyclotetradecane (cyclam) and tetraethylammonium (TEA) cations are used as co-templates, were investigated in detail. A new route involving a reversal of the mixing order of reagents leads to the formation of single crystals up to 50 μm with perfect tetragonal prismatic morphology that was not achieved via previous synthetic routes. For the first time in SAPO STA-7, X-ray diffraction locates the tetraethylammonium cation (TEA) in tg.tg. conformation. The synthesis and full characterisation of a novel aluminophosphate structure designated STA-14 (KFI) represents the first example of a designed synthesis of a zeotype. The synthesis route is based on a co-templating approach supported by molecular modelling to design the specific template for one of the two types of cages within the structure. The first, a larger type of cage, also present in AlPO-42 (LTA), is templated by the azaoxacryptand 4,7,13,16,21,41-diaza-1,10-bicyclo[8,8,8]- hexocosane (‘Kryptofix 222’, hereafter K222). The modelled co-template configuration, in this case TEA in the tt.tt configuration, was experimentally observed by X-ray diffraction. Modifying the gel chemistry leads to SAPO and MgAPSO STA-14, which display high pore volumes for N₂ adsorption, similar to those of STA-7 and SAPO-34 (CHA). Furthermore, during these synthetic studies, a novel fully tetrahedrally- coordinated magnesiumaluminophosphate layer phase has been prepared, with a structure of relevance to hypothetical VPI-5 (VFI) type extended structures. Molecular modelling was also applied in another aluminophosphate-based material, that of STA-2 (SAT), to predict a template that could be prepared from inexpensive reagents. Existing routes required the use of expensive quinuclidine as a precursor to the template 1,4-bisquinuclidinium butane. The template suggested by modelling, 1,4-diazabicyclo (2,2,2)octane butane (NC₆H₁₂N⁺-C₄H₈-⁺NC₆H₁₂N), labelled DABCO_C4, templated AlPO STA-2 successfully. Structure characterisation of the as- prepared form of AlPO STA-2 using X-ray synchrotron data suggest the formation of Al- OH-Al units to accommodate the positively-charged template within the neutral framework and a combination of ¹³C, ¹⁴N and ¹⁵N NMR studies have been used to give further details of the template environment in the cages. The gas adsorption behaviour of the stable materials STA-7, STA-14 and STA-2 was evaluated for CO₂. High pressure adsorption (0 to 40 bars) on STA-7 and STA-14 shows similar behaviour due to their structural and chemical similarities. The total uptake of CO₂ for SAPO STA-7 is less than for the zeolite NaX (FAU) (3.4 and 5.2 mmolg -1 respectively at 373 K and 12 bars) but the usable capacity for pressure swing adsorption technology (PSA) between 1 to 20 bar for STA-7 is twice the value for NaX. The affinity of adsorption towards CO₂ and its low uptake at 1 bar made SAPO STA-7 a desirable sorbent for PSA. The zeotype affinity of adsorption for different probe gases is different, CO₂ >> CH₄ > CO, to that for zeolite NaX CO₂ >> CO > CH₄. Low pressure CO₂ adsorption (0 to 1 bar) in STA-7, STA-14 and STA-2 at temperatures between 273 and 303 K demonstrates that the topology and therefore the total free pore volume accessible to the gas molecules is the most important factor in determining the uptake in these solids, but that the composition and distribution of the silicon cations within the framework also has an important effect. For example at 273 K and 1 bar, the uptake of the STA-2 framework in the SAPO form is ca. 2wt% higher than in the AlPO form, but compared with SAPO STA-7, the uptake due to pore volume limitations is 10wt% lower under same conditions. In addition, the high quality of the SAPO STA-7 crystals obtained by the new route made them suitable in collaborations for the direct observation of diffusion of methanol by interference microscopy (IFM) and the study of their crystal growth by combined atomic force microscopy (AFM) and high resolution scanning electron microscopy (HRSEM). The catalytic applications of the STA-7 and STA-14 for the methanol-to-olefins reaction (MTO) and the argon adsorption at 87 K were also performed collaboratively. The results are reported and discussed here in the light of their structure and composition.

New strategies for the rhodium-catalysed aqueous-biphasic hydroformylation of medium chain alkenes

Desset, Simon L. — Mon, 30 Nov 2009 00:00:00 GMT

Abstract: Aqueous-biphasic organometallic catalysis is, as illustrated by the industrial hydroformylation of propene and butene, one of the most promising ways to overcome the intrinsic problem of catalyst separation in organometallic catalysis. However, for poorly water-soluble substrates, mass transfer limitations bring the reaction rate below any that could be economically viable, greatly limiting the scope of this elegant technology. We have studied three different strategies to overcome this limitation. We developed additives that speed up the reaction whilst retaining fast phase separation and good metal retention. Evidence suggests that those additives affect the reaction by forming emulsions with poor stability under the reaction conditions These emulsions increase the interfacial surface area but break after settling for a short time. We also developed ligands that allow the catalyst to be reversibly transported between an aqueous and an organic phase upon addition and removal of carbon dioxide. This allows the reaction to be carried out under homogeneous conditions, only limited by intrinsic kinetics, and the catalyst to be separated by aqueous extraction triggered by carbon dioxide. The catalyst can be returned to a fresh organic phase by flushing out the carbon dioxide. By applying this methodology for the hydroformylation of medium chain length alkenes, very high reaction rates were obtained and the catalyst could be recycle three times with excellent retention of activity and low metal leaching. This methodology could also be reversed with the reaction being carried out in an aqueous phase in the presence of carbon dioxide and extracting the catalyst into an organic solvent using nitrogen flushing. Finally, we briefly investigated the use of an oscillatory baffled reactor as a mean for mass transfer improvement for aqueous-biphasic hydroformylation. This new type reactor did not improve the performance of the system under the investigated conditions, but may require less energy input for equivalent agitation and mixing.

Studies of alternatives anodes and ethanol fuel for SOFCs

Corre, Gaël Pierre Germain — Mon, 30 Nov 2009 00:00:00 GMT

Abstract: This thesis explores the development of efficient engineered composite alternative anodes and the use of ethanol as a fuel for Solid Oxide Fuel Cells. SOFCs can in theory operate with fuels other than hydrogen. However, this requires the design of efficient alternative anode material that do not catalyze carbon formation and that are tolerant to redox cycles. An innovative concept has been developed that relies on the impregnation of perovskites into porous YSZ structures to form the anode functional layer. Catalysts are added to provide sufficient catalytic activity. Cells with anodes containing LSCM and Ce/Pd have displayed excellent performance. At 800°C, and with a 65 μm thick electrolyte, the power outputs were above 1W/cm² in humidified hydrogen and 0.7 W/cm² in humidified methane. These electrodes have shown the ability to reduce CO₂ electrochemically with an efficiency that is similar to that which can be achieved for H₂O electrolysis and the anodes could operate on pure CO₂. The importance of incorporating an efficient catalyst was demonstrated. The use of 0.5 wt% of Pd is sufficient to dramatically improve the performance in such electrodes. The microstructure of impregnated LSCM-YSZ composites plays an important role in the high performance obtained. A layer of LSCM nanoparticles covering the YSZ is formed upon reduction, offering a great surface area for electrochemical reactions. The fabrication method presented in this thesis is a powerful tool for designing microstructures in situ. Among the various fuels under consideration for SOFCs, ethanol offers outstanding advantages. Half cell measurements have been performed to characterize the performance of different types of anodes when operated on ethanol/steam mixtures. Steady performance was achieved on LSCM-CGO anodes. Carbon deposits from gas phase reactions have been evidenced and were found to be responsible for the performance enhancement when the cell is operated in diluted ethanol as compared to hydrogen. At high steam content, polarization resistances of LSCM-CGO-YSZ anodes in ethanol/ steam mixtures were shown to be below 0.3 Ω.cm² at 950°C.

Mesoporous crystalline metal oxides

Yue, Wenbo — Fri, 26 Jun 2009 00:00:00 GMT

Abstract: Mesoporous monocrystalline metal oxides (e.g. Co₃O₄, Cr₂O₃, NiO, CeO₂, In₂O₃ and WO₃) templated by SBA-15 or KIT-6 were synthesised successfully by using a simple solvent-free approach, the so-called solid-liquid method, which was the principal development of methodology in this project. A metal-containing precursor, whose melting point is lower than its decomposition temperature, was directly ground with a mesoporous silica and impregnated into the pores of the silica template after melting when the temperature was increased above its melting point. The liquid precursor then decomposed to form metal oxide inside the silica pores when the temperature was further increased to its decomposition temperature and crystallization temperature of the oxide. The structural characterisations of these porous metal oxides were performed by using TEM, XRD and N₂ adsorption/desorption techniques. The solid-liquid method is convenient and solvent-free. On the other hand, its limitation is that the precursor must have a melting point lower than its decomposition temperature. A novel porous single crystal of rutile TiO₂ as well as anatase nanocrystal-silica composite was also synthesised successfully for the first time using SBA-15 and KIT-6 as templates. These materials have interesting properties of proton conductivity, Li insertion and photoactivity. Likewise, the characterisation of porous TiO₂ was achieved by using XRD, TEM, SAED and N₂ adsorption/desorption. The residual SiO₂ component in porous TiO₂ was detected by using the EDX technique. Porous cubic metal oxides of Co₃O₄, NiO, CeO₂ and In₂O₃ were prepared using novel mesoporous silicas FDU-12 and SBA-16, which contain spherical nanocavities linked together by smaller windows. These porous materials have larger surface areas than those templated by SBA-15 and KIT-6. Unlike the cubic metal oxides, syntheses of porous crystals of non-cubic metal oxides such as rhombohedral Cr₂O₃, Fe₂O₃ and hexagonal TiO₂, WO₃ were not successful when using cage-containing mesoporous silicas as templates. The three-dimensional arrangements of nanospheres in porous crystals of cubic oxides mentioned above were observed by TEM and the corresponding larger surface areas were confirmed by N₂ adsorption/desorption technique. Additionally, fabrication of porous crystals of other metal oxides such as MgO, ZnO and ZrO₂ were unsuccessful by using either mesoporous silicas or mesoporous carbons as templates. Possible drawbacks of using mesoporous silica and carbon as templates were discussed.

Five-membered sulfur-nitrogen ring compounds

Matuska, Vit — Sun, 01 Nov 2009 00:00:00 GMT

Abstract: A series of 1,3,2,4,5-dithiadiazarsoles with the general formula RAs(S₂N₂) (R = Me, Et, i-Pr, t-Bu, Ph and Mes) have been prepared and characterised by multinuclear NMR, IR and Raman spectroscopies and mass spectrometry. The X-ray structures of PhAs(S₂N₂) and MesAs(S₂N₂) were determined. The low temperature X-ray structures of the half-sandwich 5,1,3,2,4-metalladithiadiazoles Cp*M(S₂N₂) (M = Co, Ir) were determined and Cp*Rh(S₂N₂) was prepared. All three metalladithiadiazoles were characterised by multinuclear NMR, IR and Raman spectroscopies and mass spectrometry. The X-ray structures of complexes [Cp*RhCp*]Cl,[Cp*Rh(μ-S₃N₂)(μ-S₂O₃)RhCp*] and Cp*Ir[S₂N₂(IrCl₂Cp*)] obtained during this work were determined. The low temperature X-ray structure of Roesky's sulfoxide (S₃N₂O) is presented together with assignments of its vibrational spectra as suggested by theoretical calculations. The experimental structures of the metalladithiadiazoles and that of Roesky's sulfoxide are compared with calculated geometries. A limited amount of simple experiments have been carried out with selected title compounds to get an insight into their reactivity.

Applications of X-ray crystallography: studies into the structural perturbations of peri-substituted naphthalene derivatives

Fuller, Amy L. — Tue, 01 Jun 2010 00:00:00 GMT

Abstract: The majority of research in this thesis uses X-ray crystallography to investigate the structural features of peri-substituted naphthalene compounds. X-ray crystallography is introduced in chapter one, followed by a discussion on modes of distortion peri-substituted naphthalene derivatives can undergo, in chapter two. In chapter three, compounds having non-bonded -SPh and -EPh (E = S, Se, or Te) peri-substituents are compared. These similar compounds react differently when oxidized with bromine. The oxidation products are used to discuss a recently proposed mechanism and a more specific mechanism is suggested. In chapter four, a one-pot synthesis for naphtho[1,8-c,d]-1,2-diselenole (Se₂naph) is reported. Substituents were added to Se₂naph to form two new naphthalene compounds. The substituents are found to distort the Se-Se bond and influence packing. In chapter five, several diselenium-containing compounds are used as ligands in platinum(II)-bisdiphosphine complexes. The preference for platinum(II) to stay square planar dictates the geometry around the metal center, not the rigidity of the naphthalene backbone. Chapter six introduces (8-phenylsulfanylnaphth-1-yl)diphenylphosphine, a peri-substituted naphthalene containing -SPh and -PPh₂ substituents, and several derivatives. This ligand is used in a variety of complexes containing platinum(II), ruthenium(II), and copper(I) metal halides, whose coordination geometries are discussed in chapter 7. The naphthalene-based ligands in Cu(I) and Ru(II) seem to determine the geometry around the metal, whereas the metal center d-orbitals dominate in the Pt(II) examples. Chapters eight and nine deviate from the naphthalene theme. In chapter eight, X-ray analysis of sulfoxide compounds is used to discuss the structural environment around the sulfur. Various intra- and inter-molecular interactions were discovered in crystal packing. Finally, chapter 9 uses STANDARD (St ANDrews Automated Robotic Diffractometer) to statistically analyze numerous E₂Ph₂ (E = S, Se, or Te) crystals to determine chirality. It is intriguing that Te₂Ph₂ shows a preference for one enantiomer over the other.

Synthesis, adsorption and catalysis of large pore metal phosphonates

Pearce, Gordon M. — Tue, 01 Jun 2010 00:00:00 GMT

Abstract: The synthesis and properties of metal phosphonates prepared using piperazine-based bisphosphonic acids have been investigated. The ligands N,N’-piperazinebis(methylenephosphonic acid) (H₄L), and the 2-methyl (H₄L-Me) and 2,5-dimethyl (H₄L 2,5-diMe) derivatives have been prepared using a modified Mannich reaction. Hydrothermal reaction of gels prepared from metal (II) acetates and the bisphosphonic acids results in the synthesis of four structures: STA-12, Ni VSB-5, Co H₂L.H₂O and Mg H₂L. STA-12, synthesised by reaction of Mn, Fe, Co or Ni acetate with H₄L or H₄L-Me, has been investigated further. STA-12 crystallises in the space group R⁻₃, and Ni STA-12 is the most crystalline version. Its structure was solved from synchrotron data (a = b = 27.8342(1) Å, c = 6.2421(3) Å, α = β = 90°, γ = 120°), and it has large 10 Å hexagonal shaped pores. Helical chains of Ni octahedra are coordinated by the ligands, resulting in phosphonate tetrahedra pointing towards the pore space. Water is present, both coordinated to the Ni²⁺ cations and physically adsorbed in the pores. Mixed metal structures based on Ni STA-12, where some Ni is replaced in the gel by another divalent metal (Mg, Mn, Fe or Co) can also be synthesised. Dehydration of STA-12 results in two types of behaviour, depending on the metal present. Rhombohedral symmetry is retained on dehydration of Mn and Fe STA-12, the a cell parameter decreasing compared to the as-prepared structures by 2.42 Å and 1.64 Å respectively. Structure solution of dehydrated Mn STA-12 indicates changes in the torsion angles of the piperazine ring bring the inorganic chains closer together. Fe and Mn STA-12 do not adsorb N₂, which is thought to be due to the formation of an amorphous surface layer. Dehydration of Ni and Co STA-12 causes crystallographic distortion. Three phases were isolated for Ni STA-12: removal of physically adsorbed water results in retention of rhombohedral symmetry, while dehydration at 323 K removes some coordinated water forming a triclinic structure. A fully dehydrated structure (dehydrated at 423 K) was solved from synchrotron data (a = 6.03475(5) Å, b = 14.9156(2) Å, c = 16.1572(7) Å, α = 112.5721(7)°, β = 95.7025(11)°, γ = 96.4950(11)°). The dehydration mechanism, followed by UV-vis and Infra-red spectroscopy, involves removal of water from the Ni²⁺ cations and full coordination of two out of three of the phosphonate tetrahedra forming three crystallographically distinct Ni and P atoms. No structural distortion takes place on dehydration of Ni and Co STA-12 prepared using the methylated bisphosphonate, and the solids give a higher N₂ uptake as a result. Dehydrated Ni and Co STA-12 were tested for adsorption performance for fuel related gases and probe molecules. Investigations were undertaken at low temperature with H₂, CO and CO₂, and ambient temperature with CO₂, CH₄, CH₃CN, CH₃OH and large hydrocarbons. Due to the presence of lower crystallinity, Co STA-12 has an inferior adsorption performance to Ni STA-12, although it has similar adsorption enthalpies for CO₂ at ambient temperature (-30 to -35 kJ mol⁻¹). Ni STA-12 adsorbs similar amounts of CO₂ and N₂ at low temperature, indicating the adsorption mechanisms are similar. Also, it adsorbs 10 × more CO₂ than CH₄ at low pressure, meaning it could be used for separation applications. Ni STA-12 adsorbs 2 mmol g⁻¹ H₂ with an enthalpy of -7.5 kJ mol⁻¹, the uptake being due to adsorption on only one-third of the Ni²⁺ cations. The uptake for CO is 6 mmol g⁻¹, with adsorption enthalpies ranging from -24 to -14 kJ mol⁻¹. This uptake is due to adsorption on all the Ni²⁺, meaning the adsorption enthalpies are high enough to allow the structure to relax. This is also observed for adsorption of CH₃CN and CH₃OH, where there is a return to rhombohedral symmetry after uptake. The adsorption sites in dehydrated Ni and Co STA-12 were investigated via Infra-red spectroscopic analysis of adsorbed probe molecules (H₂, CO, CO₂, CH₃CN and CH₃OH). The results indicate the adsorption sites at both low and ambient temperature are the metal cations and the P=O groups. The metal cation sites are also characterised as Lewis acids with reasonable strength. STA-12 was shown to have acidic activity for the liquid phase selective oxidations of 1-hexene and cyclohexene, although there is evidence active sites are coordinated by products and/or solvents during the reaction. STA-12 also demonstrates basic activity for the Knoevenagel condensation of ethyl cyanoacetate and benzaldehyde. Modification of STA-12 by adsorption of diamine molecules causes a slight increase in the basicity, and the highest conversions are where water and diamine molecules are both present.

Structural studies of ionic liquids and ionothermally-prepared materials

Byrne, Peter Joseph — Thu, 01 Jan 2009 00:00:00 GMT

Abstract: The aim of this thesis was to examine materials using high resolution X-ray diffraction techniques. Initial work involved the synthesis of various metal phosphates to investigate their suitability for charge density work. Many of these were discovered to be of insufficient quality for further study. Much of the phosphate synthesis work performed at the moment utilises an ionic liquid both as a solvent and structure directing agent which dictates the topology of the structure due to its size and charge density. As such the ionic liquid 1-ethyl-3-methylimidazolium hexafluorophosphate used in the synthesis process was examined with high resolution X-ray diffraction as it was possible to produce large pure crystals which could be examined further. A high resolution data set was also collected from the metal organic framework SIMOF-1 which produced a preliminary multipole model however further data collections are required to improve the quality of the model. A multi-technique investigation involving X-ray diffraction, solid state NMR and first principles calculations was carried out on the aluminophosphate material AlPO₄-15. A synchrotron X-ray single crystal diffraction study was carried out on the same sample as that used in solid state NMR studies. The model from the single crystal study, together with a model from a literature high resolution study of the same material, were used as starting points for the first-principles calculations of the NMR parameters. This enabled the ³¹P and ²⁷Al NMR spectra to be unambiguously assigned and all the NMR parameters calculated agreed well with the experimental spectra even without relaxing the X-ray derived structural models. Highlighting that as long as a good data set has been collected in the first place the atomic positions would not change too drastically. Other aspects of this thesis involved investigations into other ionothermally prepared systems such as the use of different phosphonate sources to provide functionality to the materials. This work resulted in some interesting findings such as the ionic liquid breaking down and being incorporated into the framework via the metal. Many of the structures produced were of a layered nature however a molecular structure was also synthesised which is unlike the vast majority of hydrothermally prepared phosphonates, which are layered. The negligible vapour pressure provided by the ionic liquid has enabled synthesis reactions to be investigated with glass vessels on an energy dispersive beam line. This work highlighted how it is possible to study the synthesis process in-situ and compare microwave assisted reactions against a conventional heating method, the results indicate that two different types of reactions are occurring resulting in different intermediates which is due to the way the reagents are heated. The microwave assisted reactions also result in larger purer crystals which highlights the importance of the method in materials synthesis. The use of a specially designed environmental gas cell was used to investigate the adsorption properties of the metal organic framework CPO-27-Co in-situ. Using the cell it was possible to locate sulfur dioxide physisorbed and chemisorbed sites with in the framework which could be removed by the application of a vacuum and heat. It was also possible to locate the chemisorbed sites for nitric oxide within the metal organic framework however due to the low scattering factor and disorder from the gas it was not possible to locate the physisorbed sites.

Mechanisms of silicate polymerisation, carbohydrate epimerisation and metalloprotease inhibition

Kowatz, Thomas — Mon, 30 Nov 2009 00:00:00 GMT

Abstract: In biotechnology and drug delivery silica materials are of interest but the controlled generation of silicic acid is difficult. To get more insight into the molecular mechanisms that control biosilification, it is important to study the proteins involved in this process. The sponge protein silicatein α synthesises part of the axial filament in the spicules which in situ polymerises silicic acid. It has been demonstrated that the polymerisation of siloxanes such as for example tetraethoxysilane (TEOS) can be carried out by both wild type and recombinant silicatein α. Unfortunately, it has not been possible yet to get reasonable amounts of wild type or recombinant silicatein α to perform biophysical studies. The human cysteine protease cathepsin L has almost 50 % identical residues with silicatein α. To get more insight into the mechanism of silica polymerisation, cathepsin L mutants were generated by our collaborators. Those mutants show sequence features and activity specific for silicatein α. The X-ray structure of one of those mutants (mutant 4SER) to 1.5 Å has allowed us to propose a new chemical mechanism for the catalysis of silicic acid polymerisation. ADP-β-D-glycero-D-mannoheptose and ADP-β-L-glycero-D-mannoheptose are interconverted by the SDR-enzyme ADP-β-L-glycero-D-mannoheptose 6-epimerase (AGME). This epimerisation reaction is the final reaction in the biosynthetic route of the precursor of heptose. Heptose is a part of the inner core of the lipopolysaccharide in Gram-negative bacteria. In mutants which do not have heptose, nonpolar compounds can penetrate more easily through the outer membrane. These mutants also show less pathogenicity. As a consequence the lipopolysaccharide biosynthetic pathway represents an interesting target for antimicrobial compounds. The crystal structure of AGME in complex with ADP-α-glucose has already been solved. From this structure a catalytic mechanism for this enzyme has been proposed with Tyr140 and Lys178 operating as acid/base residues. The disordered nature of the nucleotide sugar’s glucose moiety in the previous structure due to the wrong configuration of the sugar has hindered assignment of a mechanism. The determination of the X-ray structure of AGME Y140F in complex with a substrate in the β-manno configuration (ADP-β-mannose) to 2.4 Å resolution has given new insight into the mechanism of this SDR enzyme. A mechanism is proposed with only Tyr140 operating as catalytic acid/base. Initially it was thought that MMP-3 participates in the synovitis cascade. Glycoproteins, several parts of the ECM such as fibronectin and laminin and also collagens and procollagens are targets of this matrixin. Furthermore MMP-3 can undergo autocatalysis and is also able to cleave a range of other members of the matrixin family. Matrixins also play an important role in diseases such as cancer, rheumatoid arthritis and osteoporosis. This makes them targets for inhibitor design. Many structures of matrix metalloproteinases, such as stromelysin-1, in complex with various inhibitors have already been solved. The structures of the catalytic domain of MMP-3 in complex with two nonpeptide inhibitors are discussed.

Large pore mesoporous silicas for application in protein adsorption, enzyme immobilisation and drug delivery

Ritchie, Lyndsey K. — Fri, 26 Jun 2009 00:00:00 GMT

Abstract: A range of mesoporous materials based on SBA-15, KIT-6 and FDU-12 have been prepared using neutral block copolymers Pluronic P123 and F127 and characterised using methods including electron microscopy and nitrogen adsorption. Typically the materials have a hexagonal (p6mm) or cubic (Fm3m and Ia-3d) symmetry and pore geometry and are rendered porous by either calcination or solvent extraction. Organic functional groups were incorporated into the silica walls of the materials by co-condensation in the form of propyl thiols and additives in the form of alkanes were added to control pore size and geometry. The effects of temperature, additives, organic functionalisation, synthesis time and sol-gel composition were investigated and the resulting materials were tested as supports for protein adsorption, enzyme immobilisation, and drug delivery. Two FDU-12 materials of differing entrance and cavity sizes were used to adsorb a range of proteins with molecular weight 17 to 160 kDa to determine if there was a size exclusion effect. It was seen that the larger pore material was able to adsorb proteins of a larger size (molecular weight 105 kDa) and an exclusion effect was observed when the dimension of the proteins became too great (larger than 130 kDa). There was no clear trend for the smaller pore material where each protein was adsorbed to some extent by the material but apart from the smallest protein, myoglobin, mainly on the surface and not within the pores. The adsorption of the lipase B from Candida Antartica, CALB, was studied on a range of mesoporous supports with their templates removed by either calcination or extraction. The effect of pore size and functionalisation was investigated in terms of maximum loading and rate of loading. By functionalising the KIT-6 material the maximum loading of CALB was reduced from 45.5 to 32 mg/g whereas functionalising the FDU-12 material increased the maximum from 33 to 42.5 mg/g. The activity of the immobilised CALB was measured by enantioselective transesterification of (R)-1-phenylethanol in methyltetrabutyl ether (MTBE). The effect of loading, surface functionalisation and reusability in organic media were investigated. Functionalisation with propyl thiol was seen to increase the rate of conversion after 30 minutes for both KIT-6 and FDU-12 materials. Selected FDU-12 and KIT-6 materials with window sizes from 6 to 12 nm and with and without functionalisation were used to carry out a drug release study using Bovine serum albumin (BSA). BSA was loaded onto the material and the uptake quantified using nitrogen adsorption, elemental analysis, and thermogravimetric analysis. The release of BSA into simulated body fluid at 37 ºC was measured using HPLC. Functionalisation was seen to have little effect. The type of cubic morphology controlled the rate at which the BSA was released. The KIT-6 3D channel material exhibited a burst release initially followed by a steady release of BSA whereas the mesocage FDU-12 material had a slower and more linear release profile, closer to that desired.

The preparation and testing of novel biodegradable surfactants using poly(lactic acid) as the backbone, by a one-step ring opening polymerisation reaction

Hill, Gavin T.H. — Mon, 01 Jun 2009 00:00:00 GMT

Polyhedral oligomeric silsesquioxanes in catalysis and photoluminescence applications

Vautravers, Nicolas R. — Mon, 01 Jun 2009 00:00:00 GMT

Abstract: Cubic Polyhedral Oligomeric SilSesquioxanes (POSS) of general formula Si₈O₁₂R₈ (R = alkenyl, alkoxy, aryl, hydrogen...) have found applications in various fields ranging from biology to chemistry. Besides the advantage of presenting the characteristic dendritic globular shape at low generation, these three-dimensional molecules, easily modified by organic or inorganic reactions, quickly exhibit multiple end groups at their periphery, thus featuring attractive properties in catalysis and photoluminescence applications. Various dendritic POSS containing diphenylphosphine moieties at their periphery have been used in the methoxycarbonylation of ethene. Those with a -CH₂CH₂- spacer between the silicon and the phosphorus atoms (G0-8ethylPPh₂ and G1-16ethylPPh₂) only produce methyl propanoate whilst a similar dendrimer with a -CH₂- spacer between Si and P (G1-16methylPPh₂) gives only copolymer. The effect of the molecular architecture is discussed in comparison with the selectivities observed when using small molecule analogues. A wide range of non dendritic monodentate phosphines has also been studied in this reaction showing that low steric bulk and high electron density favours polyketone formation. The poorly active, monodentate SemiEsphos phosphine has been turned into an active ligand for rhodium catalysed vinyl acetate hydroformylation by attachment to the periphery of a Polyhedral Oligomeric Silsesquioxane. Whilst some of these dendritic ligands have shown activity, others precipitated upon mixing with the rhodium precursor. Modelling studies correlating the experimental facts have shown that the former are more compact and rigid in comparison to the latter, which are more flexible and hence more prone to monodentate binding to rhodium and cross-linking. Grubbs cross metathesis has been used to functionalize octavinylsilsesquioxane with fluorescent vinylbiphenyl modified chromophores to design new hybrid organic-inorganic nanomaterials. Those macromolecules have been characterized by NMR, microanalyses, MALDI-TOF mass spectrometry and photoluminescence. This last method was shown to be an interesting tool in the analysis of the purity of the cube derivatives. Reduction of the peripheral 4`-vinylbiphenyl-3,5-dicarbaldehyde groups on a Polyhedral Oligomeric Silsesquioxane (POSS) with NaBH₄ or LiAlH₄ activates the fluorescence of this macromolecule by turning the aldehydic functions into primary alcohols providing novel optical sensors for reducing environments.

In vitro studies of the enzymes involved in fluorometabolite biosynthesis in Streptomyces cattleya

Cross, Stuart M — Fri, 26 Jun 2009 00:00:00 GMT

Abstract: Enzymatic fluorination of natural products is extremely rare. Of the 4000 halogenated natural products identified, only 13 possess a fluorine atom. The C-F bond forming enzyme from the soil bacterium, Streptomyces cattleya, remains the only native enzyme to be identified that is capable of such biochemistry. It generates 5’-fluoro-5-deoxyadenosine (5‘-FDA) from S-adenosyl-L-methionine (SAM) and F-. The “fluorinase” is the first committed step toward the biosynthesis of the two fluorometabolites, 4-fluorothreonine and fluoroacetate, via the common intermediate, fluoroacetaldehyde (FAld). The enzymatic steps responsible for the conversion of 5’-FDA to the fluorometabolites remained to be fully characterised when this project began. Previously, a purine nucleoside phosphorylase was identified that was capable of generating 5-fluorodeoxyribose-1-phosphate (5-FDRP) from 5’-FDA. 5-FDRP is subsequently isomerised to 5-fluorodeoxyribulose-1-phosphate (5-FDRulP) by an aldose-ketose isomerase enzyme. Chapter 2 describes the identification of the isomerase gene from the genomic DNA of S. cattleya and the corresponding protein product was capable of generating 5-FDRulP from 5-FDRP. The next intermediate, FAld, is generated from 5-FDRulP by a fuculose aldolase. Attempts to identify the aldolase gene from S. cattleya were unsuccessful, however a putative fuculose aldolase from Streptomyces coelicolor was isolated that could generate FAld from 5-FDRulP, which is described in Chapter 3. Following the identification and over expression of a PLP-dependant transaldolase, which generates 4-fluorothreonine (4-FT) from FAld and L-threonine in S. cattleya, Chapter 4 details the successful in vitro reconstitution of fluorometabolite biosynthesis using five over- expressed enzymes. In Chapter 5, attempts to develop a novel assay for fluorinase activity was explored. The colorimetric detection of L-methionine produced by the fluorinase in a coupled L-amino acid oxidase and horseradish peroxidase assay, leading to the oxidation of a dye substance. This was carried out with interest in developing a high-throughput assay for fluorinase mutants, generated by random mutagenesis, in order to identify those with increased activity. In the event, it proved unsuccessful.

Doped alkaline earth (nitride) hydrides

Verbraeken, Maarten Christiaan — Fri, 26 Jun 2009 00:00:00 GMT

Abstract: The work in this thesis relates to the preparation and structural and electrical characterisation of calcium and strontium hydrides, imides and nitride hydrides. Conventional solid state methods in controlled atmospheres were used to synthesise these materials. High temperature neutron diffraction, thermal analysis and conductivity studies performed on calcium and strontium hydride suggest an order – disorder transition in these materials at 350 – 450°C. Disordering is believed to involve rapid exchange of hydride ions across two crystallographic sites. This manifests itself in a lowering of the activation energy for bulk hydride ion conduction. The hydride ion conduction is good in these undoped materials: σ[total]subscript = 0.01 S/cm for CaH₂ at 1000K; for SrH₂, σ[total]subscript = 0.01 S/cm at 830K. Doping of SrH₂ with NaH causes a significant increase in the low temperature conductivity, due to presence of extrinsic defects. The high temperature conductivity is negatively affected by NaH doping. Calcium nitride hydride (Ca₂NH) was obtained as a single phase material by reacting either calcium metal or calcium hydride (CaH₂) in an argon atmosphere containing 5 – 7% H₂ and 1 – 7% N₂. Imide ions substituting for hydride and nitride ions constitute a major chemical defect in this material. Long range ordering of the nitride and hydride ions occurs, giving rise to a double cubic crystal symmetry. This order breaks down at 600 – 650°C. Applying the same reaction conditions to strontium metal results in a mixed phase of strontium nitride hydride and imide. No long range order in the nitride hydride phase could be observed. Doping Ca₂NH with lithium hydride (LiH) causes the appearance of a second calcium imide phase, whereas doping with sodium hydride (NaH) increases the amount of imide ions as a defect in the nitride hydride structure, thereby decreasing the long range ordering of nitride and hydride ions.

The influence of the C-N⁺ ----- F-C charge dipole interaction in fluoro organic chemistry

Gooseman, Natalie Elizabeth Jane — Wed, 25 Jun 2008 00:00:00 GMT

Abstract: Chapter 1 introduces the discovery of elemental fluorine by H. Moissan and some uses of inorganic fluoride. Organo fluoro compounds and their place in pharmaceuticals and agrochemicals are also introduced. The general properties of fluorine and the C-F bond are discussed as well as conformational influences such as the fluorine gauche effect. Chapter 2 describes the C-N⁺------F-C charge dipole interactions within protonated amines and explains the influence of a β fluorine on the conformation on various crystalline structures. A number of systems are synthesised which contain this charge dipole interaction, such as four, five and eight membered aza heterocycles. It was demonstrated that these provided a N⁺-C-C-F gauche torsion angle. This electrostatic effect was also observed in the non-protonated N-ethylpyridinium cations possessing a fluorine β to the charged nitrogen. This clearly showed that hydrogen bonding is not playing a part in the observed N⁺-C-C-F gauche interactions and that it is a purely electrostatic effect. Chapter 3 discusses the effort to explore the C-O⁺-------F-C charge dipole interaction and the synthetic approaches that were taken towards candidate substances. However in the event a Grignard reaction on a fluoro cyclohexanone was found to provide an unexpected product where rearrangement followed by fluorine elimination had occurred. Chapter 4 details the experimental procedures for the compounds synthesised in this thesis and an Appendix outlines the detail of 24 crystal structures that were solved during this research.

The synthesis of medium-sized ring containing libraries using oxidative fragmentation and rearrangement strategies

Jones, Alan M. — Fri, 26 Jun 2009 00:00:00 GMT

Abstract: This thesis describes the development of a synthetic route that encodes a library of compounds containing medium-sized ring systems, with particular emphasis on the use of oxidative fragmentation and rearrangement strategies. Chapter 1 introduces diversity oriented synthesis (DOS) with particular emphasis on medium-sized ring synthesis and fragmentation/rearrangement protocols to achieve diversity. A more detailed discussion of oxidative fragmentation and rearrangement methods is also presented. Chapter 2 describes strategies for the synthesis of a collection of heterocyclic compounds known as diazabenz[e]aceanthrylenes. The scope of the reaction was explored as a function of a range of substituents and of the ring size of the N-aryl lactam that was used. Spectroscopic observations associated with this set of compounds are also discussed. Chapter 3 describes the development of an m-CPBA-mediated oxidative fragmentation of the diazabenz[e]aceanthrylenes. Analysis of the products from these reactions revealed the presence of atropisomerism due to restricted rotation about the N sp²-C(aryl) sp² bond. Chapter 4 focuses on a related example of oxidative fragmentation from the literature. A previously overlooked stereogenic axis is explored in this system using X-ray crystallographic analysis and variable temperature ¹H NMR spectroscopy. Reinterpretation of the reported mechanism-probing experiment led to the isolation of an alternative isomeric product and an improved interpretation for the reaction outcome is presented. Variable temperature ¹H NMR spectroscopic experiments revealed the energy barrier to racemisation in the medium-sized ring-containing analogues and based on this data the mode of ring inversion is discussed. Chapter 5 describes three rearrangements of the medium-sized ring system created in Chapter 3 including the formation of an azepinoindole ring structure, a Favorskii reaction and spiro-oxindole synthesis. A rationalisation for these reaction outcomes is included along with experimental support of mechanistic proposals. The generality and scope of the reactions are demonstrated including a nucleophile screen. Chapter 6 describes the synthesis of a library of 69 compounds consisting of examples of the core structures described in Chapters 2, 3 and 5. A discussion of the selection process and adaption of the protocol to parallel synthesis is presented. This chapter concludes with preliminary screening of the library against a variety of strains of yeasts and bacteria.

Self-assembled monolayers of thiolates as templates for micro/nano fabrication

Shen, Cai — Wed, 08 Oct 2008 00:00:00 GMT

Abstract: Self-assembled monolayers (SAMs) were investigated with regard to their application as templates to control processes down to the nanometre length scale. With applications of SAM for electrochemical nanotechnology in mind, the range of aspects studied comprises patterning on different length scales, behaviour of SAMs under the conditions of electrochemical metal deposition, and the influence of the head and tail groups on formation and structure of SAMs. On a micrometre scale, laser scanning lithography (LSL) was used to pattern SAM covered Au surfaces. With this technique, localized regions of a SAM are desorbed by scanning the focal spot of a laser beam. Thermal desorption occurs as a result of the high substrate temperature produced by the laser pulses. Patterns with line width as small as 0.9 µm were produced by LSL. It is demonstrated that SAM can not only be patterned by laser radiation but can also be rendered more passive as revealed by electrochemical metal deposition. Such blocking effect is explained by annealing of defects upon irradiation at the appropriate laser energy. This effect can block deposition of bulk copper particles, but does not prevent the underpotential deposition. Based on this passivation effect, large passivation areas can be created, which can be used as substrate for further nano/micro fabrication. The combination of SAM patterning and electrochemical metal deposition was also demonstrated to be an effective way to prepare superhydrophobic surfaces, exhibiting a contact angle of 165° (water droplet). Aiming for the generation of smaller structures, scanning tunneling microscopy (STM) is used as a tool to pattern SAMs. Several phenomena observed in STM based manipulation of SAMs are addressed. The first one is sweeping effect. Deposited metal particles on top of SAM and SAMs are swept by STM tip by choosing appropriate I/V parameters. The closer the tip (higher current, lower bias), the more effective it is. Molecularly resolved images confirm that after sweeping, the scanned area is still covered by SAM molecules. This is explained by diffusion. The sweeping process can be repeated, thus, resulting in a layer by layer etching. The second effect is field-induced desorption. Applying a positive voltage (2.5-5V), a SAM is damaged beneath the area of the tip. The damage depends not only on the bias applied, but also on the current setpoint right before applying the bias. The third effect is nanografting. Nanografting was observed that a SAM having a stronger assembling ability can replace the weaker one (matrix layer) in hexadecane solution by STM scanning under normal I/V parameters combination that are usually used for imaging. It is found that longer chain can replace the shorter chain thiol, alkanethiol can replace biphenyl thiol. This method can be applied to pattern SAM. Defects (punched holes) were created purposely on the SAMs covered Au surface and in situ STM was used to investigate the process of Under-Potential Deposition (UPD) and bulk metal deposition. Bulk metal deposition on punched holes depends on the size. Small scale patterning by punching is sufficient for applications based on UPD but not for bulk metal deposition. Several SAMs assembled on Au(111) surface (1-mercaptoundecanoic acid (MUA), Dodecyl Thiocyanate (C12SCN) and bis(pyrazol-1-yl)pyridine-substituted thiol (bpp-SH) and thiocyanate (bpp-SCN)) were investigated with the aim to expand the type of SAMs that can be used as template for further application, such as metal coordination. High quality thiolate monolayers formed by cleavage of the S-CN bond can be obtained on Au(111). Thus, organothiocyanates appear to be a promising alternative to thiols. Well-ordered MUA monolayers are formed in a few hours at the temperature range of 323-363 K by Physical Vapour Deposition (PVD). Self-assembled monolayers of bpp-SH and bpp-SCN on Au(111)/mica were studied with STM. Preparation conditions such as temperature, solvent, and contamination affect the formation of SAMs on Au(111) much more than other common thiols such as alkanethiols and biphenythiols.

The solvothermal synthesis of early transition metal fluorides

Aldous, David W. — Wed, 05 Mar 2008 00:00:00 GMT

Abstract: In this thesis, 60 crystal structures which have been synthesised by the solvothermal method are reported, with 57 of them representing novel materials. The remaining three materials have previously been reported but have been made by a new and milder method of synthesis. Ti, Zr, Hf, V, Nb, Ta and Mo have all been used to make fluoride or oxyfluoride materials at temperatures ranging from 60C to 200C. Both inorganic and organic moieties ("templates") have been used to direct the formation of the (oxy)fluoride materials, usually as an anionic species. These materials have then been studied for their magnetic properties, where relevant. Initially, 10 vanadium-based compounds were made at 100C using a range of templates. Through variations in water content, temperature and cation ratio, a further 19 compounds were synthesised. The inorganic species in these structures ranged from monomers, to dimers, tetramers and chains, to infinite 2D sheets. A family of vanadium compounds has been synthesised, with piperazine as a template, which shows an increase in covalent connectivity through the increase of the reaction temperature, with a decrease in oxidation state as a result. These materials are also interrelated through the use of a "Y" shaped motif in their structural composition. Through a change in cation content a novel trigonal chain compound (related to the structure of CsCrF₄) has been synthesised with piperazine which possibly shows strong geometric frustration. Vanadium oxyfluoride analogues of (VO)₂P₂O₇ have been made, which show interesting magnetic properties with a range of different templates, ranging from alkali metal cations to the bulky protonated template trans 1,2 bis (4-pyridyl) ethene. The best fits to the magnetic susceptibility data are obtained with an antiferromagnetic Heisenberg chain model. Nine molybdenum-based structures have also been synthesised, with five of the structures being made through changes in the temperature and cation ratio of the reactions. An example of this is the formation of tetrameric units with ammonium, through the condensation of monomers as a result of an increase in the reaction temperature. A further 22 structures have also been made with metals, M = Ti, Zr, Hf, Nb and Ta. These structures have a tendency to form isolated polyhedral units under the conditions studied in this work. Several examples of isolated [MF₆][superscript n-] and [MF₇][superscript n-] monomers are reported and also one example of a trans-connected [TiOF₄]²⁻ infinite chain structure.

Phosphine modified rhodium catalysts for the carbonylation of methanol

Lamb, Gareth W. — Wed, 25 Jun 2008 00:00:00 GMT

Abstract: The carbonylation of methanol to acetic acid is one of the most important applications in homogeneous catalysis. The first chapter comprises a review on the mechanistic studies into the catalytic cycle of the ‘Monsanto process’ and includes some of the most prominent studies into the use of phosphines in the rhodium-catalysed carbonylation of methanol. The second chapter of this thesis reports on an investigation into the application of rhodium complexes containing several C4 bridged diphosphines, namely BINAP, dppb, dppx and dcpb as catalysts for hydrogen tolerant methanol carbonylation. An investigation into the structure, reactivity and stability of pre-catalysts and catalyst resting states of these complexes has also been carried out. The origin of this hydrogen tolerance is explained based on the differing reactivities of the Rh acetyls with hydrogen gas, and by considering the structure of the complexes. In the third chapter I report on an investigation into how electronic properties and coordination mode affect the elimination of phosphonium salts from rhodium complexes. The stability of a range of monodentate, bidentate and tridentate rhodium-phosphine complexes was tested. I also report on the formation of a novel bidentate complex containing a partially quaternised TRIPHOS ligand and investigate the mechanism of formation using 13CH3I. Strong evidence is also presented supporting a dissociative mechanism as the means of phosphine loss from the rhodium centre. In the final chapters I report an investigation into the stability of rhodium-aminophosphine ligand complexes and into increasing the solubility of potential rhodium pre-catalysts through the use of amine-containing phosphine ligands.

Enzyme immobilisation and catalysis in ordered mesoporous silica

Smith, Graham Murray — Wed, 25 Jun 2008 00:00:00 GMT

Abstract: A range of mesoporous materials based on SBA-15 have been prepared and characterised. The materials were templated by neutral block copolymer P123, and typically have a hexagonal (p6mm) pore structure, with high surface areas and narrow pore size distributions. The removal of the surfactant template by calcination and solvent extraction has been investigated. The aqueous stability of this material, and the hydrolysis of the surface was studied. Organic functional groups were incorporated into the silica surface by co-condensation, or by post synthesis grafting. A range of functional groups were incorporated, including amine, carboxy, allyl and thiol groups. The pore size of the materials was controlled by the addition of trimethoxybenzene during synthesis, which significantly increased the pore size and uptake capacity of the materials. The adsorption of CALB by SBA-15 was investigated, with support materials extracted by calcination or solvent extraction. Rapid uptake at high loading was observed, with a maximum loading of 450 mg g-1 measured. The leaching of the enzyme from the support was investigated, and found to be high with unfunctionalised supports. The leaching from functionalised supports incorporating sulfur groups was significantly reduced. The activity of the immobilised CALB was measured by tributyrin hydrolysis in aqueous media, and by enantioselective transesterification of (R)-1-phenylethanol in organic media. The effect of surface functionalisation for reusability and thermal stability in aqueous systems was investigated. Preliminary studies of supported CALB for dynamic kinetic resolution were carried out, with an investigation of acidic zeolites and a mesoporous supported catalyst for 1-phenylethanol racemisation. The encapsulation of immobilised CALB was investigated, and the activity and reusability of these systems studied.

Design and synthesis of chemical probes for the protein kinase B PH domain

Nemeth, Joseph — Wed, 25 Jun 2008 00:00:00 GMT

Abstract: Phosphatidyl D-myo-inositol (3,4,5)-trisphosphate [PtdIns(3,4,5)P3] contributes to the activation of protein kinase B (PKB) by interacting with the PKB PH domain. PKB is known to be up-regulated in several cancer cell types. Compounds that can display selective inhibition of this kinase have promising chemotherapeutic potential, and inhibition of the PH domain of PKB represents a realistic means by which to achieve this. Analysis of the X-ray crystal structures of apo PKBαPH and PKBαPH bound to D-myo-inositol 1,3,4,5-tetrakisphosphate [InsP4, the inositol head group of PtdIns(3,4,5)P3] led to the design of PtdIns(3,4,5)P3 and InsP4 analogues as potential PKB PH domain inhibitors. The synthesis of PtdIns(3,4,5)P3 analogues modified at the C-4 position was investigated, but it was discovered that such compounds were prone to migration of the 1-position phosphate. Subsequently, a range of racemic InsP4 analogues, modified at the C-1 or C-4 position, were successfully synthesised. Advanced progress has also been made towards the synthesis of enantiomerically pure analogues of InsP4.

The synthesis of 5-substituted hydantoins

Murray, Ross George — Wed, 25 Jun 2008 00:00:00 GMT

Abstract: The Bucherer-Bergs reaction is a classical multi-component reaction that yields hydantoins, which can be hydrolysed to afford α-amino acids. Hydantoins have many uses in modern organic synthesis, and this moiety has been included in a number of therapeutic agents, which have a wide range of biological activities. Herein, we report a mild synthesis of 5- and 5,5-substituted hydantoins from α-aminonitriles using Hünig’s base and carbon dioxide. This reaction can be performed in excellent yields, using a variety of organic solvents and is applicable to a range of substrates. In an extension to the above methodology, a one-pot Lewis acid-catalysed synthesis of hydantoins from ketones has also been developed and optimised in organic media. This reaction can be performed in excellent yields and is suitable for the synthesis of 5- and 5,5-substituted hydantoins.

Scandium bearing open framework materials

Miller, Stuart R. — Mon, 17 Dec 2007 00:00:00 GMT

Abstract: Here I report the hydrothermal chemistry of scandium, examining the behavior of the Sc³⁺ cation in various systems, including phosphates, phosphites, phosphonates and carboxylates. In total, 27 different materials, 23 of which are novel, have been synthesised and their structures solved. Seven different scandium phosphate-based materials have been successfully synthesised using amines and alkali hydroxides as structure directing agents, producing chain, layer and framework materials. Thermal analysis of these materials indicated that they were not stable upon removal of the template, because there are hydrogen bonding networks between the template and free OH groups on the phosphate groups. Certain conditions lead to the crystallization of either kolbeckite, Sc(PO₄).2H₂O, or a langbeinite-type structure, (NH₄)₂Sc₂(HPO₄)(PO₄)₂, which are dense frameworks. Investigation of scandium phosphites leads to the formation of more thermally stable frameworks. Investigation of scandium phosphite-based materials using different structure directing agents yielded three framework phosphite materials and one layered phosphite / phosphate. The use of lithium hydroxide and ethylenediamine within scandium phosphite systems resulted in the crystallization of a gainesite type framework, (LiSc(HPO₃)₂)and (H₃N(CH₂)₂NH₃)₂Sc₄(HPO₃)₈, which distorts in order to accommodate the amine, but not the lithium cation. Decreasing the potential for the formation of hydrogen bonding networks in the phosphite systems led to the formation of framework structures, however these structures did not retain their crystalline integrity upon removal of the template. In order to impart structure directing properties upon scandium-based materials but avoid the formation of hydrogen bonding networks upon which the crystalline integrity is dependent, scandium phosphonates were investigated. Seven different scandium phosphonate materials have been synthesised, two of which have been solved from powder diffraction data, and one from a combination of powder diffraction data, molecular modeling and single crystal data. Synthesis of scandium phosphonate materials yielded two thermally stable, porous materials with reversible water adsorption properties, NaSc(CH₃PO₃)₂•H₂O and Sc₂(O₃PCH₂(NHC₅H₁₀NH)₋CH₂PO₃)₃4H₂O. The success of this approach led to the examination of scandium carboxylate metal organic framework materials. The incorporation of Sc³⁺ into microporous carboxylate frameworks yielded three aliphatic scandium carboxylates and six aromatic scandium carboxylates. The scandium analogue of MIL-53 shows potential for gas adsorption studies, as well as illustrating that scandium carboxylates can be isostructural to metal carboxylate materials already published. The scandium terephthalate, Sc₂(O₂CC₆H₄CO₂)₃, is a small pore framework material with an unprecedented structure type, the adsorption properties of which have been examined using a variety of different small gas molecules and hydrocarbons, including X-ray analysis of the structures whilst adsorbing different molecules. ⁴⁵Sc MAS NMR has been performed on the materials prepared pure and characterized in this thesis, in order to establish a library of chemical shifts for scandium in different framework environments.

Manganese titanium perovskites as anodes for solid oxide fuel cells

Ovalle, Alejandro — Thu, 21 Feb 2008 00:00:00 GMT

Abstract: A new family of perovskite titanates with formulae La4+nSr8-nTi12-nMnnO38 and La4Sr8Ti12-nMnnO38-δ have been investigated as potential fuel electrode materials for SOFCs. The series La4+nSr8-nTi12-nMnnO38 present layered domains within their structure. As such layers appear to have a large negative effect over the electrochemical properties only a few compounds have been characterised. The series La4Sr8Ti12-nMnnO38-δ present a rhombohedral (R-3c) unit cell at room temperature which becomes cubic when increasing the temperature up to 900°C both in air and in reducing conditions. The primitive volume correlates with the oxygen content for the reduced samples. TGA and magnetic studies have revealed that the Mn present is mainly as Mn⁺³. Preliminary HRTEM investigations have revealed that some crystallographic shears distributed randomly within a perovskite matrix remain in the structure, which implies that the oxygen overstoichiometry is compatible with rhombohedral distortions in the oxygen sublattice. Mn substitution does not have a large impact on the bulk conductivity of the phases studied, which remains close to the values observed in other related titanates, although the grain boundary contributions are largely improved. Relatively low polarisation resistances were observed under both hydrogen and methane conditions for the lowest n compounds of the series. The anodic overpotential for n=1 was fairly low to those reported in the literature for other materials and especially for titanate-based anodes, i.e. a value of 55mV at 0.5A/cm2, at 950°C, under wet hydrogen was obtained. Additionally, a value 72mV was obtained in the same conditions under methane. These values indicate that the use of Mn as dopant for perovskite-related titanates enhanced electrochemical performance of these anodes, especially at high temperatures.

New synthetic uses for chiral 1,3-dioxolan-4-ones

Power, Lynn A. — Wed, 25 Jun 2008 00:00:00 GMT

Abstract: The behaviour of chiral 1,3-dioxolan-4-ones, derived from reaction of mandelic and lactic acid with pivalaldehyde, as chiral acyl anion equivalents has been examined. Addition of the corresponding 5-anions to a substituted nitrostyrene and to butenolide was achieved and the structure and stereochemistry of the adducts established by X-ray crystallography. Fragmentation under flash vacuum pyrolysis (FVP) conditions occurred in the expected way (loss of Bu([superscript]t)CHO and CO) in the latter case, but in the former reductive cyclisation was used to generate functionalised lactams. An unexpected reaction of a dioxolanone anion with the dioxolanone to afford an aldol-like dimer was observed in one case. Attempts to extend the range of dioxolanones by using amino acid-derived α-hydroxy acids met with limited success. Only the 5-benzyl compound derived from phenylalanine was obtained in reasonable yield and an attempt to alkylate it led again to aldol-like dimerisation. Cycloaddition to the double bond of 2-t-butyl-5-methylene-1,3-dioxolan-4-one was used to gain access to a range of novel spiro bicyclic and polycyclic systems and fragmentation of these was expected to provide products resulting from a chiral ketene equivalent. While the epoxide derived from the cyclopentadiene Diels Alder adduct did behave in this way to give the chiral ketone in high e.e., the corresponding aziridine underwent unexpected isomerisation pointing to a stepwise fragmentation mechanism of possible general applicability in these systems. Adducts were also formed with tetracyclone and 1,3-diphenylisobenzofuran and an interesting pattern of exo/endo selectivity was observed in these cases. With tetrachlorothiophene dioxide the adduct again fragmented in an unexpected way to give tetrachlorobenzoic acid, providing further support for the intermediacy of an oxonium carboxylate species. 1,3-Dipolar cycloaddition to 2-t-butyl-5-methylene-1,3-dioxolan-4-one was achieved for the first time and a range of adducts containing novel spiro heterocyclic ring systems derived from nitrile oxides, nitrones and diazo compounds were obtained and characterised. The regiochemistry of addition as well as the relative and absolute stereochemistry was demonstrated by X-ray structures of three adducts. Upon pyrolysis some of these compounds unexpectedly lost Bu([superscript]t)CHO and CO2 to give carbene-derived products, including a β-lactam in one case. Cycloaddition reactions of the achiral 2,2-dimethyl-5-methylene-1,3-dioxolan-4-one were also briefly studied.

Nanomaterials for energy storage

Jiao, Feng — Tue, 01 Jan 2008 00:00:00 GMT

Abstract: The results presented in this thesis demonstrate the first synthesis of several nanostructured transition metal oxides and lithium containing transition metal oxides. Their uses in lithium-ion batteries and/or as magnetic materials have been investigated. The first example of two and three dimensional mesoporous Fe₂O₃ has been prepared by using the soft templating (surfactant) method. The materials have amorphous walls and exhibit superparamagnetic behaviour. By using a hard template route, a mesoporous α-Fe₂O₃ with highly crystalline walls has been synthesized. Its unique magnetic behaviour, distinct from bulk α-Fe₂O₃, nanoparticulate α-Fe₂O₃, and mesoporous Fe₂O₃ with disordered walls, has been demonstrated. The hard template method was also used to prepare nanowire and mesoporous Co₃O₄, β-MnO₂ and MnO₃ with crystalline walls. Their electrochemical properties as electrodes in Li-ion batteries have been investigated. Mesoporous β-MnO₂ can accommodate 0.9 Li/Mn in stark contrast to bulk β-MnO₂ which cannot accommodate Li. To prepare mesoporous materials which cannot be obtained directly by the hard template method, a post-templating route has been developed. Mesoporous Fe₃O₄, γ-Fe₂O₃, and Mn3O4 with ordered mesostructures and highly crystalline walls have been obtained by post-synthesis reduction/oxidation treatments. All the materials show unique magnetic properties compared with nanoparticulate and bulk materials. Also, the first example of lithium containing mesoporous material, LT-LiCoO₂, was synthesized by first preparing mesoporous Co₃O₄, then reacting this with LiOH to form LT-LiCoO₂, with retention of the ordered nanostructure. The nanostructured LT-LiCoO₂ compounds demonstrate superior performance compared with normal or nanoparticulate LT-LiCoO₂, when used as intercalation electrodes in lithium batteries. Finally, monodispersed Mn₃O₄ nanoparticles (diameter ~ 8 nm) with a core-shell structure (a highly crystalline Mn₃O₄ core encased in a thin MnO₂ shell) have been prepared for the first time. Ordered three-dimensional arrays form by spontaneous self-assembly. Magnetic measurements demonstrated that the self-assembled three-dimensional arrays exhibit spin-glass behaviour, rather than the anticipated superparamagnetic behaviour for isolated nanoparticles. Such behaviour is interpreted as arising from strong interactions between the core (crystallized Mn₃O₄) and shell (MnO₂).

Rearrangements in the indolo[2,3-b]quinoline system : a novel approach to the synthesis of perophoramidine and the the communesins

Voûte, Nicholas — Tue, 01 Jan 2008 00:00:00 GMT

Abstract: This thesis describes investigations directed towards developing a novel synthetic route to the natural products perophoramidine and the communesins, with particular emphasis placed on the formation of the two vicinal all-carbon quaternary centres contained in these molecules. Chapter 1 introduces perophoramidine and the communesin group of natural products and explains how they are related to the calycanthaceous alkaloids. The isolation of perophoramidine and the communesins is outlined and their biosynthesis is discussed. Specific structural features of these natural products are highlighted before established synthetic strategies are reviewed. Chapter 1 concludes by proposing a novel synthetic route for the synthesis of perophoramidine and the communesins that involves a Claisen rearrangement in the indolo[2,3-b]quinoline system as a key step. Chapter 2 describes model studies on the proposed Claisen rearrangement in an attempt to form a quaternary centre in the indolo[2,3-b]quinoline system. These initial studies did not result in the generation of the desired quaternary centre. However, a detailed understanding of the reactions that occur leads to the design of a new model substrate. Chapter 3 describes studies on the revised model system that result in the formation of the desired quaternary centre using a Claisen rearrangement. The differences between the two systems are discussed before an investigation into the scope of the rearrangement is described. Chapter 3 concludes by describing an investigation into a protecting group strategy that would by required with this synthetic route. Chapter 4 describes investigations into the formation of the second vicinal quaternary centre using a model system. The synthetic routes investigated lead to two separate methods for the formation of the desired quaternary centre. Chapter 5 describes investigations into the effect a C-10 substituent has on the Claisen rearrangement. Additionally, an asymmetric version of the Claisen rearrangement is examined. Chapter 5 culminates in the preparation of an intermediate relevant to an asymmetric synthesis of the communesins.

Mechanistic studies on quinolinate phosphoribosyltransferase

Catton, Gemma Rachel — Sun, 01 Jun 2008 00:00:00 GMT

Abstract: Quinolinate phosphoribosyltransferase (QPRTase, EC 2.4.2.19) is an intriguing enzyme which appears to catalyse two distinct chemical reactions; transfer of a phosphoribosyl moiety from 5-phosphoribosyl-1-pyrophosphate to the nitrogen of quinolinic acid and decarboxylation at the 2-position to give nicotinic acid mononucleotide. The chemical mechanism of QPRTase is not fully understood. In particular, enzymatic involvement in the decarboxylation step is yet to be conclusively proven. QPRTase is neurologically important as it degrades the potent neurotoxin, quinolinic acid, implicated in diseases such as Huntington’s disease and AIDS related dementia. Due to its neurological importance and unusual chemistry the mechanism of QPRTase is important. Described here is a mechanistic study on human brain QPRTase. Human brain QPRTase was successfully expressed in E. coli BL21 (DE3) from the pEHISTEV-QPRTase construct and the protein was efficiently purified by nickel affinity chromatography. The crystal structure was solved using multiwavelength methods to a resolution of 1.9 Å. Human brain QPRTase was found to adopt an energetically stable hexameric arrangement. The enzyme was also found to exist as a hexamer during gel filtration under physiological conditions. Kinetic studies allowed the measurement of the kinetic parameters for quinolinic acid. The data gave a Km of 13.4 ± 1.0 μM and a Vmax of 0.92 ± 0.01 μM min-1. There was no evidence for cooperative binding of quinolinic acid to the six subunits of the QPRTase hexamer. The enzyme showed maximum activity at approximately pH 6. The active site of human brain QPRTase is a deep pocket with a highly positive electrostatic surface composed of three arginine residues, two lysine residues and one histidine residue. Mutation of these residues resulted in either complete loss or significant reduction in enzymatic activity showing they are important for binding and/or catalysis. A possible mechanism involving QPRTase in the decarboxylation of quinolinic acid mononucleotide was proposed. A series of quinolinic acid analogues were synthesised and tested as inhibitors of QPRTase. The inhibition studies highlighted some key interactions in the active site.

New reactions under homogeneous conditions

Núñez Magro, Ángel Alberto — Mon, 01 Jan 2007 00:00:00 GMT

Abstract: BDTBPMB has been proven to be an essential ligand in carbonylation chemistry. Its two tert-butyl groups and wide bite angle give it the ideal characteristics for this kind of chemistry, and leads to high activity and selectivity with use of its complexes. During this work the group of reactions where this ligand has been proven to be active has been extended with two new protocols for hydroxycarbonylation and aminocarbonylation. In the hydroxycarbonylation process, a large variety of unsaturated compounds were studied. Dioxane was found to be the ideal solvent, due to its properties in terms of coordinability, and miscibility with water. Using this solvent as the medium, a BDTBPMB complex of palladium was found to be highly active and selective under mild conditions. Initial attempts to address the aminocarbonylation of alkenes catalysed by the Pd/BDTBPMB system did not give high activity. This problem was overcome by the addition of an arylalcohol. Under those conditions, high selectivity and conversion was obtained in a wide variety of amides. However, attempts to address the aminocarbonylation of alkenes with ammonia gas to generate primary amides did not result in any conversion. The generation of these primary amides was obtained with transamidation of N-phenylnonamides which can be prepared by aminocarbonylation. Amides have been successfully hydrogenated to amines catalysed by a Ru/Triphos system. This system has been proven to be highly active in this reaction. High selectivities have been obtained in the generation of secondary amine. However, initial results of the hydrogenation of primary amides resulted in no formation of primary amines. A careful analysis of the mechanism of the formation of various products from the hydrogenation of primary amides allows the selective formation of primary amines by the ruthenium/Triphos system in the presence of ammonia. The possibility of the generation of primary amides in situ from acids under hydrogenation conditions, giving primary amines was explored with high conversion and moderate selectivities.To complete this work, a system based on a palladium complex for the decarboxylation of benzoic acids was developed. Usually, the decarboxylation reactions catalysed by copper require high temperatures. However, palladium complexes of highly electron donating ligands such as BDTBPMB or P([superscript]tBu)₃ were found to be highly active under milder conditions. This catalytic system was proven to be active in desulfonation reactions giving high conversion.

Enhancing the conductivity of crystalline polymer electrolytes

Lilley, Scott J. — Fri, 30 Nov 2007 00:00:00 GMT

Abstract: The AsF6- anion, in the crystalline polymer electrolyte PEO6:LiAsF6, was replaced with the larger N(SO2CF3)2- anion. This produced an increase in the room temperature ionic conductivity of 1.5 orders of magnitude. It is believed that the enhancement is the result of the disruption of the electrostatic field around the lithium ions. The presence of the large and asymmetrical N(SO2CF3)2- ion creates a greater number of defects and thus enhances conductivity. These results demonstrate for the first time the enhancement lithium ion conductivity in a crystalline polymer electrolyte by isovalent doping. XF6- anions, in the crystalline polymer electrolyte system PEO6:LiXF6, were replaced by another anion of similar size and shape. A continuous solid solution was obtained for PEO6:(LiAsF6)1-x(LiSbF6)x. These results represent the first continuous solid solution demonstrated in the field of crystalline polymer electrolytes. They also show for the first time an enhancement of conductivity caused only by the size of the dopant anion. The enhancement is believed to originate from changes in the length of the crystal axis and changes in the potential landscape around the lithium ions. The structures of the glyme complexes monoglyme:LiAsF6, hexaglyme:LiAsF6, octaglyme:LiAsF6, undecaglyme:LiAsF6 and dodecaglyme:LiAsF6 have been solved. There structures are discussed and compared to that of PEO6:LiAsF6. The properties of these complexes together with those of diglyme:LiAsF6, triglyme:LiAsF6 and tetraglyme:LiAsF6 were investigated. Triglyme:LiAsF6 has been shown to demonstrate high ionic conductivity of 10-5.5 Scm-1 at 30oC as well as a high transport number of 0.8. These complexes demonstrate the control that crystal structure has over ionic conductivity. These complexes are neither ceramic nor polymeric. A number of the complexes show plastic crystal like solid-solid phase transitions.

New ruthenium catalysts for asymmetric hydrogenation

Diaz Valenzuela, Maria Belen — Thu, 01 Nov 2007 00:00:00 GMT

Abstract: A review on catalytic asymmetric hydrogenation of C=O double bonds is presented in the first chapter. Noyori’s pioneering research on ruthenium complexes containing both phosphine and diamine ligands using [i superscript]PrOH and [t superscript]BuOK is described, this system gave impressive highly chemeo-selectivity for C=O bonds and extremely high enantioselectivity for a range of acetophenone derivatives. Numerous groups have been inspired by Noyori’s catalyst of the type RuCl₂(chiraldiphosphine)(chiraldiamine), these systems often give excellent results for acetophenone. However, these catalysts have limitations, they are found to be either inactive or unselective for hydrogenation of tetralones, dialkylketones, bulky ketones, some heterocyclic ketones and imines prove difficult using this system. In this project, we are searching for a new catalyst for asymmetric hydrogenation of ketones that solve the difficult challenges faced when using Noyori’s [Ru(diphosphine)(diamine)Cl₂] catalysts system. Departing from Noyori’s type catalyst in the second chapter is described our effort to synthesise new diamines derived from amino acids and the synthesis of [Ru(diamine)(diphosphine)Cl₂] complexes. These catalysts are tested in asymmetric hydrgenation of ketones. In the next two chapters the finding of a new tridentate P^N^NH₂ type ligand is reported and the novel ruthenium complex containing the tridentate ligand has been synthesised and characterised by X-ray crystallography and been found to be active in the hydrogenation of a range of C=O and C=N double bonds, including the enantioselective hydrogenation of normally unreactive bulky ketones with up to 93 % ee. The last chapter explains the transfer hydrogenation activity for this new catalyst, involving a novel method of transfer hydrogenation reaction under microwave irradiation.

Characterisation of proton conducting oxide materials for use in reverse water gas shift catalysis and solid oxide fuel cells

De A. L. Viana, Hermenegildo — Thu, 02 Aug 2007 00:00:00 GMT

Abstract: This study concerned the preparation, characterisation and evaluation of different proton conductors for the Reverse Water Gas Shift Reaction (RWGS) and their evaluation as electrolytes for Solid Oxide Fuel Cells (SOFC) under H₂ and O₂. Materials with both catalytic and conductive properties are of a great interest, as their use in electrocatalytical systems may be very important. Sr₃CaZr₀.₅Ta₁.₅O₈.₇₅ (SCZT), BaCe₀.₉Y₀.₁O₂.₉₅ (BCY10) and Ba₃Ca₁.₁₈Nb₁.₈₂O₈.₇₃ (BCN18), were the initial materials in this study. Thermogravimetric analysis under different atmospheres (5%H₂/Ar, Ar, 5%CO₂, etc), were performed on SCZT and BCN18; with both materials being shown to be stable under reducing and oxidising conditions. Conductivity measurements by two terminal a.c. impedance were also conducted on SCZT and BCN18 under oxidising and reducing atmospheres. As found in literature, BCN18 showed mixed conductivity; with electronic conductivity at high temperatures and pure ionic conductivity below 550ºC, This behaviour was shown in chapter 3, where the change on conduction process was observed upon different gas feeds. Its maximum conductivity values for the different atmospheres were: 8.50x10⁻⁵ S/cm (Dry 5%H₂/Ar at 200ºC), 4.24x10⁻⁴ S/cm (Wet 5%H₂/Ar at 500ºC) and 4.48x10⁻³ S/cm (Air at 900ºC). SCZT proton conducting behaviour was also measured (wet and dry 5%H₂/Ar). Exhibiting an order of magnitude higher in total conductivity upon hydration of the gas feed (σdry=1.01x10⁻⁶ and σwet=1.07x10⁻⁵ at 450ºC). The doping of barium cerate with Zr and Zn by Tao and Irvine, lead to a more stable and easily sinterable BaCe₀.₅Zr₀.₃Y₀.₁₆Zn₀.₀₄O₃ (BCZYZ). Following this work, the introduction of ZnO as a sintering aid to SCZT and BCN18 resulted in Sr₃CaZr₀.₄Ta₁.₅Zn₀.₁O₈.₇₅ (SCZTZ), and Ba₃(Ca₁.₁₈Nb₁.₇₀Zn₀.₁₂)O₈.₅₅ (BCNZ); with higher final densities (above 90% dense). As with BCN18, BCNZ also exhibited mixed conductivity; with higher total conductivity values than BCN18. A maximum of total conductivity of 1.85x10⁻³ S/cm at 900ºC for BCNZ was measured against 6.99x10⁻⁴ S/cm at 900ºC for BCN18. A change in conductivity process was observed when using air or wet 5%H₂/Ar, achieving a maximum of 3.85x10⁻⁴ S/cm at 400ºC when under wet hydrogen. All materials (as powders) have shown catalytic activity for the reverse water gas shift (RWGS) reaction, with the lowest conversion temperature onset at 400ºC for SCZT and a maximum conversion of CO₂ to CO of 42%, with circa 0.52 and 0.59 mmol/s.m² of CO produced at 900ºC by BCN18 and BCZYZ, respectively. No relation between mechanisms for the RWGS and σ for these materials were expected below 10% conversion, as no correlation was found between their activation energies. BCY10 as shown a partial decomposition when exposed to the RWGS reaction, for what BCZYZ After fuel cell testing under H₂ and O₂ both SCZTZ and BCNZ showed mixed conductivity. SCZTZ under different hydrogen partial pressures, exhibited a behaviour close to a pure proton conductor, however, when exposed to both reducing and oxidising conditions, its behaviour did not follow the theoretical values. On the other hand, BCNZ behaves as a pure ionic conductor below 500ºC; with increasing influence of the electronic conductivity on temperature increase. However, as seen for BCNZ conductivity data from 2 terminal a.c. impedance, below 650ºC wet 5%H₂ exhibited the highest conductivity values. This, in additions to the pure ionic conductive behaviour below 400ºC (from the effective ionic transport number), suggests that BCNZ becomes closer to a pure proton conductor with temperature decrease.

The Ba-Pb-O system and its potential as a solid oxide fuel cell (SOFC) cathode material

Sharp, Matthew David — Fri, 30 Nov 2007 00:00:00 GMT

Abstract: The Ba-Pb-O system was investigated as a possible cathode material in a solid oxide fuel cell (SOFC). Metallic oxides with a perovskite structure form a large family that displays a wide variety of properties such as superconductivity, ferroelectricity and catalysis. Barium plumbates have been studied extensively in recent years because of such interesting properties. BaPbO₃ is known to exhibit room temperature metallic conductivity, due to an overlap (~2 eV) of the O2p nonbonding band with the Pb-O spσ antibonding band at the Fermi level. Another phase in the Ba-Pb-O system, Ba₂PbO₄, is known to adopt the K₂NiF₄ structure and behaves as a large-gap semiconductor (valence bands are separated by a ~1.7 eV semiconductor gap). The compounds BaPbO₃ and Ba₂PbO₄ have been prepared with a view to evaluating them as fuel cell materials, in terms of compatibility with common electrolytes such as YSZ and CGO, stability under fuel cell operating conditions, and overall performance. The effect of substituting Y and Sc in the structures has also been studied using a combination of XRD and A. C. impedance spectroscopy. It was found that BaPbO₃ offers good performance compared with La₀.₈Sr₀.₂MnO₃-x (LSM) and La₀.₆Ca₀.₄MnO₃-x (LCM) in the lower temperature region for SOFC operation (700 – 800 K), giving an activation energy of 0.93 eV. The introduction of Y to the BaPbO₃ structure reduced performance. Electrode/electrolyte compatibility studies revealed BaPbO₃ and YSZ or CGO to be unstable to 800 °C – the formation of cerate or zirconate phases was observed. No reaction was observed at 700 °C. Therefore CGO was considered as an electrolyte for use with BaPbO₃ since CGO offers good performance at temperatures where the electrode is stable. In order to avoid high sintering temperatures for electrode adhesion, BaPbO₃ precursors were impregnated into porous CGO, before firing at 700 °C, thus creating a composite cathode.

Structure direction in the formation of zeolitic materials

Warrender, Stewart James — Mon, 01 Jan 2007 00:00:00 GMT

Abstract: Structure direction in the formation of zeolitic materials has been investigated through the parallel approaches of structural and synthesis studies. The structures of gallosilicates TNU-6 and TNU-7 have been solved from powder X-ray diffraction. TNU-6 (P6₃, a = b = 10.5078(1)Å, c = 8.5277(1)Å) is found to possess a stuffed tridymite-like structure isostructural with BaFeGaO₄. Evidence from electron diffraction, single crystal and high-resolution powder X-ray diffraction suggests the presence of a √3a superstructure, analogous to the related KAlGeO₄ phase, arising from a subtle variation in tilt of tetrahedral units. The structure of TNU-7 consists of an ordered 1:1 intergrowth of alternating sheets of mazzite and mordenite (Pmmn, a = 7.5721(1)Å, b = 17.0739(2)Å, c = 25.8438(5)Å). The crystallisation field of TNU-7 is found to lie between those of mazzite and mordenite, suggesting that this is an example of a ‘boundary phase’ - phase selectivity being governed strongly by the presence and quantity of Ga in the synthesis gel. The distribution of extra-framework Na⁺ cations in the as-made material, and Cs⁺ and Sr²⁺ in ion-exchanged samples, suggests a higher extra-framework charge per T-site associated with the mazzite region of the structure, indicating the possible existence of compositional zoning, consistent with the preference to form mazzite at high Ga gel-content. The structures and synthesis conditions for both TNU-6 and TNU-7 suggests a cooperative effect between Ga and extra-framework species in directing the formation of these phases. The structure of the novel aluminosilicate TNU-9 has been confirmed by energy minimisation and powder neutron diffraction studies (C2/m, a = 28.177(2)Å, b = 20.030(1)Å, c = 19.464(1)Å, β = 92.311(4)º ). Monte Carlo-Simulated Annealing studies have been employed to investigate the favoured location of the 1,4-bis(N- methylpyrrolidinium)butane template molecule within the complex pore system. Remarkably, three (possibly four) different positions are assumed by the structure-directing agent, forming head-to-middle and head-to-head motifs between constituent framework aluminosilicate sheets. TNU-9 crystallises in a very narrow gel composition window suggesting a strong cooperative effect between organic and inorganic gel components. Structure direction of phosphate-based materials (aluminophosphates, magnesium aluminophosphates and silicoaluminophosphates) has been investigated through co-templating synthesis studies. In particular, the structure-directing activity of Cu²⁺ (and to a lesser extent Ni²⁺) complexes of the azamacrocyles cyclam and cyclen, and related derivatives, is investigated in the presence of additional amines (dipropylamine, diisopropylamine, tetraethylammonium hydroxide, diisopropylethylamine). Complexes of a selection of linear polyamines, and also cobalticinium are studied for comparison. Although added primarily as pH moderators, the additional amines are also found to influence the crystallisation and hence provide effective routes to the synthesis of transition metal-containing materials with potential catalytic application. The ‘strength’ of the structure-directing ability of the additional amines is found to vary depending on the identity of the primary structure-directing agent, with behaviour ranging from passive pH moderator to dominating structure-directing agent. The outcome of syntheses is also highly dependent on inorganic gel composition. Through appropriate combination of structure-directing agent and additional amine, mixed Cu²⁺/Ni²⁺-containing MgAPO and SAPO STA-6 (SAS) and STA-7 (SAV) materials have been synthesised for the first time, as well as a low Si form of SAPO STA-7 (with and without Cu²⁺). Also, the combination of cyclam, tetraethylammonium hydroxide and HF has been found to produce a SAPO analogue of STA-7 possessing silicate islands. In addition, transition metal-containing materials possessing the AEL, AFI, CHA, UT-6 and LEV topologies have also been synthesised via this approach. Elemental analysis, UV-Vis, ESR and NMR spectroscopy are employed to confirm the presence of the desired complex in selected samples, while X-ray diffraction and ESR spectroscopy are employed to investigate the environment of extra-framework transition metal species, post calcination, in MgAPO STA-6, SAPO STA-6 and STA-7, MgAPO-18, and MgAPO-5.

Magnetic Resonance Imaging (MRI) and electromechanical study of electro-active polymers for application in soft actuators

Naji, Leila — Mon, 01 Jan 2007 00:00:00 GMT

Abstract: It is more than a decade that Ionic Polymer-Metal Composites (IPMCs) have been known as an exciting class of smart materials and attracted growing worldwide attention. IPMCs are soft and flexible, and can generate large and reversible strains in response to electrical stimulus. Thus, they have potential applications in industrial and biomedical fields, as actuators. Before these applications can be realized , however, the performance of IPMCs must be understood and improved through improvement of component characteristics and of preparation methods. In general, the aim of this thesis is to gain a fundamental understanding of the chemical and structural factors that affect the electromechanical performance of IPMCs. To this end, a multi-technique investigation is applied to correlate the electrochemical and electromechanical behavior of IPMCs, during operation, with their chemistry, microstructure and nanostructure. Researchers have suggested several plausible mechanical and mathematical models to reveal that ion transport occurs within IPMCs and that it is an important factor in their actuation performance. However, there is still a need for further experimental studies to help refine our understanding of the actuation mechanism of these materials. In this work, the powerful, non-invasive and non-destructive technique of Magnetic Resonance Imaging (MRI) is employed to study the internal structure and water content distribution in Nafion membranes and also IPMCs. Moreover, MRI is also applied to image electrically-induced diffusion of ions with their associated water molecules in real time, in operating IPMC actuators. This forms the major part of this project and, to the best of our knowledge, it is the first recorded electrochemical experiment of this kind. The size and dimensions of IPMCs can affect their actuation performance. Thus, in this work, model IPMC actuators are prepared based on the available commercial Nafion membrane and fabricated cast Nafion membrane and their electromechanical behaviors are compared. The effect of parameters such as electrode composition and Nafion thickness on actuation behavior is also studied by measuring displacement and force generation of the IPMC actuators during actuation cycles. Simultaneous current and electrochemical measurements are made to correlate electrochemical processes with actuation behavior directly. Scanning electron microscopy (SEM) is also used to study the internal and surface structure of IPMCs.

Hydroformylation in fluorous biphasic media

Mathison, Clare R. — Wed, 20 Jun 2007 00:00:00 GMT

Abstract: The hydroformylation of oct-1-ene is investigated under fluorous biphasic conditions, utilising the facile catalyst recovery that is provided by the temperature dependent miscibility of the perfluorinated solvent with normal organic solvents. High conversions and selectivities have been obtained in the batch process and the system is now described under continuous-flow conditions in a custom built reactor. The continuous-flow reactor was successfully run for 46 hours, with conversions to nonanal of 60% and l:b ratios of approximately 10. To understand the mechanism of this reaction more fully, a spectroscopic study of the catalyst formation and hydroformylation reaction was undertaken, using high-pressure infrared (HPIR) and nuclear magnetic resonance (HPNMR) techniques. The results of this study showed that although there is some effect of the strongly electron withdrawing nature of the perfluorinated ligand, the species formed under reaction conditions are very similar to those formed under the analogous triphenylphosphine system. It was found that under reaction conditions the perfluorinated ligand formed both the bis- and tris- phosphine complexes, compared to triphenylphosphine, which only formed the bis-phosphine complexes. The equatorial-equatorial and equatorial-axial isomers of [RhH(CO)₂(P(C₆H₄C₆F₁₃)₃)₂] were identified by means of a deuterium study in the HPIR spectrometer. The low levels of phosphorus and rhodium leaching to the organic phase were attributed to the predominant formation of [RhH(CO)(P(C₆H₄C₆F₁₃)₃)₃] under ambient pressure and temperature (separator conditions) indicated by a well defined quartet in the metal hydride region of the ¹H NMR spectrum.

Synthesis and evaluation of β-fluoro-γ-aminobutyric acid enantiomers

Deniau, Gildas — Mon, 01 Jan 2007 00:00:00 GMT

Abstract: The impact of fluorine in medicinal chemistry is reviewed in the first chapter of this work and the fluorine gauche effect, which has not been fully exploited in medicinal chemistry, is also discussed. GABAA and GABAB receptors are then presented and the synthesis of neurosteroid antagonists acting at GABAA receptors is reported. The synthesis of such compounds was motivated to explore the mode of action of neurosteroids at GABA receptors. The observation that the C-F bond has a strong preference to align gauche to the C-N+ bond in protonated β-fluoroamines stimulated the enantioselective synthesis of 3-fluoro-GABA enantiomers. This was achieved from L- and D- phenylalanine in six steps and in an overall yield of 31%. The preferred conformations of 3-fluoro-GABA in solution are then explored by NMR analysis and ab initio calculations. The biological evaluation of 3-fluoro-GABA enantiomers on GABA aminotransferase was then investigated and showed that the (R)-enantiomer undergoes HF elimination ten times more rapidly than the (S)-enantiomer, suggesting a preferred binding conformation of GABA on GABA aminotransferase. This study demonstrates that the C-F bond can be used as a chemical probe to reveal the binding conformation of a bioactive amine and this offers exciting prospects for future research. The synthesis of 3-fluoro-GABA from phenylalanine indicated that amino acids are practical starting materials for the preparation of β-fluoroamines. This methodology is applied to L-lysine to generate (2R)-fluorohexane-1,6-diamine. The formation of a diamine of potential interest for catalysis is also observed in this synthesis.

Designing hypercyclic replicating networks

Wood, Evan A. — Fri, 30 Nov 2007 00:00:00 GMT

Abstract: In the last 20 years there has been a number of synthetic and natural product based molecular replicators published in the literature. The majority of these systems have focused on the minimal model with only a few examples of cross-catalytic or reciprocal replication. Of the cross-catalytic systems investigated the majority focus around the use of natural products, oligonucleotides, peptides etc. This thesis will investigate the design, synthesis and kinetic analysis of both synthetic minimal and reciprocal replicating systems, and how these two forms of replication interact in a complex hypercyclic network. Chapter 1 introduces key concepts such as molecular recognition, intramolecularity/ enzyme kinetic, bisubstrate systems and the work conducted into replication systems to date. Chapter 2 describes the design, synthesis and kinetic analysis of a reciprocal replicating system, based on Diels-Alder and 1,3-dipolar cycloadditions, before going on to discuss what we have learned and how this system can be improved. Chapter 3 focuses on the design, synthesis and kinetic analysis of a replicating network (minimal and reciprocal replication), based on 1,3-dipolar cycloadditions. Initial individual systems are examined in isolation to determine their behavior and nature. After which the systems are combined to observe how each species interacts in a potential complex hypercyclic network. Chapter 4 investigates the redesign of the replicating network in Chapter 3 in order to overcome the problems identified from its kinetic analysis. Chapter 5 introduces the shift in direction away from kinetically controlled replicating networks towards systems in thermodynamic equilibrium.

Nanomaterials for energy storage

Armstrong, Graham M. — Wed, 20 Jun 2007 00:00:00 GMT

Abstract: Nanotubes (inner diameter of 8nm and outer diameter of 10nm with a length of up to several hundred nm) and nanowires (diameter 20 – 50nm and up to several μm in length) of TiO₂-B have been synthesised and characterised for the first time. These exhibit excellent properties as a host for lithium intercalation and are able to accommodate lithium up to a composition of Li₀.₉₈TiO₂-B for the nanotubes and Li₀.₈₉TiO₂-B for the nanowires. Following some irreversible capacity on the first cycle, which could be reduced to 4% for the nanowires, capacity retention for the nanowires is 99.9% and for the nanotubes is 99.5% per cycle. In both cases, the cycling occurs at ~1.6V versus lithium. The cycling performance was compared with other forms of bulk and nano-TiO₂, all of which were able to intercalate less lithium. Nanowires of VO₂-B (50 – 100nm in diameter and up to several μm in length) were synthesised by a hydrothermal reaction and characterised. By reducing the pressure inside the hydrothermal bomb, narrower VO₂-B nanowires with a diameter of 2 – 5nm and length of up to several hundred nm were created - some of the narrowest nanowires ever made by a hydrothermal reaction. These materials are isostructural with TiO₂-B and were also found to perform well in rechargeable lithium ion batteries, being able to intercalate 0.84Li for the ultra-thin nanowires and 0.57Li for the standard nanowires. The standard VO₂-B nanowires have a capacity retention of 99.8% and the ultra-thin nanowires have 98.4% per cycle after some irreversible capacity on the first cycle. This was found to improve markedly when different electrolytes were used. Macroporous Co₃O₄ (pore size 400nm with a surface area of 208m²/g) was prepared and cycled in rechargeable lithium cells with capacities of 1500mAh/g being achieved. The structure was found to break down on the first cycle and after this the material behaved in the manner of Co₃O₄ nanoparticles. Finally a new candidate for next generation rechargeable lithium batteries was examined; Li/O₂ cells. The cathode is composed of porous carbon in which Li⁺, e⁻ and O₂ meet to form Li₂O₂ on discharge. The reaction is reversible on charge. Capacities of 2800mAh/g can be achieved when 5%mole of αMnO₂ nanowires catalyst is used. Fade is high at 3.4% per cycle meaning that there is much work to do to develop these into a commercial prospect.

Synthesis of ring-constrained thiazolylpyrimidines: inhibitors of cyclin-dependent kinases

McIntyre, Neil A. — Sun, 01 Jan 2006 00:00:00 GMT

Abstract: One current approach in the treatment of cancer is the inhibition of cyclin dependent kinase (CDK) enzymes with small molecules. Here the discovery and development of 2-anilino-4-(thiazol-5-yl)pyrimidine CDK inhibitors is described, including details of the design and successful synthesis of novel ring-constrained thiazolylpyrimidines. The structure-activity relationship (SAR) trends exhibited by this constrained thiazolylpyrimidine family of CDK inhibitors are presented and compared with those from an unconstrained series of analogues. One significant finding from this aspect of the project was that ring-constrained thiazolylpyrimidines in general inhibit CDK2-cyclin E with greater potency than the corresponding unconstrained forms. Furthermore, an X-ray crystal structure of 2-methyl-N-[3-nitrophenyl]-4,5-dihydrothiazolo[4,5-h]quinazolin-8-amine, a representative from the constrained thiazolylpyrimidine series, in complex with CDK2-cyclin A is reported; confirming the binding mode within the CDK2 ATP binding pocket. A further assessment of SARs through the synthesis of control compounds and an extended study into the synthesis of N-substituted derivatives is described. The identification of CDK inhibitors that possess a strong selectivity profile across the CDK family is important. For example, the identification of highly CDK4-selective inhibitors should enable researchers to study the biological role of this important enzyme and to enable a block of cell division in the G1 phase. Here synthetic attempts to prepare a potentially CDK4 selective inhibitor compound, namely 5-methyl-N8-[4-(piperazin-1-yl)phenyl]thiazolo[4,5-h]quinazoline-2,8-diamine, are described. This approach was inspired by SAR data published on a structurally related inhibitor, 8-cyclopentyl-5-methyl-2-[4-(piperazin-1-yl)phenylamino]pyrido[2,3-d]pyrimidin-7(8H)-one.

The promoting role of Au in the Pd-catalysed synthesis of vinyl acetate monomer

Owens, Thomas Graham — Fri, 20 Jul 2007 00:00:00 GMT

4,5-dihydropyrazoles : novel chemistry and biological activity

Catti, Federica — Mon, 01 Jan 2007 00:00:00 GMT

Modification of bis(ditertiarybutylphosphinomethyl)benzene for improved catalyst separation and stability

Parnham, Benjamin L — Wed, 20 Jun 2007 00:00:00 GMT

Abstract: Palladium complexes of bis(di-tert-butylphosphinomethyl)benzene (DTBPMB) show remarkably high activity as alkene methoxycarbonylation catalysts, in addition to numerous other catalytic conversions, and are currently being commercialised by Lucite in ethene methoxycarbonylation to methyl propanoate. Any large-scale exploitation of this catalyst system for heavier products, however, is likely to be hindered by catalyst-product separation problems common to homogeneous catalysts; hence modification of this catalyst system to allow facile product separation was investigated. Tethering of DTBPMB residues onto polystyrene via Suzuki-type coupling of suitable precursors onto bromopolystyrene and boronic acid functionalised polystyrene resins was investigated and the phosphine was successfully immobilised. Phosphination of the resins was not complete however and as such there is concern that other phosphine residues may be present which do not exhibit a bidentate binding motif. The synthesis of a potassium sulfonate derivative of DTBPMB (KBPMBS) was successful and immobilisation of this onto ion exchange resins was also investigated. Some preliminary results from studies into 1-octene methoxycarbonylation using palladium complexes of these resins were obtained. Supporting of this diphosphine onto silica via a sol-gel co-condensation methodology was also investigated; the synthesis of a suitably functionalised precursor containing a sulfonamide linkage was successful via protection of the diphosphine using borane. Although formation of the silica support was successful, attempts to deprotect the phosphine-borane resulted in cleavage of the ligand from the support. An alternative route to this supported ligand was attempted and others discussed. Synthesis of a suitable sol-gel precursor via alkene hydrosilation was also attempted and is discussed. Supporting of the sulfonated phosphine, KBPMBS onto silica functionalised with imidazolium tethered residues was also investigated, although complete leaching of the phosphine from the support by methanol washing was observed. Immobilisation of the synthesised KBPMBS ligand in an ionic liquid (IL) phase was investigated. Complex formation and catalytic activity were demonstrated and a positive effect on conversion was observed upon addition of carbon dioxide to the system; possibly due to the increased CO solubility within the IL phase. Efficient product separation from the IL-immobilised catalyst system was demonstrated, both by organic extraction and using supercritical carbon dioxide flow. However, poor catalyst stability under these conditions appears to present a barrier to recycling this system, with loss of conversion observed on catalyst recycling. Other attempts to immobilise the DTBPMB ligand are discussed and reduction of the sulfide derivative of DTBPMB was demonstrated using hexachlorodisilane, which could be used as a general synthetic strategy for protecting highly electron rich phosphines. It is possible that increasing the bulk of the DTBPMB ligand may increase catalyst stability and result in catalyst systems with higher turnover numbers. Therefore syntheses of bulky ligands based on the DTBPMB backbone were investigated. 1,2,4,5-tetrakis(di(tert-butyl)phosphinomethyl)benzene was successfully synthesised although palladium complexes of this showed no activity in catalytic methoxycarbonylation. Attempts to synthesise a related biphenyl-based tetraphosphine is also discussed, although isolation of this in a pure form was not achieved. Routes toward tetraphenyl and dimethyl-diphenyl functionalised derivatives of DTBPMB have also been explored, although only a monophosphine was isolated due to difficulties in obtaining an intermediate di(chloromethyl) precursor in both synthetic pathways, although this now appears to have been overcome.

Solid oxide steam electrolysis for high temperature hydrogen production

Eccleston, Kelcey L. — Wed, 20 Jun 2007 00:00:00 GMT

Abstract: This study has focused on solid oxide electrolyser cells for high temperature steam electrolysis. Solid oxide electrolysis is the reverse operation of solid oxide fuel cells (SOFC), so many of the same component materials may be used. However, other electrode materials are of interest to improve performance and efficiency. In this work anode materials were investigated for use in solid oxide electrolysers. Perovskite materials of the form L₁₋ｘSrｘMO₃ , where M is Mn, Co, or Fe. LSM is a well understood electrode material for the SOFC. Under electrolysis operation LSM performed well and no interface reactions were observed between the anode and YSZ electrolyte. LSM has a relatively low conductivity and the electrode reaction is limited to the triple phase boundary regions. Mixed ionic-electronic conductors of LSCo and LSF were investigated, with these materials the anode reaction is not limited to triple phase boundaries. The LSCo anode had adherence problems in the electrolysis cells due to the thermal expansion coefficient mismatch with the YSZ electrolyte. The LSCo reacted with the YSZ at the anode/electrolyte interface forming insulating zirconate phases. Due to these issues the LSCo anode cells performed the poorest of the three. The performance of electrolysis cells with LSF anode exceeded both LSM and LSCo, particularly under steam operation, although an interface reaction between the LSF anode and YSZ electrolyte was observed. In addition to the anode material studies this work included the development of solid oxide electrolyser tubes from tape cast precursor materials. Tape casting is a cheap processing method, which allows for co-firing of all ceramic components. The design development resulted in a solid design, which can be fabricated reliably, and balances strength with performance. The design used LSM anode, YSZ electrolyte, and Ni-YSZ cathode materials but could easily be adapted for the use of other component materials. Proper sintering rates, cathode tape formulation, tube length, tape thickness, and electrolyte thickness were factors explored in this work to improve the electrolyser tubes.

Metal oxide porous single crystals and other nanomaterials : an HRTEM study

Dickinson, Calum — Mon, 01 Jan 2007 00:00:00 GMT

Abstract: Three-dimensional porous single crystals (PSCs) are a recent development in the growing world of mesoporous material. The mesoporosity allows for the material to retain their nanoproperties whilst being bulk in size. The current work concentrates on chromium oxide and cobalt oxide PSCs formed in the templates SBA-15 and KIT-6. HRTEM is the main technique used in this investigation, looking at the morphology and single crystallinity of these materials. A growth mechanism for the PSC material is proposed based on HRTEM observations. XRD studies revealed that the confinement effect, caused by the mesopores, reduces the temperature for both cobalt and chromium oxide crystallisation, as well as a different intermediate route from the metal nitrates. The properties of chromium oxide PSC are also investigated magnetically and catalytically. Some metal oxides in different templates are also presented, despite no PSC forming. HRTEM work on other nanomaterials, based on collaboration, is also presented.

Synthesis of D-myo-inositol 1,4,5-triphosphate analogues

Bello, Davide — Mon, 01 Jan 2007 00:00:00 GMT

Abstract: The cytosolic second messenger D-myo-inositol 1,4,5-trisphosphate (InsP₃), has the ability to mobilise Ca²⁺ from intracellular stores. Ca²⁺ controls a wide range of cellular processes, such as cell division and proliferation, apoptosis, fertilisation, gene transcription and muscle contraction. A number of potent InsP₃ receptor agonists are currently known; however, no selective InsP₃Rs antagonists have been reported to date. Using the X-ray crystal structure of the mouse type 1 InsP₃R, a range of analogues (below) has been designed with the intention of these compounds acting as competitive InsP₃Rs antagonists. The successful syntheses of these compounds are reported herein.

PyrH and PrnB crystal structures

De Laurentis, Walter — Fri, 01 Dec 2006 00:00:00 GMT

Abstract: Determination of the three-dimensional structure of enzymes at atomic resolution is a key prerequisite for elucidation of molecular mechanisms of catalysis and catalysis mechanism prediction. X-ray protein crystallography is the most widely used method today for determining protein structures. In this thesis we describe the expression, purification, crystallization and structure solution of two new enzymes: PyrH and PrnB. PyrH is a member of the new emerging family of FADH dependent tryptophan halogenases. It catalyzes the regioselective halogenation of tryptophan at the C-5 position of the indole ring. Elucidation of its structure (Chapter 2) and comparison with PrnA, aregioselective 7th tryptophan halogenase whose structure has already been solved confirmed the proposed mechanism of action for this class of enzymes. PrnB is the only enzyme known to perform exquisite and peculiar ring rearrangement chemistry: it converts 7-Cl-tryptophan and tryptophan into respectively monodechloroaminopyrrolnitrin and aminophenylpyrrole. We developed a method for expression and purification of milligrams of pure and homogeneous recombinant PrnB (Chapter 3). We identified suitable crystallization conditions and determined PrnB structure (Chapter 4). Analysis of the PrnB structure helped us to propose a reaction mechanism for this unique enzyme.